Wall clock time and date at job start Tue Mar 31 2020 23:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.87357 * 2 1 4 4 C 1.54326 * 109.88576 * 238.98081 * 2 1 3 5 5 C 1.55154 * 102.93996 * 218.23169 * 4 2 1 6 6 H 1.09004 * 111.00069 * 153.61528 * 5 4 2 7 7 N 1.46499 * 111.00732 * 277.42444 * 5 4 2 8 8 C 1.34778 * 120.00278 * 201.82008 * 7 5 4 9 9 O 1.21278 * 119.99748 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00209 * 180.02562 * 8 7 5 11 11 S 1.80999 * 109.47181 * 180.02562 * 10 8 7 12 12 C 1.76199 * 99.99825 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00405 * 0.02562 * 12 11 10 14 14 C 1.38803 * 119.99855 * 179.72221 * 12 11 10 15 15 N 1.31634 * 119.99756 * 0.27728 * 14 12 11 16 16 Si 1.86803 * 120.00005 * 180.27923 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00123 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00074 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99873 * 16 14 12 20 20 C 1.54916 * 101.61922 * 35.52313 * 5 4 2 21 21 N 1.47020 * 110.01426 * 121.08959 * 2 1 3 22 22 C 1.34773 * 125.65293 * 298.40618 * 21 2 1 23 23 O 1.21559 * 119.99722 * 359.97438 * 22 21 2 24 24 C 1.47868 * 120.00611 * 179.97438 * 22 21 2 25 25 N 1.34543 * 126.05166 * 179.97438 * 24 22 21 26 26 C 1.30871 * 107.27043 * 179.97438 * 25 24 22 27 27 N 1.34584 * 107.62619 * 359.97438 * 26 25 24 28 28 H 0.96993 * 125.75006 * 179.97438 * 27 26 25 29 29 N 1.28855 * 108.50156 * 359.73387 * 27 26 25 30 30 H 1.09002 * 109.46446 * 181.02025 * 1 2 3 31 31 H 1.08994 * 109.47345 * 301.01920 * 1 2 3 32 32 H 1.08998 * 109.46672 * 61.02448 * 1 2 3 33 33 H 1.08997 * 110.71867 * 99.86847 * 4 2 1 34 34 H 1.08997 * 110.87236 * 336.66671 * 4 2 1 35 35 H 0.97000 * 119.99972 * 21.82364 * 7 5 4 36 36 H 1.08999 * 109.47278 * 59.99800 * 10 8 7 37 37 H 1.09002 * 109.46837 * 300.00183 * 10 8 7 38 38 H 0.97000 * 119.99219 * 179.97438 * 15 14 12 39 39 H 1.08995 * 110.36461 * 81.80406 * 20 5 4 40 40 H 1.08998 * 110.36511 * 204.13213 * 20 5 4 41 41 H 1.07998 * 126.19030 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0550 -0.7479 -1.2437 5 6 3.2901 -1.5100 -0.6952 6 1 3.4893 -2.4058 -1.2835 7 7 4.4681 -0.6400 -0.6534 8 6 5.7035 -1.1785 -0.6390 9 8 5.8400 -2.3834 -0.6611 10 6 6.9151 -0.2836 -0.5954 11 16 8.4143 -1.2978 -0.5861 12 6 9.6394 -0.0324 -0.5352 13 1 9.3429 1.0060 -0.5193 14 6 10.9854 -0.3703 -0.5092 15 7 11.3467 -1.6359 -0.5281 16 14 12.2841 0.9711 -0.4473 17 1 12.5934 1.2957 0.9683 18 1 13.5166 0.4985 -1.1276 19 1 11.7745 2.1854 -1.1337 20 6 2.8203 -1.8777 0.7344 21 7 2.0332 -0.7133 1.1830 22 6 1.8126 -0.3617 2.4652 23 8 1.1464 0.6229 2.7193 24 6 2.3807 -1.1733 3.5629 25 7 2.2384 -0.9351 4.8794 26 6 2.8870 -1.8761 5.5169 27 7 3.4283 -2.6941 4.5953 28 1 3.9653 -3.4802 4.7809 29 7 3.1087 -2.2598 3.4250 30 1 -0.3632 -1.0276 0.0183 31 1 -0.3634 0.5295 0.8806 32 1 -0.3632 0.4978 -0.8990 33 1 2.3504 -0.0433 -2.0211 34 1 1.3077 -1.4457 -1.6214 35 1 4.3589 0.3237 -0.6361 36 1 6.8836 0.3271 0.3069 37 1 6.9203 0.3639 -1.4723 38 1 12.2874 -1.8719 -0.5103 39 1 2.1964 -2.7711 0.7106 40 1 3.6789 -2.0308 1.3882 41 1 2.9725 -1.9780 6.5886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281174180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:53 Heat of formation + Delta-G solvation = -1.204852 kcal Electronic energy + Delta-G solvation = -26870.547112 eV Core-core repulsion = 22912.797608 eV Total energy + Delta-G solvation = -3957.749504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.50320 -41.56238 -40.33553 -38.59783 -35.19868 -34.59095 -34.47155 -33.60026 -31.97048 -31.83822 -29.80760 -27.66179 -27.01699 -26.07899 -23.99635 -23.37046 -22.30466 -21.51378 -20.50162 -19.85265 -19.44663 -18.38413 -18.05042 -17.71239 -17.41943 -16.88727 -16.61625 -16.51007 -16.10851 -15.83226 -15.73595 -15.09996 -14.80603 -14.73502 -14.44530 -14.36702 -13.77474 -13.60719 -13.35373 -13.23814 -13.17309 -12.95415 -12.90060 -12.63644 -12.33957 -12.26714 -11.82463 -11.80422 -11.70991 -11.58974 -11.33435 -11.15347 -10.94360 -10.80894 -10.30035 -10.28422 -9.72660 -8.66158 -8.35926 -6.13003 0.22672 1.10713 1.26170 1.40936 1.45560 1.46935 1.56482 1.60457 1.93564 2.18171 2.24298 2.28800 2.97841 2.98258 3.30516 3.40899 3.47410 3.54949 3.92029 3.96490 3.99903 4.17229 4.28164 4.34371 4.41829 4.50110 4.62467 4.69028 4.79844 4.89068 4.91448 4.95800 5.08556 5.20408 5.28268 5.41012 5.41565 5.50189 5.90462 6.18723 6.19051 6.46510 6.77354 7.05784 7.05897 7.22434 8.73079 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.002921 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.004541 B = 9584.757591 C =10769.916442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 H 0.079 0.921 4 C -0.115 4.115 5 C 0.130 3.870 6 H 0.112 0.888 7 N -0.705 5.705 8 C 0.540 3.460 9 O -0.555 6.555 10 C -0.133 4.133 11 S -0.140 6.140 12 C -0.550 4.550 13 H 0.079 0.921 14 C 0.016 3.984 15 N -0.909 5.909 16 Si 0.995 3.005 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.260 1.260 20 C 0.090 3.910 21 N -0.592 5.592 22 C 0.622 3.378 23 O -0.550 6.550 24 C 0.122 3.878 25 N -0.513 5.513 26 C 0.219 3.781 27 N -0.385 5.385 28 H 0.470 0.530 29 N -0.278 5.278 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.412 0.588 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.271 0.729 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.893 -0.604 5.406 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.025 3.975 3 H 0.097 0.903 4 C -0.153 4.153 5 C 0.025 3.975 6 H 0.130 0.870 7 N -0.358 5.358 8 C 0.326 3.674 9 O -0.432 6.432 10 C -0.284 4.284 11 S 0.087 5.913 12 C -0.697 4.697 13 H 0.097 0.903 14 C -0.189 4.189 15 N -0.545 5.545 16 Si 0.817 3.183 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.033 4.033 21 N -0.325 5.325 22 C 0.407 3.593 23 O -0.426 6.426 24 C -0.157 4.157 25 N -0.238 5.238 26 C -0.078 4.078 27 N -0.110 5.110 28 H 0.321 0.679 29 N -0.121 5.121 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.248 0.752 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -22.045 -2.026 5.054 22.707 hybrid contribution 1.261 1.702 0.831 2.276 sum -20.784 -0.324 5.885 21.603 Atomic orbital electron populations 1.22087 0.93493 1.02738 1.03082 1.21896 0.95641 0.96533 0.83428 0.90285 1.23107 0.95553 1.00668 0.95931 1.22179 0.84801 0.95403 0.95144 0.86989 1.45719 1.03919 1.10882 1.75329 1.19923 0.84459 0.88165 0.74855 1.90689 1.86512 1.16298 1.49737 1.23389 0.96316 1.02399 1.06333 1.85443 0.95925 1.12998 1.96942 1.23210 0.93454 0.94200 1.58878 0.90264 1.26068 1.00303 0.98757 0.93737 1.70169 1.18020 1.18425 1.47928 0.85002 0.76764 0.77778 0.78756 1.19443 1.20121 1.18355 1.23048 0.95809 0.88255 0.96219 1.48323 1.51243 1.29021 1.03951 1.16108 0.79788 0.82802 0.80615 1.90778 1.40865 1.27571 1.83359 1.23681 1.03391 0.95648 0.92989 1.71240 1.23238 1.26199 1.03163 1.27669 0.92640 0.86534 1.00917 1.45281 1.38241 1.24850 1.02599 0.67877 1.74382 1.15905 1.13140 1.08654 0.91831 0.93903 0.88767 0.86703 0.86089 0.75173 0.88275 0.87218 0.91953 0.88764 0.90372 0.70138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.11 71.98 0.66 -1.71 16 2 C 0.13 2.08 3.44 45.34 0.16 2.24 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.11 -1.27 6.06 31.78 0.19 -1.08 16 5 C 0.13 2.46 3.37 46.38 0.16 2.62 16 6 H 0.11 2.29 7.63 -2.39 -0.02 2.27 16 7 N -0.71 -16.48 5.20 -435.96 -2.27 -18.75 16 8 C 0.54 18.72 7.85 87.66 0.69 19.40 16 9 O -0.55 -23.67 15.55 -3.02 -0.05 -23.72 16 10 C -0.13 -5.18 6.16 71.23 0.44 -4.74 16 11 S -0.14 -7.61 20.57 -56.49 -1.16 -8.78 16 12 C -0.55 -31.18 9.50 67.96 0.65 -30.54 16 13 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 14 C 0.02 0.92 5.49 84.86 0.47 1.39 16 15 N -0.91 -55.02 13.22 21.65 0.29 -54.74 16 16 Si 1.00 43.32 29.55 68.60 2.03 45.34 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 18 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 20 C 0.09 1.93 5.83 86.84 0.51 2.44 16 21 N -0.59 -13.34 3.07 -791.12 -2.43 -15.77 16 22 C 0.62 18.32 7.66 86.79 0.66 18.99 16 23 O -0.55 -19.34 16.15 -3.90 -0.06 -19.41 16 24 C 0.12 3.41 7.81 137.13 1.07 4.48 16 25 N -0.51 -13.24 11.41 -193.04 -2.20 -15.45 16 26 C 0.22 3.02 13.14 180.30 2.37 5.39 16 27 N -0.38 -5.50 6.93 -60.38 -0.42 -5.92 16 28 H 0.47 2.84 8.96 -219.80 -1.97 0.87 16 29 N -0.28 -6.48 9.39 -52.44 -0.49 -6.97 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.92 6.91 -2.39 -0.02 0.90 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.12 0.84 7.86 -2.39 -0.02 0.82 16 35 H 0.41 7.68 8.64 -92.71 -0.80 6.88 16 36 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 37 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 38 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.13 6.20 -2.39 -0.01 2.12 16 41 H 0.28 0.28 8.06 -2.91 -0.02 0.25 16 Total: -1.00 -90.43 365.16 -0.43 -90.86 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -1.67 Total: 14.42 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 8.01 Total: 18.88 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -7.52 Total: -117.60 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.11 Total: -43.13 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.16 Total: -8.78 kcal Total: -90.43 -0.43 -90.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281174180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.658 kcal (2) G-P(sol) polarization free energy of solvation -90.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds