Wall clock time and date at job start Tue Mar 31 2020 23:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.99583 * 2 1 4 4 C 1.54318 * 109.88284 * 238.90415 * 2 1 3 5 5 H 1.09003 * 110.72326 * 336.75229 * 4 2 1 6 6 N 1.46504 * 110.71949 * 100.02781 * 4 2 1 7 7 C 1.34773 * 119.99769 * 205.00076 * 6 4 2 8 8 O 1.21559 * 119.99941 * 359.97438 * 7 6 4 9 9 C 1.47870 * 119.99805 * 179.97438 * 7 6 4 10 10 N 1.34544 * 126.04875 * 359.69030 * 9 7 6 11 11 C 1.30872 * 107.27124 * 179.87172 * 10 9 7 12 12 N 1.34589 * 107.62270 * 0.38761 * 11 10 9 13 13 H 0.96998 * 125.74766 * 179.73272 * 12 11 10 14 14 N 1.28850 * 108.50117 * 359.75049 * 12 11 10 15 15 C 1.55160 * 102.94100 * 218.38852 * 4 2 1 16 16 C 1.54909 * 101.58106 * 35.50559 * 15 4 2 17 17 N 1.47026 * 109.88078 * 121.09412 * 2 1 3 18 18 C 1.34771 * 125.65100 * 298.09265 * 17 2 1 19 19 O 1.21278 * 120.00143 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99931 * 180.02562 * 18 17 2 21 21 S 1.81003 * 109.46955 * 180.02562 * 20 18 17 22 22 C 1.76194 * 99.99790 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00153 * 359.97438 * 22 21 20 24 24 C 1.38804 * 119.99728 * 180.02562 * 22 21 20 25 25 N 1.31627 * 120.00001 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99986 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47031 * 59.99347 * 26 24 22 28 28 H 1.48497 * 109.47081 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46938 * 299.99681 * 26 24 22 30 30 H 1.09004 * 109.46790 * 300.35432 * 1 2 3 31 31 H 1.08999 * 109.46948 * 60.35467 * 1 2 3 32 32 H 1.08998 * 109.46799 * 180.35791 * 1 2 3 33 33 H 0.96990 * 119.99803 * 25.00022 * 6 4 2 34 34 H 1.07999 * 126.19116 * 180.16316 * 11 10 9 35 35 H 1.09006 * 111.00068 * 153.57567 * 15 4 2 36 36 H 1.08992 * 111.00480 * 277.38794 * 15 4 2 37 37 H 1.08996 * 110.36158 * 204.14752 * 16 15 4 38 38 H 1.09002 * 110.36956 * 81.83034 * 16 15 4 39 39 H 1.09000 * 109.46686 * 299.99326 * 20 18 17 40 40 H 1.08989 * 109.47272 * 60.00000 * 20 18 17 41 41 H 0.97003 * 119.99609 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4555 0.1961 -2.2875 7 6 2.4582 -0.1883 -3.5792 8 8 2.1287 -1.3197 -3.8773 9 6 2.8621 0.7663 -4.6338 10 7 3.2417 2.0429 -4.4430 11 6 3.5195 2.5456 -5.6190 12 7 3.3033 1.5833 -6.5348 13 1 3.4243 1.6753 -7.4928 14 7 2.9083 0.5194 -5.9246 15 6 3.2877 -1.5142 -0.6923 16 6 2.8145 -1.8794 0.7368 17 7 2.0300 -0.7141 1.1840 18 6 1.8122 -0.3588 2.4657 19 8 1.1525 0.6271 2.7179 20 6 2.3884 -1.1867 3.5854 21 16 1.9232 -0.4579 5.1756 22 6 2.7053 -1.5932 6.2728 23 1 3.2619 -2.4300 5.8775 24 6 2.6051 -1.4126 7.6454 25 7 1.9263 -0.3930 8.1273 26 14 3.4348 -2.6158 8.8088 27 1 4.8977 -2.6223 8.5535 28 1 3.1795 -2.2033 10.2123 29 1 2.8873 -3.9780 8.5853 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3633 -1.0276 0.0064 33 1 2.7188 1.0988 -2.0495 34 1 3.8573 3.5517 -5.8189 35 1 3.4852 -2.4110 -1.2796 36 1 4.1656 -0.8690 -0.6609 37 1 3.6716 -2.0338 1.3922 38 1 2.1887 -2.7715 0.7129 39 1 1.9984 -2.2027 3.5238 40 1 3.4747 -1.2086 3.4992 41 1 1.8566 -0.2667 9.0865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282377049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:17 Heat of formation + Delta-G solvation = 25.732797 kcal Electronic energy + Delta-G solvation = -26071.412385 eV Core-core repulsion = 22114.830985 eV Total energy + Delta-G solvation = -3956.581400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.99303 -40.54314 -39.32208 -37.31479 -34.65019 -33.89388 -32.41599 -31.97654 -31.69927 -30.89652 -28.56321 -26.34716 -25.47071 -24.42696 -23.44861 -22.86504 -21.33855 -20.91293 -19.60611 -18.90986 -17.70987 -17.48574 -17.11386 -16.85822 -16.30289 -15.92558 -15.33955 -14.96553 -14.86422 -14.78763 -14.35375 -13.98613 -13.91588 -13.77838 -12.93757 -12.84618 -12.72464 -12.54784 -12.50413 -12.16077 -11.78616 -11.66445 -11.41784 -11.26488 -11.08188 -11.02823 -11.02552 -10.93258 -10.75572 -10.63000 -10.29104 -9.81225 -9.47038 -9.30957 -9.04535 -8.53988 -8.22459 -6.48787 -6.20175 -3.90765 0.88260 1.56479 1.94656 2.56277 2.93312 2.97864 3.07307 3.24819 3.27141 3.30420 3.56380 3.65129 4.10603 4.17015 4.22167 4.30155 4.36169 4.81102 4.98544 5.00774 5.08834 5.14904 5.26629 5.38915 5.47497 5.53587 5.57043 5.65494 5.67073 5.74510 5.80419 5.87798 5.94528 6.10286 6.15518 6.16886 6.26340 6.49470 6.99780 7.44236 7.60621 7.66084 7.76995 8.36443 8.56394 9.25008 10.87153 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030174 B = 0.001950 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.739512 B =14357.898831 C =14557.200803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.080 0.920 4 C 0.138 3.862 5 H 0.113 0.887 6 N -0.698 5.698 7 C 0.619 3.381 8 O -0.514 6.514 9 C 0.146 3.854 10 N -0.484 5.484 11 C 0.201 3.799 12 N -0.400 5.400 13 H 0.454 0.546 14 N -0.247 5.247 15 C -0.145 4.145 16 C 0.102 3.898 17 N -0.621 5.621 18 C 0.551 3.449 19 O -0.512 6.512 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.413 0.587 34 H 0.232 0.768 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 3.930 -30.732 31.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.098 0.902 4 C 0.033 3.967 5 H 0.131 0.869 6 N -0.350 5.350 7 C 0.401 3.599 8 O -0.386 6.386 9 C -0.134 4.134 10 N -0.210 5.210 11 C -0.096 4.096 12 N -0.123 5.123 13 H 0.301 0.699 14 N -0.087 5.087 15 C -0.184 4.184 16 C -0.022 4.022 17 N -0.360 5.360 18 C 0.340 3.660 19 O -0.386 6.386 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.250 0.750 34 H 0.248 0.752 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.125 4.201 -30.083 30.535 hybrid contribution 1.731 -1.054 -0.271 2.044 sum 4.855 3.147 -30.354 30.901 Atomic orbital electron populations 1.22149 0.93934 1.02726 1.03281 1.21553 0.95241 0.96355 0.83908 0.90161 1.22154 0.97439 0.90917 0.86205 0.86936 1.45583 1.67788 1.16885 1.04779 1.16199 0.77720 0.84951 0.81047 1.90858 1.47009 1.18810 1.81909 1.23771 1.06564 0.92125 0.90952 1.71317 1.17647 1.07189 1.24850 1.26658 1.00797 0.98188 0.84006 1.45290 1.46855 1.07873 1.12318 0.69931 1.74382 1.16338 1.10265 1.07681 1.23241 0.98006 1.01605 0.95560 1.22297 0.95926 0.89201 0.94756 1.48519 1.54132 1.28729 1.04587 1.20016 0.79723 0.85051 0.81210 1.90698 1.38649 1.26735 1.82470 1.23517 1.03669 1.02704 0.99872 1.85385 1.69936 1.37405 0.90563 1.22821 1.38540 1.13917 0.93103 0.90970 1.24988 0.95239 0.95987 0.97342 1.70008 1.38591 1.27963 1.13717 0.86229 0.79641 0.80564 0.79094 1.19946 1.20825 1.19931 0.90323 0.91894 0.92184 0.75036 0.75196 0.89115 0.89914 0.89763 0.90875 0.89216 0.89271 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.11 37.16 0.34 -1.66 16 2 C 0.13 1.60 3.21 -66.95 -0.21 1.39 16 3 H 0.08 0.98 7.72 -51.93 -0.40 0.57 16 4 C 0.14 1.38 2.84 -66.09 -0.19 1.19 16 5 H 0.11 1.19 7.26 -51.93 -0.38 0.82 16 6 N -0.70 -6.61 5.17 -52.96 -0.27 -6.88 16 7 C 0.62 7.06 7.83 -12.32 -0.10 6.97 16 8 O -0.51 -7.37 16.73 5.31 0.09 -7.28 16 9 C 0.15 1.49 7.96 -156.36 -1.24 0.24 16 10 N -0.48 -3.87 11.09 -12.36 -0.14 -4.01 16 11 C 0.20 0.75 13.14 -90.48 -1.19 -0.44 16 12 N -0.40 -1.59 6.93 29.57 0.21 -1.39 16 13 H 0.45 -0.20 8.96 -190.21 -1.71 -1.90 16 14 N -0.25 -2.27 12.30 32.07 0.39 -1.88 16 15 C -0.14 -1.33 6.77 -24.58 -0.17 -1.50 16 16 C 0.10 1.09 6.69 -2.53 -0.02 1.07 16 17 N -0.62 -8.77 3.06 -163.02 -0.50 -9.27 16 18 C 0.55 10.43 7.66 -10.98 -0.08 10.34 16 19 O -0.51 -11.51 14.92 5.56 0.08 -11.43 16 20 C -0.15 -2.99 5.16 36.01 0.19 -2.80 16 21 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 22 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 23 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 24 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 25 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 26 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 30 H 0.08 1.19 6.90 -51.93 -0.36 0.83 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.41 3.45 8.08 -40.82 -0.33 3.13 16 34 H 0.23 -0.35 8.06 -52.49 -0.42 -0.77 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.87 7.47 -51.93 -0.39 0.48 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 40 H 0.09 1.68 7.84 -51.92 -0.41 1.27 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -39.35 367.49 -10.05 -49.40 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.47 Total: -1.81 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -2.48 Total: 1.86 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.42 Total: -48.85 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.17 Total: -18.72 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.35 -10.05 -49.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282377049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.135 kcal (2) G-P(sol) polarization free energy of solvation -39.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds