Wall clock time and date at job start Tue Mar 31 2020 23:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.87357 * 2 1 4 4 C 1.54326 * 109.88576 * 238.98081 * 2 1 3 5 5 C 1.55154 * 102.93996 * 218.23169 * 4 2 1 6 6 H 1.09004 * 111.00069 * 153.61528 * 5 4 2 7 7 N 1.46499 * 111.00732 * 277.42444 * 5 4 2 8 8 C 1.34778 * 120.00278 * 201.82008 * 7 5 4 9 9 O 1.21278 * 119.99748 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00209 * 180.02562 * 8 7 5 11 11 S 1.80999 * 109.47181 * 180.02562 * 10 8 7 12 12 C 1.76199 * 99.99825 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00405 * 0.02562 * 12 11 10 14 14 C 1.38803 * 119.99855 * 179.72221 * 12 11 10 15 15 N 1.31634 * 119.99756 * 0.27728 * 14 12 11 16 16 Si 1.86803 * 120.00005 * 180.27923 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00123 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00074 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99873 * 16 14 12 20 20 C 1.54916 * 101.61922 * 35.52313 * 5 4 2 21 21 N 1.47020 * 110.01426 * 121.08959 * 2 1 3 22 22 C 1.34773 * 125.65293 * 298.40618 * 21 2 1 23 23 O 1.21559 * 119.99722 * 359.97438 * 22 21 2 24 24 C 1.47868 * 120.00611 * 179.97438 * 22 21 2 25 25 N 1.34543 * 126.05166 * 179.97438 * 24 22 21 26 26 C 1.30871 * 107.27043 * 179.97438 * 25 24 22 27 27 N 1.34584 * 107.62619 * 359.97438 * 26 25 24 28 28 H 0.96993 * 125.75006 * 179.97438 * 27 26 25 29 29 N 1.28855 * 108.50156 * 359.73387 * 27 26 25 30 30 H 1.09002 * 109.46446 * 181.02025 * 1 2 3 31 31 H 1.08994 * 109.47345 * 301.01920 * 1 2 3 32 32 H 1.08998 * 109.46672 * 61.02448 * 1 2 3 33 33 H 1.08997 * 110.71867 * 99.86847 * 4 2 1 34 34 H 1.08997 * 110.87236 * 336.66671 * 4 2 1 35 35 H 0.97000 * 119.99972 * 21.82364 * 7 5 4 36 36 H 1.08999 * 109.47278 * 59.99800 * 10 8 7 37 37 H 1.09002 * 109.46837 * 300.00183 * 10 8 7 38 38 H 0.97000 * 119.99219 * 179.97438 * 15 14 12 39 39 H 1.08995 * 110.36461 * 81.80406 * 20 5 4 40 40 H 1.08998 * 110.36511 * 204.13213 * 20 5 4 41 41 H 1.07998 * 126.19030 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0550 -0.7479 -1.2437 5 6 3.2901 -1.5100 -0.6952 6 1 3.4893 -2.4058 -1.2835 7 7 4.4681 -0.6400 -0.6534 8 6 5.7035 -1.1785 -0.6390 9 8 5.8400 -2.3834 -0.6611 10 6 6.9151 -0.2836 -0.5954 11 16 8.4143 -1.2978 -0.5861 12 6 9.6394 -0.0324 -0.5352 13 1 9.3429 1.0060 -0.5193 14 6 10.9854 -0.3703 -0.5092 15 7 11.3467 -1.6359 -0.5281 16 14 12.2841 0.9711 -0.4473 17 1 12.5934 1.2957 0.9683 18 1 13.5166 0.4985 -1.1276 19 1 11.7745 2.1854 -1.1337 20 6 2.8203 -1.8777 0.7344 21 7 2.0332 -0.7133 1.1830 22 6 1.8126 -0.3617 2.4652 23 8 1.1464 0.6229 2.7193 24 6 2.3807 -1.1733 3.5629 25 7 2.2384 -0.9351 4.8794 26 6 2.8870 -1.8761 5.5169 27 7 3.4283 -2.6941 4.5953 28 1 3.9653 -3.4802 4.7809 29 7 3.1087 -2.2598 3.4250 30 1 -0.3632 -1.0276 0.0183 31 1 -0.3634 0.5295 0.8806 32 1 -0.3632 0.4978 -0.8990 33 1 2.3504 -0.0433 -2.0211 34 1 1.3077 -1.4457 -1.6214 35 1 4.3589 0.3237 -0.6361 36 1 6.8836 0.3271 0.3069 37 1 6.9203 0.3639 -1.4723 38 1 12.2874 -1.8719 -0.5103 39 1 2.1964 -2.7711 0.7106 40 1 3.6789 -2.0308 1.3882 41 1 2.9725 -1.9780 6.5886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281174180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:53 Heat of formation + Delta-G solvation = 28.447318 kcal Electronic energy + Delta-G solvation = -26869.261298 eV Core-core repulsion = 22912.797608 eV Total energy + Delta-G solvation = -3956.463690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.72434 -40.58481 -39.05930 -37.51714 -34.03091 -33.65448 -32.77522 -32.45551 -31.07161 -30.76854 -28.48394 -26.23098 -25.51862 -25.19963 -23.27818 -22.42058 -21.35386 -20.34613 -19.69437 -18.65939 -17.90338 -17.48649 -16.99533 -16.55052 -16.33472 -15.47608 -15.34509 -15.11621 -14.90835 -14.82731 -14.27540 -14.05651 -13.77189 -13.40289 -13.32039 -12.92238 -12.73346 -12.58598 -12.46439 -12.21260 -11.97066 -11.58819 -11.45336 -11.08700 -11.05808 -11.02970 -10.97028 -10.77789 -10.71877 -10.32470 -10.00830 -9.84287 -9.47711 -9.17947 -9.08751 -8.74714 -8.27701 -6.53177 -6.24781 -3.95227 1.10851 1.85608 2.25612 2.60225 2.96717 3.01389 3.16600 3.20420 3.25890 3.29964 3.66100 3.79428 4.17847 4.19155 4.22054 4.30966 4.57261 4.63986 4.91495 5.05088 5.10670 5.11566 5.23730 5.30445 5.44544 5.49104 5.54555 5.61881 5.76365 5.77903 5.81055 5.86086 5.94161 5.98866 6.11647 6.18385 6.44990 6.57409 7.14614 7.57100 7.61638 7.64438 7.96554 8.32573 8.54357 9.20972 10.82613 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.002921 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.004541 B = 9584.757591 C =10769.916442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 H 0.081 0.919 4 C -0.135 4.135 5 C 0.134 3.866 6 H 0.114 0.886 7 N -0.728 5.728 8 C 0.535 3.465 9 O -0.515 6.515 10 C -0.154 4.154 11 S -0.059 6.059 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.086 3.914 21 N -0.598 5.598 22 C 0.631 3.369 23 O -0.512 6.512 24 C 0.151 3.849 25 N -0.464 5.464 26 C 0.197 3.803 27 N -0.396 5.396 28 H 0.454 0.546 29 N -0.265 5.265 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.399 0.601 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.269 -1.489 5.677 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 H 0.099 0.901 4 C -0.173 4.173 5 C 0.027 3.973 6 H 0.132 0.868 7 N -0.382 5.382 8 C 0.322 3.678 9 O -0.389 6.389 10 C -0.305 4.305 11 S 0.168 5.832 12 C -0.684 4.684 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.744 3.256 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.038 4.038 21 N -0.333 5.333 22 C 0.415 3.585 23 O -0.384 6.384 24 C -0.130 4.130 25 N -0.188 5.188 26 C -0.101 4.101 27 N -0.119 5.119 28 H 0.301 0.699 29 N -0.107 5.107 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -21.395 -2.906 5.342 22.242 hybrid contribution 1.163 2.034 0.674 2.438 sum -20.232 -0.872 6.017 21.125 Atomic orbital electron populations 1.22150 0.94225 1.02540 1.03208 1.21629 0.94980 0.96475 0.83601 0.90070 1.23100 0.97129 1.00415 0.96697 1.21994 0.84779 0.95200 0.95280 0.86845 1.45945 1.04896 1.09871 1.77515 1.20313 0.83574 0.89163 0.74780 1.90698 1.85895 1.14893 1.47424 1.23537 0.98872 1.03133 1.04937 1.85338 0.91636 1.09603 1.96652 1.22876 0.92737 0.93925 1.58867 0.90940 1.24986 0.97832 0.96207 0.94501 1.70018 1.17377 1.16032 1.46905 0.86174 0.80078 0.80916 0.78385 1.20285 1.20723 1.19650 1.23100 0.96383 0.87773 0.96524 1.48251 1.51992 1.29047 1.04053 1.15825 0.80016 0.83008 0.79646 1.90819 1.38991 1.25933 1.82653 1.23698 1.01957 0.94690 0.92612 1.71287 1.20908 1.23642 1.03008 1.26741 0.95420 0.88653 0.99308 1.45237 1.38710 1.24494 1.03479 0.69930 1.74457 1.15981 1.13487 1.06797 0.92321 0.91042 0.91329 0.88848 0.88671 0.76713 0.89357 0.89143 0.92192 0.90265 0.87917 0.75286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.11 37.16 0.34 -1.03 16 2 C 0.14 1.24 3.44 -66.95 -0.23 1.01 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.14 -0.97 6.06 -24.90 -0.15 -1.12 16 5 C 0.13 1.40 3.37 -65.78 -0.22 1.18 16 6 H 0.11 1.27 7.63 -51.93 -0.40 0.87 16 7 N -0.73 -9.13 5.20 -51.73 -0.27 -9.40 16 8 C 0.54 9.45 7.85 -10.99 -0.09 9.36 16 9 O -0.52 -10.90 15.55 5.56 0.09 -10.81 16 10 C -0.15 -3.05 6.16 36.00 0.22 -2.82 16 11 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 12 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 13 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 14 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 16 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.09 0.96 5.83 -2.47 -0.01 0.94 16 21 N -0.60 -6.90 3.07 -164.02 -0.50 -7.40 16 22 C 0.63 9.06 7.66 -12.32 -0.09 8.97 16 23 O -0.51 -8.63 16.15 5.31 0.09 -8.55 16 24 C 0.15 2.06 7.81 -156.36 -1.22 0.84 16 25 N -0.46 -6.00 11.41 -12.37 -0.14 -6.14 16 26 C 0.20 1.51 13.14 -90.48 -1.19 0.33 16 27 N -0.40 -3.06 6.93 29.56 0.20 -2.85 16 28 H 0.45 1.71 8.96 -190.21 -1.70 0.00 16 29 N -0.27 -3.11 9.39 32.07 0.30 -2.81 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.77 6.91 -51.93 -0.36 0.41 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.54 7.86 -51.93 -0.41 0.13 16 35 H 0.40 4.19 8.64 -40.82 -0.35 3.84 16 36 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 37 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.40 6.20 -51.93 -0.32 1.08 16 41 H 0.23 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -39.39 365.16 -10.15 -49.55 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.47 Total: 0.78 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.45 Total: 4.79 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.33 Total: -53.73 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.17 Total: -19.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.39 -10.15 -49.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281174180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.994 kcal (2) G-P(sol) polarization free energy of solvation -39.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds