Wall clock time and date at job start Tue Mar 31 2020 23:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.87279 * 2 1 4 4 C 1.54321 * 109.88173 * 121.01084 * 2 1 3 5 5 C 1.55157 * 103.10033 * 97.28990 * 4 2 1 6 6 H 1.09001 * 111.00741 * 277.51995 * 5 4 2 7 7 N 1.46506 * 111.00374 * 153.66359 * 5 4 2 8 8 C 1.34774 * 119.99806 * 155.00501 * 7 5 4 9 9 O 1.21282 * 120.00225 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99807 * 180.02562 * 8 7 5 11 11 S 1.80995 * 109.47122 * 179.97438 * 10 8 7 12 12 C 1.76194 * 100.00271 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99904 * 0.02562 * 12 11 10 14 14 C 1.38797 * 120.00218 * 180.02562 * 12 11 10 15 15 N 1.31630 * 120.00243 * 359.97438 * 14 12 11 16 16 Si 1.86811 * 119.99957 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47107 * 60.00010 * 16 14 12 18 18 H 1.48497 * 109.46854 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47044 * 300.00070 * 16 14 12 20 20 C 1.55392 * 101.36576 * 35.49711 * 5 4 2 21 21 N 1.47019 * 110.01048 * 238.90068 * 2 1 3 22 22 C 1.34778 * 125.65277 * 59.48320 * 21 2 1 23 23 O 1.21560 * 119.99252 * 0.02562 * 22 21 2 24 24 C 1.47861 * 120.00236 * 179.97438 * 22 21 2 25 25 N 1.34551 * 126.04737 * 359.69754 * 24 22 21 26 26 C 1.30871 * 107.26867 * 179.88846 * 25 24 22 27 27 N 1.34584 * 107.62598 * 0.36843 * 26 25 24 28 28 H 0.97005 * 125.75056 * 179.80517 * 27 26 25 29 29 N 1.28852 * 108.50061 * 359.76067 * 27 26 25 30 30 H 1.09003 * 109.46934 * 298.98645 * 1 2 3 31 31 H 1.09004 * 109.47312 * 58.98458 * 1 2 3 32 32 H 1.09000 * 109.46935 * 178.98527 * 1 2 3 33 33 H 1.09002 * 110.72109 * 215.74371 * 4 2 1 34 34 H 1.09003 * 110.72356 * 338.84196 * 4 2 1 35 35 H 0.96996 * 119.99506 * 335.00056 * 7 5 4 36 36 H 1.08994 * 109.47044 * 299.99727 * 10 8 7 37 37 H 1.08998 * 109.47068 * 59.99941 * 10 8 7 38 38 H 0.97001 * 119.99778 * 179.97438 * 15 14 12 39 39 H 1.08999 * 110.34334 * 204.17153 * 20 5 4 40 40 H 1.08999 * 110.35427 * 81.86509 * 20 5 4 41 41 H 1.08000 * 126.19128 * 180.12409 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 6 2.3548 -2.1692 0.6991 6 1 1.4488 -2.7744 0.6665 7 7 3.3951 -2.8272 1.4935 8 6 3.4585 -4.1727 1.5386 9 8 2.6541 -4.8388 0.9220 10 6 4.5283 -4.8496 2.3561 11 16 4.3495 -6.6452 2.2156 12 6 5.6858 -7.1669 3.2385 13 1 6.3141 -6.4334 3.7219 14 6 5.9312 -8.5205 3.4232 15 7 5.1652 -9.4145 2.8345 16 14 7.3485 -9.0735 4.5072 17 1 7.1507 -8.5537 5.8841 18 1 7.3961 -10.5573 4.5409 19 1 8.6250 -8.5491 3.9587 20 6 2.8619 -1.8473 -0.7341 21 7 2.0331 -0.7135 -1.1829 22 6 1.7794 -0.3853 -2.4652 23 8 1.0799 0.5758 -2.7194 24 6 2.3529 -1.1934 -3.5627 25 7 3.1447 -2.2720 -3.4214 26 6 3.4355 -2.7005 -4.6233 27 7 2.8309 -1.8829 -5.5049 28 1 2.8744 -1.9594 -6.4709 29 7 2.1838 -0.9818 -4.8495 30 1 -0.3633 0.4980 0.8990 31 1 -0.3634 0.5295 -0.8808 32 1 -0.3633 -1.0275 -0.0182 33 1 2.9642 -0.2791 1.6203 34 1 1.2919 -0.7858 2.0214 35 1 4.0383 -2.2945 1.9868 36 1 5.5100 -4.5520 1.9877 37 1 4.4278 -4.5555 3.4009 38 1 5.3369 -10.3605 2.9633 39 1 2.7165 -2.7061 -1.3893 40 1 3.9135 -1.5618 -0.7089 41 1 4.0526 -3.5535 -4.8643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281174178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:49 Heat of formation + Delta-G solvation = 0.469346 kcal Electronic energy + Delta-G solvation = -26455.463075 eV Core-core repulsion = 22497.786170 eV Total energy + Delta-G solvation = -3957.676906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.51325 -41.47438 -40.37208 -38.60001 -35.38801 -34.76433 -34.53608 -32.93905 -32.24498 -31.81269 -29.65502 -27.60884 -26.94134 -26.17604 -23.93204 -23.57296 -21.94298 -21.66762 -20.59172 -19.80870 -19.60600 -18.18520 -17.96556 -17.52209 -17.31410 -16.89254 -16.82843 -16.33236 -16.24968 -15.79679 -15.63322 -15.16939 -14.72772 -14.62139 -14.49708 -14.33162 -14.00183 -13.55806 -13.33868 -13.25812 -13.12005 -13.03326 -12.83151 -12.60965 -12.41174 -12.22953 -11.83538 -11.73469 -11.63667 -11.44949 -11.41447 -11.08643 -10.89799 -10.84666 -10.20966 -10.14409 -9.78522 -8.60313 -8.30207 -6.07089 0.21811 1.08954 1.27757 1.37434 1.46812 1.51293 1.60666 1.66552 2.00963 2.16349 2.30319 2.35568 2.95507 3.03959 3.34774 3.43295 3.52396 3.58455 3.95414 3.99263 4.03119 4.13858 4.25054 4.36913 4.39953 4.59924 4.62159 4.74435 4.80279 4.90870 4.94523 4.99268 5.07304 5.17918 5.30661 5.40037 5.46490 5.50767 5.90465 6.19206 6.24184 6.56561 6.74765 7.03689 7.11465 7.31090 8.78521 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.002470 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.492725 B =11333.131496 C =12693.077610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.094 0.906 4 C -0.118 4.118 5 C 0.135 3.865 6 H 0.083 0.917 7 N -0.697 5.697 8 C 0.538 3.462 9 O -0.561 6.561 10 C -0.129 4.129 11 S -0.150 6.150 12 C -0.545 4.545 13 H 0.083 0.917 14 C 0.014 3.986 15 N -0.912 5.912 16 Si 0.996 3.004 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.262 1.262 20 C 0.097 3.903 21 N -0.591 5.591 22 C 0.624 3.376 23 O -0.552 6.552 24 C 0.122 3.878 25 N -0.509 5.509 26 C 0.218 3.782 27 N -0.380 5.380 28 H 0.472 0.528 29 N -0.275 5.275 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.421 0.579 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.270 0.730 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 20.172 -10.321 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.112 0.888 4 C -0.156 4.156 5 C 0.028 3.972 6 H 0.101 0.899 7 N -0.352 5.352 8 C 0.324 3.676 9 O -0.438 6.438 10 C -0.280 4.280 11 S 0.077 5.923 12 C -0.693 4.693 13 H 0.102 0.898 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.818 3.182 17 H -0.187 1.187 18 H -0.206 1.206 19 H -0.186 1.186 20 C -0.027 4.027 21 N -0.324 5.324 22 C 0.409 3.591 23 O -0.428 6.428 24 C -0.157 4.157 25 N -0.236 5.236 26 C -0.079 4.079 27 N -0.106 5.106 28 H 0.323 0.677 29 N -0.117 5.117 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.259 0.741 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -3.292 19.865 -11.360 23.119 hybrid contribution 1.878 -0.108 0.347 1.913 sum -1.414 19.757 -11.013 22.663 Atomic orbital electron populations 1.22167 0.94316 1.02154 1.03436 1.21825 0.95150 0.96943 0.82879 0.88830 1.23049 1.04598 0.91687 0.96310 1.22045 0.91155 0.94329 0.89680 0.89875 1.45492 1.34008 1.04954 1.50720 1.20076 0.84371 0.82800 0.80308 1.90713 1.42396 1.65200 1.45502 1.23368 1.01280 0.99710 1.03673 1.85589 1.43523 0.97591 1.65619 1.23183 1.16750 0.95306 1.34053 0.89840 1.26092 0.99958 0.95636 0.97428 1.70177 1.39604 1.01920 1.43123 0.85043 0.77748 0.77008 0.78442 1.18733 1.20637 1.18630 1.22975 0.94928 0.88994 0.95803 1.48120 1.49605 1.30606 1.04041 1.16071 0.79767 0.82546 0.80678 1.90781 1.39489 1.29133 1.83427 1.23568 1.03237 0.97706 0.91205 1.71445 1.15933 1.10695 1.25553 1.27620 0.98181 0.98844 0.83278 1.45258 1.33672 1.18826 1.12813 0.67664 1.74234 1.16831 1.14440 1.06174 0.88584 0.93244 0.93183 0.86824 0.87051 0.74061 0.86977 0.86988 0.92091 0.89689 0.89859 0.70671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.06 71.98 0.65 -2.31 16 2 C 0.13 2.33 3.49 45.34 0.16 2.49 16 3 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 4 C -0.12 -1.49 6.13 31.78 0.19 -1.29 16 5 C 0.13 2.80 3.45 46.55 0.16 2.96 16 6 H 0.08 2.21 7.54 -2.39 -0.02 2.20 16 7 N -0.70 -15.06 5.21 -435.16 -2.27 -17.33 16 8 C 0.54 18.15 7.85 87.66 0.69 18.84 16 9 O -0.56 -24.54 15.50 -3.03 -0.05 -24.59 16 10 C -0.13 -4.72 6.16 71.24 0.44 -4.29 16 11 S -0.15 -8.04 20.57 -56.49 -1.16 -9.21 16 12 C -0.55 -30.19 9.50 67.95 0.65 -29.54 16 13 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 14 C 0.01 0.76 5.49 84.86 0.47 1.22 16 15 N -0.91 -55.05 13.22 21.65 0.29 -54.77 16 16 Si 1.00 42.54 29.55 68.60 2.03 44.57 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 20 C 0.10 2.21 5.85 87.02 0.51 2.72 16 21 N -0.59 -13.80 3.08 -790.42 -2.44 -16.24 16 22 C 0.62 17.95 7.64 86.79 0.66 18.61 16 23 O -0.55 -18.51 16.00 -3.90 -0.06 -18.57 16 24 C 0.12 3.25 7.79 137.13 1.07 4.32 16 25 N -0.51 -11.63 8.47 -193.04 -1.64 -13.27 16 26 C 0.22 2.78 13.14 180.30 2.37 5.15 16 27 N -0.38 -4.67 6.93 -60.38 -0.42 -5.09 16 28 H 0.47 1.21 8.96 -219.79 -1.97 -0.76 16 29 N -0.28 -6.44 12.30 -52.44 -0.65 -7.09 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.15 6.77 -2.39 -0.02 1.13 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 0.85 8.00 -2.39 -0.02 0.83 16 34 H 0.11 1.10 7.83 -2.39 -0.02 1.08 16 35 H 0.42 5.80 8.57 -92.71 -0.79 5.01 16 36 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 37 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.08 2.42 6.16 -2.39 -0.01 2.41 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.28 0.53 8.06 -2.91 -0.02 0.51 16 Total: -1.00 -89.92 364.57 -0.01 -89.93 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -1.66 Total: 12.76 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 8.01 Total: 18.88 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -7.12 Total: -113.77 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.11 Total: -43.16 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.21 kcal Total: -89.92 -0.01 -89.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281174178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.398 kcal (2) G-P(sol) polarization free energy of solvation -89.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds