Wall clock time and date at job start Tue Mar 31 2020 23:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.99583 * 2 1 4 4 C 1.54318 * 109.88284 * 238.90415 * 2 1 3 5 5 H 1.09003 * 110.72326 * 336.75229 * 4 2 1 6 6 N 1.46504 * 110.71949 * 100.02781 * 4 2 1 7 7 C 1.34773 * 119.99769 * 205.00076 * 6 4 2 8 8 O 1.21559 * 119.99941 * 359.97438 * 7 6 4 9 9 C 1.47870 * 119.99805 * 179.97438 * 7 6 4 10 10 N 1.34544 * 126.04875 * 359.69030 * 9 7 6 11 11 C 1.30872 * 107.27124 * 179.87172 * 10 9 7 12 12 N 1.34589 * 107.62270 * 0.38761 * 11 10 9 13 13 H 0.96998 * 125.74766 * 179.73272 * 12 11 10 14 14 N 1.28850 * 108.50117 * 359.75049 * 12 11 10 15 15 C 1.55160 * 102.94100 * 218.38852 * 4 2 1 16 16 C 1.54909 * 101.58106 * 35.50559 * 15 4 2 17 17 N 1.47026 * 109.88078 * 121.09412 * 2 1 3 18 18 C 1.34771 * 125.65100 * 298.09265 * 17 2 1 19 19 O 1.21278 * 120.00143 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99931 * 180.02562 * 18 17 2 21 21 S 1.81003 * 109.46955 * 180.02562 * 20 18 17 22 22 C 1.76194 * 99.99790 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00153 * 359.97438 * 22 21 20 24 24 C 1.38804 * 119.99728 * 180.02562 * 22 21 20 25 25 N 1.31627 * 120.00001 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99986 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47031 * 59.99347 * 26 24 22 28 28 H 1.48497 * 109.47081 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46938 * 299.99681 * 26 24 22 30 30 H 1.09004 * 109.46790 * 300.35432 * 1 2 3 31 31 H 1.08999 * 109.46948 * 60.35467 * 1 2 3 32 32 H 1.08998 * 109.46799 * 180.35791 * 1 2 3 33 33 H 0.96990 * 119.99803 * 25.00022 * 6 4 2 34 34 H 1.07999 * 126.19116 * 180.16316 * 11 10 9 35 35 H 1.09006 * 111.00068 * 153.57567 * 15 4 2 36 36 H 1.08992 * 111.00480 * 277.38794 * 15 4 2 37 37 H 1.08996 * 110.36158 * 204.14752 * 16 15 4 38 38 H 1.09002 * 110.36956 * 81.83034 * 16 15 4 39 39 H 1.09000 * 109.46686 * 299.99326 * 20 18 17 40 40 H 1.08989 * 109.47272 * 60.00000 * 20 18 17 41 41 H 0.97003 * 119.99609 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4555 0.1961 -2.2875 7 6 2.4582 -0.1883 -3.5792 8 8 2.1287 -1.3197 -3.8773 9 6 2.8621 0.7663 -4.6338 10 7 3.2417 2.0429 -4.4430 11 6 3.5195 2.5456 -5.6190 12 7 3.3033 1.5833 -6.5348 13 1 3.4243 1.6753 -7.4928 14 7 2.9083 0.5194 -5.9246 15 6 3.2877 -1.5142 -0.6923 16 6 2.8145 -1.8794 0.7368 17 7 2.0300 -0.7141 1.1840 18 6 1.8122 -0.3588 2.4657 19 8 1.1525 0.6271 2.7179 20 6 2.3884 -1.1867 3.5854 21 16 1.9232 -0.4579 5.1756 22 6 2.7053 -1.5932 6.2728 23 1 3.2619 -2.4300 5.8775 24 6 2.6051 -1.4126 7.6454 25 7 1.9263 -0.3930 8.1273 26 14 3.4348 -2.6158 8.8088 27 1 4.8977 -2.6223 8.5535 28 1 3.1795 -2.2033 10.2123 29 1 2.8873 -3.9780 8.5853 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3633 -1.0276 0.0064 33 1 2.7188 1.0988 -2.0495 34 1 3.8573 3.5517 -5.8189 35 1 3.4852 -2.4110 -1.2796 36 1 4.1656 -0.8690 -0.6609 37 1 3.6716 -2.0338 1.3922 38 1 2.1887 -2.7715 0.7129 39 1 1.9984 -2.2027 3.5238 40 1 3.4747 -1.2086 3.4992 41 1 1.8566 -0.2667 9.0865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282377049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:17 Heat of formation + Delta-G solvation = -3.890741 kcal Electronic energy + Delta-G solvation = -26072.696958 eV Core-core repulsion = 22114.830985 eV Total energy + Delta-G solvation = -3957.865973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.46719 -41.58127 -40.40944 -38.55866 -35.55228 -34.57186 -34.48423 -32.84283 -32.46347 -31.94455 -30.00143 -27.64743 -27.20824 -25.21092 -23.97596 -23.84054 -22.21585 -21.70323 -20.47716 -19.92754 -19.43089 -18.29060 -18.18906 -17.51121 -17.36948 -16.94458 -16.86302 -16.44012 -16.01168 -15.80011 -15.59704 -15.21544 -15.11045 -14.74949 -14.48872 -14.07137 -13.94914 -13.64794 -13.26292 -13.19839 -13.14796 -13.00831 -12.85296 -12.68996 -12.58969 -12.32169 -11.87036 -11.76501 -11.72721 -11.60051 -11.51389 -11.11449 -10.90595 -10.82614 -10.27515 -10.22543 -9.74325 -8.65490 -8.33057 -6.11140 0.26320 1.13095 1.19799 1.38667 1.45075 1.50046 1.57967 1.59157 2.01170 2.19991 2.27102 2.29754 3.00954 3.05812 3.17388 3.34285 3.49741 3.59017 3.87451 3.90704 4.04310 4.12936 4.18973 4.28206 4.28804 4.47839 4.55979 4.65601 4.73660 4.87258 4.89532 4.96476 5.03777 5.19182 5.23598 5.28850 5.40546 5.43176 5.92138 6.21073 6.25884 6.37464 6.86972 7.05581 7.08067 7.12930 8.75829 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030174 B = 0.001950 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.739512 B =14357.898831 C =14557.200803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.133 3.867 3 H 0.080 0.920 4 C 0.148 3.852 5 H 0.111 0.889 6 N -0.686 5.686 7 C 0.619 3.381 8 O -0.551 6.551 9 C 0.121 3.879 10 N -0.512 5.512 11 C 0.223 3.777 12 N -0.383 5.383 13 H 0.472 0.528 14 N -0.277 5.277 15 C -0.134 4.134 16 C 0.094 3.906 17 N -0.612 5.612 18 C 0.551 3.449 19 O -0.558 6.558 20 C -0.121 4.121 21 S -0.148 6.148 22 C -0.547 4.547 23 H 0.083 0.917 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.262 1.262 28 H -0.279 1.279 29 H -0.262 1.262 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.419 0.581 34 H 0.284 0.716 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 3.222 -32.751 33.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 H 0.097 0.903 4 C 0.043 3.957 5 H 0.129 0.871 6 N -0.339 5.339 7 C 0.402 3.598 8 O -0.426 6.426 9 C -0.159 4.159 10 N -0.239 5.239 11 C -0.074 4.074 12 N -0.108 5.108 13 H 0.323 0.677 14 N -0.118 5.118 15 C -0.172 4.172 16 C -0.028 4.028 17 N -0.347 5.347 18 C 0.339 3.661 19 O -0.436 6.436 20 C -0.272 4.272 21 S 0.079 5.921 22 C -0.694 4.694 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.186 1.186 28 H -0.204 1.204 29 H -0.187 1.187 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.257 0.743 34 H 0.299 0.701 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.051 3.493 -32.177 32.757 hybrid contribution 1.157 -0.747 0.125 1.383 sum 6.207 2.746 -32.051 32.762 Atomic orbital electron populations 1.22083 0.94160 1.02740 1.02603 1.21659 0.95081 0.96498 0.83852 0.90251 1.21988 0.97875 0.90610 0.85276 0.87124 1.45465 1.67129 1.17020 1.04263 1.16411 0.77005 0.84771 0.81573 1.90825 1.48883 1.20380 1.82527 1.23514 1.08471 0.92936 0.90948 1.71289 1.18985 1.06456 1.27159 1.27628 0.97942 0.99320 0.82526 1.45283 1.45435 1.06760 1.13371 0.67664 1.74276 1.17269 1.12567 1.07729 1.23200 0.97541 1.02123 0.94384 1.22618 0.96155 0.88311 0.95725 1.48393 1.53268 1.29489 1.03569 1.19712 0.79527 0.84403 0.82435 1.90685 1.40833 1.28608 1.83431 1.23322 1.04802 1.02895 0.96217 1.85561 1.71110 1.39686 0.95713 1.23166 1.38532 1.14050 0.93683 0.89896 1.26122 0.95751 0.97935 0.99313 1.70177 1.40226 1.30150 1.14165 0.85015 0.78811 0.77961 0.76281 1.18615 1.20430 1.18691 0.93512 0.90014 0.91788 0.74293 0.70087 0.87722 0.89315 0.88812 0.89267 0.87542 0.87378 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.11 71.98 0.66 -3.21 16 2 C 0.13 3.09 3.21 45.34 0.15 3.23 16 3 H 0.08 1.89 7.72 -2.39 -0.02 1.88 16 4 C 0.15 2.74 2.84 46.18 0.13 2.88 16 5 H 0.11 2.19 7.26 -2.39 -0.02 2.18 16 6 N -0.69 -12.31 5.17 -439.74 -2.28 -14.59 16 7 C 0.62 13.81 7.83 86.79 0.68 14.49 16 8 O -0.55 -15.73 16.73 -3.90 -0.07 -15.79 16 9 C 0.12 2.35 7.96 137.13 1.09 3.44 16 10 N -0.51 -7.25 11.09 -193.03 -2.14 -9.39 16 11 C 0.22 0.95 13.14 180.30 2.37 3.32 16 12 N -0.38 -2.14 6.93 -60.37 -0.42 -2.56 16 13 H 0.47 -1.68 8.96 -219.80 -1.97 -3.65 16 14 N -0.28 -4.79 12.30 -52.44 -0.65 -5.43 16 15 C -0.13 -2.15 6.77 31.99 0.22 -1.93 16 16 C 0.09 1.80 6.69 86.85 0.58 2.38 16 17 N -0.61 -16.65 3.06 -788.06 -2.41 -19.06 16 18 C 0.55 20.91 7.66 87.66 0.67 21.58 16 19 O -0.56 -26.00 14.92 -3.02 -0.05 -26.04 16 20 C -0.12 -4.88 5.16 71.24 0.37 -4.52 16 21 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 22 C -0.55 -31.25 9.50 67.96 0.65 -30.60 16 23 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 24 C 0.01 0.78 5.49 84.86 0.47 1.24 16 25 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 26 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 27 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 29 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 30 H 0.05 1.47 6.90 -2.38 -0.02 1.45 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.42 6.59 8.08 -92.72 -0.75 5.84 16 34 H 0.28 -2.24 8.06 -2.91 -0.02 -2.27 16 35 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.67 7.47 -2.39 -0.02 1.65 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 40 H 0.11 3.92 7.84 -2.40 -0.02 3.90 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -89.77 367.49 -0.45 -90.23 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -1.62 Total: 9.90 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 8.02 Total: 12.30 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -7.61 Total: -106.83 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.11 Total: -41.83 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -89.77 -0.45 -90.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282377049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.334 kcal (2) G-P(sol) polarization free energy of solvation -89.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds