Wall clock time and date at job start Tue Mar 31 2020 23:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.41051 * 2 1 4 4 C 1.55126 * 110.34189 * 122.43460 * 2 1 3 5 5 C 1.55159 * 101.48410 * 156.06265 * 4 2 1 6 6 H 1.09000 * 110.71813 * 82.69640 * 5 4 2 7 7 N 1.46496 * 110.72160 * 205.96965 * 5 4 2 8 8 C 1.34782 * 120.00087 * 199.97590 * 7 5 4 9 9 O 1.21281 * 120.00119 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99987 * 180.02562 * 8 7 5 11 11 S 1.80997 * 109.46898 * 180.02562 * 10 8 7 12 12 C 1.76204 * 99.99886 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99948 * 359.97438 * 12 11 10 14 14 C 1.38796 * 119.99916 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99940 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00313 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.46944 * 89.99862 * 16 14 12 18 18 H 1.48495 * 109.47253 * 210.00009 * 16 14 12 19 19 H 1.48504 * 109.46857 * 330.00145 * 16 14 12 20 20 C 1.54319 * 102.94264 * 324.33447 * 5 4 2 21 21 N 1.47022 * 107.27413 * 22.19447 * 20 5 4 22 22 C 1.34771 * 125.65237 * 181.02216 * 21 20 5 23 23 O 1.21557 * 119.99811 * 180.02562 * 22 21 20 24 24 C 1.47865 * 120.00057 * 0.02562 * 22 21 20 25 25 N 1.34554 * 126.05048 * 179.97438 * 24 22 21 26 26 C 1.30869 * 107.26941 * 179.73474 * 25 24 22 27 27 N 1.34580 * 107.62680 * 0.02562 * 26 25 24 28 28 H 0.97004 * 125.75032 * 179.97438 * 27 26 25 29 29 N 1.28856 * 108.50560 * 359.97438 * 27 26 25 30 30 H 1.09003 * 109.47020 * 180.84585 * 1 2 3 31 31 H 1.08998 * 109.47665 * 300.84636 * 1 2 3 32 32 H 1.09002 * 109.47097 * 60.84868 * 1 2 3 33 33 H 1.08998 * 111.19546 * 37.96039 * 4 2 1 34 34 H 1.08997 * 110.91053 * 274.04146 * 4 2 1 35 35 H 0.96997 * 119.99826 * 19.97921 * 7 5 4 36 36 H 1.09003 * 109.46894 * 299.99565 * 10 8 7 37 37 H 1.08997 * 109.47489 * 59.99689 * 10 8 7 38 38 H 0.96995 * 120.00204 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.88557 * 262.77268 * 20 5 4 40 40 H 1.09008 * 110.00949 * 141.67975 * 20 5 4 41 41 H 1.08002 * 126.18685 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0692 -0.7801 1.2276 5 6 3.4797 -1.1970 0.7335 6 1 4.1929 -0.3846 0.8729 7 7 3.9321 -2.4095 1.4201 8 6 5.2443 -2.7153 1.4533 9 8 6.0507 -1.9866 0.9151 10 6 5.7096 -3.9629 2.1592 11 16 7.5102 -4.0934 2.0295 12 6 7.7727 -5.5944 2.9143 13 1 6.9328 -6.1262 3.3367 14 6 9.0586 -6.0934 3.0684 15 7 9.2546 -7.2150 3.7289 16 14 10.5111 -5.1741 2.3372 17 1 11.0351 -4.2046 3.3325 18 1 11.5792 -6.1413 1.9784 19 1 10.0735 -4.4456 1.1194 20 6 3.2525 -1.4724 -0.7679 21 7 2.0432 -0.7384 -1.1682 22 6 1.4974 -0.7364 -2.4005 23 8 0.4916 -0.0895 -2.6186 24 6 2.1219 -1.5211 -3.4870 25 7 1.6821 -1.6065 -4.7558 26 6 2.5085 -2.3891 -5.4016 27 7 3.4564 -2.7865 -4.5329 28 1 4.2009 -3.3742 -4.7361 29 7 3.2086 -2.2547 -3.3857 30 1 -0.3633 -1.0276 0.0152 31 1 -0.3634 0.5269 0.8822 32 1 -0.3633 0.5006 -0.8975 33 1 1.4550 -1.6553 1.4393 34 1 2.1372 -0.1319 2.1013 35 1 3.2872 -2.9921 1.8509 36 1 5.4241 -3.9136 3.2100 37 1 5.2475 -4.8354 1.6976 38 1 10.1533 -7.5635 3.8370 39 1 3.1091 -2.5405 -0.9314 40 1 4.1077 -1.1207 -1.3452 41 1 2.4415 -2.6666 -6.4433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281174176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:47 Heat of formation + Delta-G solvation = 30.631751 kcal Electronic energy + Delta-G solvation = -26552.330041 eV Core-core repulsion = 22595.961076 eV Total energy + Delta-G solvation = -3956.368966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.80768 -40.62165 -39.26915 -37.56817 -34.33830 -33.74929 -32.85977 -32.48541 -31.15130 -30.83446 -28.60790 -26.22661 -25.66859 -25.12757 -23.37141 -22.54398 -21.44032 -20.58954 -19.70345 -18.74571 -17.95490 -17.41491 -17.13401 -16.63521 -16.34331 -16.14882 -15.25189 -15.10792 -15.03690 -14.93024 -14.31086 -14.05560 -13.81430 -13.69100 -13.41439 -12.92171 -12.84444 -12.60114 -12.52881 -12.38867 -12.16278 -11.70885 -11.49960 -11.31263 -11.17156 -11.05727 -11.05109 -10.82561 -10.65090 -10.16157 -10.08659 -9.90880 -9.62675 -9.17522 -9.04525 -8.94391 -8.55801 -6.97204 -6.33498 -4.05666 1.02697 1.76547 2.16015 2.46995 2.71055 2.85434 3.07095 3.22283 3.29324 3.45413 3.55589 3.77278 4.10422 4.14793 4.26144 4.28342 4.49293 4.61607 4.68695 4.86640 4.95761 5.04062 5.05577 5.24815 5.32267 5.42903 5.46708 5.55815 5.67664 5.71170 5.74788 5.82878 5.85314 5.93385 5.95719 6.23910 6.34713 6.41703 7.07168 7.48775 7.54447 7.88558 7.89548 8.37036 8.38177 9.12556 10.75772 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014612 B = 0.002662 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.813476 B =10516.568508 C =11928.543343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.140 3.860 3 H 0.086 0.914 4 C -0.136 4.136 5 C 0.138 3.862 6 H 0.106 0.894 7 N -0.727 5.727 8 C 0.533 3.467 9 O -0.515 6.515 10 C -0.125 4.125 11 S -0.141 6.141 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.236 1.236 20 C 0.095 3.905 21 N -0.601 5.601 22 C 0.632 3.368 23 O -0.509 6.509 24 C 0.148 3.852 25 N -0.464 5.464 26 C 0.196 3.804 27 N -0.396 5.396 28 H 0.454 0.546 29 N -0.264 5.264 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.402 0.598 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.271 0.729 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 10.567 -12.957 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 H 0.104 0.896 4 C -0.175 4.175 5 C 0.031 3.969 6 H 0.124 0.876 7 N -0.381 5.381 8 C 0.319 3.681 9 O -0.389 6.389 10 C -0.275 4.275 11 S 0.085 5.915 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.160 1.160 20 C -0.029 4.029 21 N -0.336 5.336 22 C 0.417 3.583 23 O -0.381 6.381 24 C -0.132 4.132 25 N -0.188 5.188 26 C -0.102 4.102 27 N -0.120 5.120 28 H 0.301 0.699 29 N -0.106 5.106 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.237 0.763 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -15.720 12.210 -13.475 24.037 hybrid contribution 0.203 -1.711 0.162 1.731 sum -15.517 10.499 -13.313 22.984 Atomic orbital electron populations 1.22202 0.93214 1.03011 1.04020 1.21996 0.95737 0.95618 0.82891 0.89649 1.23248 0.95095 1.01418 0.97710 1.21854 0.96000 0.88835 0.90202 0.87560 1.45921 1.08177 1.26062 1.57969 1.20339 0.81577 0.86741 0.79446 1.90710 1.53050 1.50742 1.44362 1.23282 1.03360 0.97513 1.03356 1.84788 0.98769 1.33996 1.73908 1.22314 0.97602 1.07496 1.39530 0.89375 1.24717 0.98399 0.94317 0.93886 1.69936 1.22774 1.19502 1.39459 0.86735 0.82608 0.80499 0.82002 1.19177 1.19952 1.15952 1.22613 0.86927 0.97667 0.95728 1.48189 1.28306 1.48587 1.08537 1.15805 0.82831 0.80276 0.79430 1.90775 1.23822 1.42482 1.81042 1.23740 0.93489 1.02137 0.93841 1.71295 1.26687 1.17541 1.03298 1.26752 0.87251 0.96452 0.99747 1.45242 1.24105 1.36278 1.06338 0.69883 1.74503 1.17491 1.11822 1.06785 0.92439 0.91576 0.89248 0.89554 0.88631 0.76287 0.88378 0.88422 0.91908 0.90136 0.89901 0.75271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 8.71 37.16 0.32 -1.12 16 2 C 0.14 1.22 3.77 -66.30 -0.25 0.97 16 3 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.14 -0.97 6.12 -24.46 -0.15 -1.12 16 5 C 0.14 1.38 3.23 -66.10 -0.21 1.16 16 6 H 0.11 1.20 7.70 -51.93 -0.40 0.80 16 7 N -0.73 -8.04 5.13 -52.03 -0.27 -8.31 16 8 C 0.53 8.57 7.84 -10.98 -0.09 8.48 16 9 O -0.51 -10.19 15.59 5.56 0.09 -10.11 16 10 C -0.12 -2.24 6.16 36.01 0.22 -2.02 16 11 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 12 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 13 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 14 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 15 N -0.88 -26.10 13.97 55.49 0.78 -25.33 16 16 Si 0.86 21.26 27.74 -169.99 -4.72 16.55 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 20 C 0.09 1.05 5.28 -3.07 -0.02 1.03 16 21 N -0.60 -6.63 3.24 -164.01 -0.53 -7.16 16 22 C 0.63 8.47 7.64 -12.32 -0.09 8.37 16 23 O -0.51 -7.90 14.74 5.32 0.08 -7.82 16 24 C 0.15 1.88 7.82 -156.35 -1.22 0.66 16 25 N -0.46 -5.49 11.41 -12.37 -0.14 -5.63 16 26 C 0.20 1.31 13.14 -90.49 -1.19 0.12 16 27 N -0.40 -2.71 6.93 29.56 0.20 -2.50 16 28 H 0.45 1.38 8.96 -190.20 -1.71 -0.33 16 29 N -0.26 -2.88 9.78 32.07 0.31 -2.57 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 33 H 0.09 0.55 7.93 -51.93 -0.41 0.14 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.40 3.35 8.52 -40.82 -0.35 3.01 16 36 H 0.10 1.64 8.14 -51.91 -0.42 1.21 16 37 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.08 0.94 7.54 -51.93 -0.39 0.55 16 40 H 0.08 1.04 7.74 -51.92 -0.40 0.64 16 41 H 0.23 0.28 8.06 -52.49 -0.42 -0.14 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -38.49 360.82 -9.71 -48.20 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.50 Total: -0.20 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.46 Total: 4.86 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.35 Total: -51.50 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.16 Total: -17.93 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.72 Total: 16.55 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.49 -9.71 -48.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281174176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.831 kcal (2) G-P(sol) polarization free energy of solvation -38.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds