Wall clock time and date at job start Tue Mar 31 2020 23:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.41051 * 2 1 4 4 C 1.55126 * 110.34189 * 122.43460 * 2 1 3 5 5 C 1.55159 * 101.48410 * 156.06265 * 4 2 1 6 6 H 1.09000 * 110.71813 * 82.69640 * 5 4 2 7 7 N 1.46496 * 110.72160 * 205.96965 * 5 4 2 8 8 C 1.34782 * 120.00087 * 199.97590 * 7 5 4 9 9 O 1.21281 * 120.00119 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99987 * 180.02562 * 8 7 5 11 11 S 1.80997 * 109.46898 * 180.02562 * 10 8 7 12 12 C 1.76204 * 99.99886 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99948 * 359.97438 * 12 11 10 14 14 C 1.38796 * 119.99916 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99940 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00313 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.46944 * 89.99862 * 16 14 12 18 18 H 1.48495 * 109.47253 * 210.00009 * 16 14 12 19 19 H 1.48504 * 109.46857 * 330.00145 * 16 14 12 20 20 C 1.54319 * 102.94264 * 324.33447 * 5 4 2 21 21 N 1.47022 * 107.27413 * 22.19447 * 20 5 4 22 22 C 1.34771 * 125.65237 * 181.02216 * 21 20 5 23 23 O 1.21557 * 119.99811 * 180.02562 * 22 21 20 24 24 C 1.47865 * 120.00057 * 0.02562 * 22 21 20 25 25 N 1.34554 * 126.05048 * 179.97438 * 24 22 21 26 26 C 1.30869 * 107.26941 * 179.73474 * 25 24 22 27 27 N 1.34580 * 107.62680 * 0.02562 * 26 25 24 28 28 H 0.97004 * 125.75032 * 179.97438 * 27 26 25 29 29 N 1.28856 * 108.50560 * 359.97438 * 27 26 25 30 30 H 1.09003 * 109.47020 * 180.84585 * 1 2 3 31 31 H 1.08998 * 109.47665 * 300.84636 * 1 2 3 32 32 H 1.09002 * 109.47097 * 60.84868 * 1 2 3 33 33 H 1.08998 * 111.19546 * 37.96039 * 4 2 1 34 34 H 1.08997 * 110.91053 * 274.04146 * 4 2 1 35 35 H 0.96997 * 119.99826 * 19.97921 * 7 5 4 36 36 H 1.09003 * 109.46894 * 299.99565 * 10 8 7 37 37 H 1.08997 * 109.47489 * 59.99689 * 10 8 7 38 38 H 0.96995 * 120.00204 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.88557 * 262.77268 * 20 5 4 40 40 H 1.09008 * 110.00949 * 141.67975 * 20 5 4 41 41 H 1.08002 * 126.18685 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0692 -0.7801 1.2276 5 6 3.4797 -1.1970 0.7335 6 1 4.1929 -0.3846 0.8729 7 7 3.9321 -2.4095 1.4201 8 6 5.2443 -2.7153 1.4533 9 8 6.0507 -1.9866 0.9151 10 6 5.7096 -3.9629 2.1592 11 16 7.5102 -4.0934 2.0295 12 6 7.7727 -5.5944 2.9143 13 1 6.9328 -6.1262 3.3367 14 6 9.0586 -6.0934 3.0684 15 7 9.2546 -7.2150 3.7289 16 14 10.5111 -5.1741 2.3372 17 1 11.0351 -4.2046 3.3325 18 1 11.5792 -6.1413 1.9784 19 1 10.0735 -4.4456 1.1194 20 6 3.2525 -1.4724 -0.7679 21 7 2.0432 -0.7384 -1.1682 22 6 1.4974 -0.7364 -2.4005 23 8 0.4916 -0.0895 -2.6186 24 6 2.1219 -1.5211 -3.4870 25 7 1.6821 -1.6065 -4.7558 26 6 2.5085 -2.3891 -5.4016 27 7 3.4564 -2.7865 -4.5329 28 1 4.2009 -3.3742 -4.7361 29 7 3.2086 -2.2547 -3.3857 30 1 -0.3633 -1.0276 0.0152 31 1 -0.3634 0.5269 0.8822 32 1 -0.3633 0.5006 -0.8975 33 1 1.4550 -1.6553 1.4393 34 1 2.1372 -0.1319 2.1013 35 1 3.2872 -2.9921 1.8509 36 1 5.4241 -3.9136 3.2100 37 1 5.2475 -4.8354 1.6976 38 1 10.1533 -7.5635 3.8370 39 1 3.1091 -2.5405 -0.9314 40 1 4.1077 -1.1207 -1.3452 41 1 2.4415 -2.6666 -6.4433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281174176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:46 Heat of formation + Delta-G solvation = 1.532868 kcal Electronic energy + Delta-G solvation = -26553.591864 eV Core-core repulsion = 22595.961076 eV Total energy + Delta-G solvation = -3957.630788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.50660 -41.54289 -40.45504 -38.56977 -35.42719 -34.65738 -34.48354 -33.63206 -32.00380 -31.84922 -29.79927 -27.83632 -27.01307 -25.95414 -24.02271 -23.45746 -22.21260 -21.73545 -20.49742 -19.86857 -19.45942 -18.29889 -18.05721 -17.71191 -17.29558 -17.26000 -17.03305 -16.37098 -16.09087 -15.80396 -15.63386 -15.17197 -14.92284 -14.77211 -14.68390 -14.51451 -13.89170 -13.57626 -13.33031 -13.24659 -13.22156 -13.11556 -12.99876 -12.69297 -12.50492 -12.22856 -11.92001 -11.84619 -11.80823 -11.59024 -11.16025 -11.07524 -10.99497 -10.81556 -10.51086 -10.22724 -9.84472 -8.97088 -8.50383 -6.20528 0.21877 0.99914 1.10182 1.32625 1.38389 1.48352 1.56689 1.59366 1.89965 2.16134 2.23335 2.26961 2.72400 2.88155 2.98223 3.36639 3.47291 3.51338 3.85363 3.96614 3.98884 4.11150 4.19514 4.27914 4.34089 4.51332 4.61212 4.71687 4.73694 4.86643 4.89005 4.94367 5.13475 5.16720 5.23096 5.41891 5.50399 5.71982 5.89133 6.13240 6.16637 6.45953 6.76513 6.95107 7.04916 7.19306 8.62053 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014612 B = 0.002662 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.813476 B =10516.568508 C =11928.543343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 H 0.092 0.908 4 C -0.118 4.118 5 C 0.138 3.862 6 H 0.098 0.902 7 N -0.700 5.700 8 C 0.540 3.460 9 O -0.555 6.555 10 C -0.112 4.112 11 S -0.174 6.174 12 C -0.527 4.527 13 H 0.062 0.938 14 C 0.044 3.956 15 N -0.919 5.919 16 Si 0.914 3.086 17 H -0.263 1.263 18 H -0.261 1.261 19 H -0.235 1.235 20 C 0.104 3.896 21 N -0.596 5.596 22 C 0.624 3.376 23 O -0.542 6.542 24 C 0.121 3.879 25 N -0.511 5.511 26 C 0.220 3.780 27 N -0.384 5.384 28 H 0.470 0.530 29 N -0.280 5.280 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.420 0.580 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.276 0.724 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.081 11.000 -13.381 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 H 0.110 0.890 4 C -0.156 4.156 5 C 0.032 3.968 6 H 0.116 0.884 7 N -0.355 5.355 8 C 0.326 3.674 9 O -0.433 6.433 10 C -0.263 4.263 11 S 0.053 5.947 12 C -0.675 4.675 13 H 0.081 0.919 14 C -0.161 4.161 15 N -0.557 5.557 16 Si 0.736 3.264 17 H -0.188 1.188 18 H -0.186 1.186 19 H -0.158 1.158 20 C -0.020 4.020 21 N -0.330 5.330 22 C 0.409 3.591 23 O -0.417 6.417 24 C -0.158 4.158 25 N -0.237 5.237 26 C -0.077 4.077 27 N -0.110 5.110 28 H 0.321 0.679 29 N -0.123 5.123 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.258 0.742 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -16.284 12.614 -13.877 24.836 hybrid contribution 0.239 -1.874 0.226 1.902 sum -16.045 10.741 -13.651 23.646 Atomic orbital electron populations 1.22107 0.92984 1.02681 1.03894 1.22258 0.95965 0.96132 0.82653 0.88979 1.23238 0.92625 1.02194 0.97552 1.21903 0.97559 0.87759 0.89562 0.88399 1.45624 1.06657 1.26408 1.56772 1.19946 0.82843 0.85660 0.78968 1.90708 1.54503 1.51776 1.46276 1.23275 0.98399 0.99482 1.05142 1.84701 1.04995 1.31711 1.73291 1.22479 0.96977 1.08729 1.39328 0.91946 1.25571 1.01064 0.95105 0.94334 1.70019 1.23758 1.20997 1.40927 0.85869 0.79684 0.79540 0.81295 1.18789 1.18574 1.15844 1.22446 0.86278 0.97187 0.96130 1.48247 1.27973 1.48245 1.08573 1.16093 0.82659 0.80160 0.80203 1.90748 1.25206 1.43988 1.81719 1.23689 0.94466 1.03364 0.94290 1.71251 1.28983 1.19940 1.03527 1.27681 0.85196 0.93767 1.01019 1.45274 1.24548 1.35755 1.05394 0.67870 1.74411 1.17112 1.12057 1.08691 0.92911 0.88962 0.91949 0.88020 0.85994 0.74190 0.86623 0.86838 0.91426 0.90662 0.91778 0.70094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 8.71 71.98 0.63 -1.93 16 2 C 0.13 2.09 3.77 45.54 0.17 2.26 16 3 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.12 -1.30 6.12 32.06 0.20 -1.10 16 5 C 0.14 2.47 3.23 46.18 0.15 2.62 16 6 H 0.10 2.03 7.70 -2.39 -0.02 2.01 16 7 N -0.70 -13.63 5.13 -436.92 -2.24 -15.87 16 8 C 0.54 16.35 7.84 87.66 0.69 17.04 16 9 O -0.56 -21.43 15.59 -3.03 -0.05 -21.48 16 10 C -0.11 -3.84 6.16 71.24 0.44 -3.40 16 11 S -0.17 -8.32 18.55 -56.49 -1.05 -9.37 16 12 C -0.53 -29.70 10.04 67.95 0.68 -29.02 16 13 H 0.06 3.71 8.03 -2.91 -0.02 3.69 16 14 C 0.04 2.55 5.50 84.86 0.47 3.01 16 15 N -0.92 -54.97 13.97 21.65 0.30 -54.67 16 16 Si 0.91 43.77 27.74 68.60 1.90 45.68 16 17 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.23 -11.12 6.74 99.48 0.67 -10.45 16 20 C 0.10 2.21 5.28 86.73 0.46 2.67 16 21 N -0.60 -12.96 3.24 -791.09 -2.56 -15.52 16 22 C 0.62 17.14 7.64 86.79 0.66 17.81 16 23 O -0.54 -17.50 14.74 -3.90 -0.06 -17.56 16 24 C 0.12 3.12 7.82 137.12 1.07 4.19 16 25 N -0.51 -11.94 11.41 -193.03 -2.20 -14.14 16 26 C 0.22 2.50 13.14 180.30 2.37 4.86 16 27 N -0.38 -4.67 6.93 -60.38 -0.42 -5.08 16 28 H 0.47 1.92 8.96 -219.79 -1.97 -0.05 16 29 N -0.28 -5.99 9.78 -52.44 -0.51 -6.50 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 33 H 0.10 0.88 7.93 -2.39 -0.02 0.86 16 34 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.42 5.47 8.52 -92.71 -0.79 4.68 16 36 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 38 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.08 1.69 7.54 -2.39 -0.02 1.67 16 40 H 0.06 1.63 7.74 -2.38 -0.02 1.61 16 41 H 0.28 -0.40 8.06 -2.91 -0.02 -0.43 16 Total: -1.00 -87.03 360.82 -0.60 -87.63 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -1.70 Total: 7.87 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 7.98 Total: 19.02 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -7.64 Total: -111.79 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.10 Total: -39.04 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.90 Total: 45.68 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.05 Total: -9.37 kcal Total: -87.03 -0.60 -87.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281174176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.167 kcal (2) G-P(sol) polarization free energy of solvation -87.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds