Wall clock time and date at job start Tue Mar 31 2020 22:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99902 * 2 1 4 4 N 1.46507 * 109.46908 * 125.00260 * 3 2 1 5 5 C 1.34807 * 126.59526 * 124.71179 * 4 3 2 6 6 C 1.36596 * 106.84342 * 180.25973 * 5 4 3 7 7 C 1.47517 * 125.77404 * 180.02562 * 6 5 4 8 8 O 1.21595 * 120.00200 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00000 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00142 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47170 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47182 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00151 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.50708 * 119.99824 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.46813 * 180.02562 * 15 13 12 17 17 C 1.76197 * 99.99888 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00021 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00158 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99703 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00120 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47434 * 90.00068 * 21 19 17 23 23 H 1.48508 * 109.47121 * 210.00277 * 21 19 17 24 24 H 1.48501 * 109.47039 * 329.99832 * 21 19 17 25 25 N 1.34405 * 108.45326 * 0.02562 * 6 5 4 26 26 N 1.28755 * 109.52720 * 359.97438 * 25 6 5 27 27 H 1.07998 * 119.99766 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99963 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00150 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47183 * 5.00173 * 3 2 1 31 31 H 1.08998 * 109.46998 * 244.99931 * 3 2 1 32 32 H 1.08000 * 126.58208 * 0.26637 * 5 4 3 33 33 H 0.97002 * 120.00298 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.46798 * 299.99516 * 10 9 7 35 35 H 1.08998 * 109.46709 * 59.99894 * 10 9 7 36 36 H 1.09003 * 109.47479 * 299.99729 * 11 10 9 37 37 H 1.09001 * 109.46980 * 59.99961 * 11 10 9 38 38 H 0.97007 * 120.00046 * 0.02562 * 12 11 10 39 39 H 1.08990 * 109.47457 * 300.00500 * 15 13 12 40 40 H 1.08998 * 109.46512 * 60.00790 * 15 13 12 41 41 H 0.96994 * 119.99389 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3238 1.5443 1.0735 6 6 4.7915 1.4776 2.3552 7 6 6.1963 1.6508 2.7707 8 8 7.0535 1.8741 1.9377 9 7 6.5298 1.5604 4.0734 10 6 7.9249 1.7329 4.4861 11 6 8.0295 1.5838 6.0052 12 7 9.4246 1.7557 6.4178 13 6 9.7579 1.6662 7.7206 14 8 8.9030 1.4429 8.5513 15 6 11.1932 1.8425 8.1450 16 16 11.3170 1.6663 9.9421 17 6 13.0486 1.9123 10.1551 18 1 13.6764 2.1035 9.2975 19 6 13.6058 1.8612 11.4254 20 7 12.8405 1.6286 12.4709 21 14 15.4417 2.1213 11.6512 22 1 15.7151 3.5659 11.8598 23 1 15.9088 1.3533 12.8333 24 1 16.1609 1.6513 10.4399 25 7 3.7552 1.2275 3.1737 26 7 2.6731 1.1350 2.4822 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 4.9076 1.7315 0.1844 33 1 5.8460 1.3818 4.7378 34 1 8.5429 0.9761 4.0030 35 1 8.2701 2.7247 4.1941 36 1 7.4115 2.3408 6.4881 37 1 7.6840 0.5922 6.2975 38 1 10.1084 1.9347 5.7534 39 1 11.8105 1.0848 7.6626 40 1 11.5395 2.8337 7.8521 41 1 13.2300 1.5925 13.3585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282918942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:48 Heat of formation + Delta-G solvation = 46.017545 kcal Electronic energy + Delta-G solvation = -24285.567613 eV Core-core repulsion = 20329.865825 eV Total energy + Delta-G solvation = -3955.701788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.68025 -39.81650 -39.09361 -36.62329 -35.97335 -34.00259 -33.34538 -32.41446 -31.50366 -30.19236 -28.27969 -27.50099 -25.47802 -24.25121 -22.95527 -22.50852 -21.28227 -20.69849 -20.23957 -18.75756 -17.84357 -16.79955 -16.63054 -16.62102 -16.01970 -15.97827 -15.92177 -15.57181 -15.07447 -15.01405 -14.78875 -14.41030 -14.26186 -13.88352 -13.83394 -13.19165 -13.14672 -12.61004 -12.55293 -12.39081 -12.23180 -12.02365 -11.78428 -11.63756 -11.04934 -11.01151 -10.95548 -10.75710 -10.59263 -10.36077 -9.80745 -9.80274 -9.45703 -9.41669 -9.06081 -8.95386 -8.22683 -6.48858 -6.20397 -3.90987 0.63871 1.06660 1.28090 1.85457 2.55050 2.91515 3.07547 3.13631 3.23853 3.30140 3.35999 3.67354 3.74362 3.83108 3.95853 4.21638 4.22465 4.26135 4.42324 4.53559 4.66086 4.83101 4.85750 5.08589 5.14884 5.15549 5.18596 5.30291 5.60111 5.67345 5.71504 5.74186 5.78259 5.87831 5.90347 6.00912 6.15097 6.52847 7.04153 7.49170 7.60939 7.64848 7.79346 8.36642 8.57596 9.25034 10.87080 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.046401 B = 0.001348 C = 0.001317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.296851 B =20767.733906 C =21259.407566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.185 4.185 3 C 0.151 3.849 4 N -0.359 5.359 5 C 0.095 3.905 6 C -0.104 4.104 7 C 0.609 3.391 8 O -0.538 6.538 9 N -0.711 5.711 10 C 0.110 3.890 11 C 0.110 3.890 12 N -0.736 5.736 13 C 0.534 3.466 14 O -0.515 6.515 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 N -0.204 5.204 26 N -0.055 5.055 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.206 0.794 33 H 0.412 0.588 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.401 0.599 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.188 -0.553 -30.857 38.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.204 4.204 3 C 0.030 3.970 4 N -0.144 5.144 5 C -0.062 4.062 6 C -0.243 4.243 7 C 0.393 3.607 8 O -0.414 6.414 9 N -0.363 5.363 10 C -0.014 4.014 11 C -0.015 4.015 12 N -0.392 5.392 13 C 0.320 3.680 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 N -0.078 5.078 26 N -0.035 5.035 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.223 0.777 33 H 0.248 0.752 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.235 0.765 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.147 -1.064 -28.881 37.660 hybrid contribution 2.792 0.583 -1.684 3.312 sum -21.355 -0.481 -30.564 37.289 Atomic orbital electron populations 1.24033 0.95466 1.02995 0.95749 1.22851 0.96407 0.97296 1.03846 1.21152 0.91956 0.98386 0.85463 1.50599 1.06625 1.47936 1.09193 1.23417 0.84623 0.97456 1.00665 1.21390 0.95251 1.17021 0.90637 1.16667 0.85012 0.76526 0.82500 1.90830 1.49353 1.49608 1.51591 1.45550 1.10403 1.72343 1.07970 1.21506 0.82381 1.03150 0.94355 1.21325 0.84586 1.03055 0.92551 1.45795 1.08789 1.75962 1.08671 1.20320 0.90880 0.75546 0.81271 1.90713 1.51039 1.46193 1.50918 1.23530 0.94490 1.05001 1.07369 1.85406 1.10968 1.93716 0.93243 1.22873 0.92925 1.56697 0.95926 0.90886 1.24990 0.99107 0.94575 0.94866 1.70021 1.35576 1.45836 0.98870 0.86168 0.83014 0.78377 0.77941 1.20272 1.20756 1.19682 1.74675 0.96408 1.09807 1.26931 1.82058 1.16703 1.21421 0.83335 0.87252 0.87809 0.86371 0.87833 0.86685 0.77728 0.75163 0.90316 0.90324 0.90755 0.90762 0.76501 0.89061 0.89066 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.32 14.32 29.01 0.42 0.09 16 2 C -0.19 -0.54 9.72 -36.02 -0.35 -0.89 16 3 C 0.15 0.33 6.98 -5.19 -0.04 0.29 16 4 N -0.36 -2.18 3.68 -62.24 -0.23 -2.41 16 5 C 0.10 0.60 11.27 -16.84 -0.19 0.41 16 6 C -0.10 -0.96 6.99 -83.55 -0.58 -1.55 16 7 C 0.61 6.34 7.82 -12.48 -0.10 6.24 16 8 O -0.54 -6.78 16.86 5.28 0.09 -6.69 16 9 N -0.71 -6.57 5.55 -61.35 -0.34 -6.91 16 10 C 0.11 0.99 5.79 -4.04 -0.02 0.97 16 11 C 0.11 1.20 5.79 -4.04 -0.02 1.18 16 12 N -0.74 -9.41 5.56 -60.29 -0.33 -9.74 16 13 C 0.53 9.79 7.85 -10.98 -0.09 9.70 16 14 O -0.51 -11.58 15.86 5.56 0.09 -11.49 16 15 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 21 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 N -0.20 -2.13 12.04 32.85 0.40 -1.73 16 26 N -0.05 -0.52 13.63 60.35 0.82 0.30 16 27 H 0.11 0.19 8.06 -52.49 -0.42 -0.24 16 28 H 0.10 0.12 7.84 -52.48 -0.41 -0.29 16 29 H 0.12 0.40 8.06 -52.49 -0.42 -0.02 16 30 H 0.10 0.11 7.79 -51.93 -0.40 -0.29 16 31 H 0.12 -0.09 8.08 -51.93 -0.42 -0.51 16 32 H 0.21 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.41 3.47 8.16 -40.82 -0.33 3.14 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -38.65 385.01 -6.03 -44.68 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.26 Total: 0.46 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.56 Total: 0.66 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 1.05 Total: -45.99 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.18 Total: -18.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.65 -6.03 -44.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282918942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.694 kcal (2) G-P(sol) polarization free energy of solvation -38.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds