Wall clock time and date at job start Tue Mar 31 2020 22:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99902 * 2 1 4 4 N 1.46507 * 109.46908 * 125.00260 * 3 2 1 5 5 C 1.34807 * 126.59526 * 124.71179 * 4 3 2 6 6 C 1.36596 * 106.84342 * 180.25973 * 5 4 3 7 7 C 1.47517 * 125.77404 * 180.02562 * 6 5 4 8 8 O 1.21595 * 120.00200 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00000 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00142 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47170 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47182 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00151 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.50708 * 119.99824 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.46813 * 180.02562 * 15 13 12 17 17 C 1.76197 * 99.99888 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00021 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00158 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99703 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00120 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47434 * 90.00068 * 21 19 17 23 23 H 1.48508 * 109.47121 * 210.00277 * 21 19 17 24 24 H 1.48501 * 109.47039 * 329.99832 * 21 19 17 25 25 N 1.34405 * 108.45326 * 0.02562 * 6 5 4 26 26 N 1.28755 * 109.52720 * 359.97438 * 25 6 5 27 27 H 1.07998 * 119.99766 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99963 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00150 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47183 * 5.00173 * 3 2 1 31 31 H 1.08998 * 109.46998 * 244.99931 * 3 2 1 32 32 H 1.08000 * 126.58208 * 0.26637 * 5 4 3 33 33 H 0.97002 * 120.00298 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.46798 * 299.99516 * 10 9 7 35 35 H 1.08998 * 109.46709 * 59.99894 * 10 9 7 36 36 H 1.09003 * 109.47479 * 299.99729 * 11 10 9 37 37 H 1.09001 * 109.46980 * 59.99961 * 11 10 9 38 38 H 0.97007 * 120.00046 * 0.02562 * 12 11 10 39 39 H 1.08990 * 109.47457 * 300.00500 * 15 13 12 40 40 H 1.08998 * 109.46512 * 60.00790 * 15 13 12 41 41 H 0.96994 * 119.99389 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3238 1.5443 1.0735 6 6 4.7915 1.4776 2.3552 7 6 6.1963 1.6508 2.7707 8 8 7.0535 1.8741 1.9377 9 7 6.5298 1.5604 4.0734 10 6 7.9249 1.7329 4.4861 11 6 8.0295 1.5838 6.0052 12 7 9.4246 1.7557 6.4178 13 6 9.7579 1.6662 7.7206 14 8 8.9030 1.4429 8.5513 15 6 11.1932 1.8425 8.1450 16 16 11.3170 1.6663 9.9421 17 6 13.0486 1.9123 10.1551 18 1 13.6764 2.1035 9.2975 19 6 13.6058 1.8612 11.4254 20 7 12.8405 1.6286 12.4709 21 14 15.4417 2.1213 11.6512 22 1 15.7151 3.5659 11.8598 23 1 15.9088 1.3533 12.8333 24 1 16.1609 1.6513 10.4399 25 7 3.7552 1.2275 3.1737 26 7 2.6731 1.1350 2.4822 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 4.9076 1.7315 0.1844 33 1 5.8460 1.3818 4.7378 34 1 8.5429 0.9761 4.0030 35 1 8.2701 2.7247 4.1941 36 1 7.4115 2.3408 6.4881 37 1 7.6840 0.5922 6.2975 38 1 10.1084 1.9347 5.7534 39 1 11.8105 1.0848 7.6626 40 1 11.5395 2.8337 7.8521 41 1 13.2300 1.5925 13.3585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282918942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:48 Heat of formation + Delta-G solvation = 14.829916 kcal Electronic energy + Delta-G solvation = -24286.920010 eV Core-core repulsion = 20329.865825 eV Total energy + Delta-G solvation = -3957.054185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.24963 -40.79190 -40.32575 -36.98179 -36.93094 -35.06460 -34.56575 -33.76969 -32.22394 -31.43131 -29.28629 -27.98821 -27.61648 -25.03876 -23.57334 -23.19169 -22.07086 -21.55028 -20.91546 -19.87818 -19.28006 -17.93031 -17.46643 -17.26618 -16.95388 -16.89212 -16.86243 -16.78971 -16.15226 -16.13429 -15.72926 -15.50184 -15.16345 -14.97727 -14.68108 -14.51483 -14.37907 -13.66563 -13.51345 -13.14802 -13.08009 -12.90830 -12.89460 -12.82155 -12.58950 -12.52302 -12.30812 -11.72102 -11.42342 -11.38795 -11.12638 -10.99764 -10.60315 -10.43147 -10.25658 -10.20957 -10.09131 -8.64799 -8.33162 -6.10994 0.13568 0.57943 0.77532 1.25987 1.43921 1.45643 1.55455 1.59575 1.60700 1.87134 2.18861 2.28899 2.52187 3.01265 3.16308 3.34116 3.42136 3.60618 3.79124 3.83302 3.95195 4.02102 4.02482 4.11464 4.33811 4.38952 4.45352 4.53469 4.54717 4.68977 4.82732 4.87696 4.93309 5.20122 5.38246 5.39012 5.43894 5.56273 5.65926 6.21613 6.29235 6.47491 6.86060 7.04862 7.08432 7.22313 8.76119 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.046401 B = 0.001348 C = 0.001317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.296851 B =20767.733906 C =21259.407566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.198 4.198 3 C 0.142 3.858 4 N -0.347 5.347 5 C 0.113 3.887 6 C -0.129 4.129 7 C 0.611 3.389 8 O -0.563 6.563 9 N -0.709 5.709 10 C 0.121 3.879 11 C 0.114 3.886 12 N -0.710 5.710 13 C 0.536 3.464 14 O -0.563 6.563 15 C -0.130 4.130 16 S -0.152 6.152 17 C -0.547 4.547 18 H 0.084 0.916 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.258 1.258 25 N -0.228 5.228 26 N -0.086 5.086 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.240 0.760 33 H 0.416 0.584 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.420 0.580 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.413 0.110 -33.910 40.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.217 4.217 3 C 0.024 3.976 4 N -0.131 5.131 5 C -0.045 4.045 6 C -0.269 4.269 7 C 0.396 3.604 8 O -0.441 6.441 9 N -0.360 5.360 10 C -0.003 4.003 11 C -0.011 4.011 12 N -0.365 5.365 13 C 0.322 3.678 14 O -0.441 6.441 15 C -0.281 4.281 16 S 0.075 5.925 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.182 1.182 25 N -0.101 5.101 26 N -0.066 5.066 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.169 0.831 32 H 0.257 0.743 33 H 0.252 0.748 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.257 0.743 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.404 -0.401 -31.992 39.641 hybrid contribution 2.402 0.365 -0.920 2.598 sum -21.002 -0.036 -32.913 39.043 Atomic orbital electron populations 1.24210 0.95458 1.03723 0.94799 1.22876 0.96696 0.97392 1.04701 1.21607 0.92249 0.98367 0.85391 1.50873 1.07139 1.46211 1.08880 1.23937 0.84676 0.95176 1.00691 1.21452 0.94663 1.18924 0.91868 1.16795 0.85346 0.75926 0.82348 1.90808 1.50094 1.51046 1.52122 1.45546 1.10547 1.71949 1.07979 1.21382 0.82525 1.03808 0.92535 1.21361 0.83035 1.02741 0.93936 1.45470 1.10297 1.73642 1.07068 1.20045 0.89718 0.75477 0.82565 1.90705 1.51903 1.48853 1.52667 1.23373 0.96336 1.06920 1.01484 1.85587 1.11900 1.94166 1.00864 1.23221 0.93017 1.56556 0.96655 0.89814 1.26115 1.04629 0.93914 0.94396 1.70187 1.38060 1.47095 0.99498 0.84961 0.76160 0.78594 0.78313 1.19327 1.20367 1.18157 1.74640 0.96917 1.10556 1.27991 1.81972 1.16775 1.22757 0.85124 0.87095 0.86644 0.87332 0.86419 0.83128 0.74340 0.74788 0.89613 0.89594 0.91139 0.91169 0.74267 0.86943 0.86917 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.47 14.32 67.78 0.97 0.50 16 2 C -0.20 -0.88 9.72 25.65 0.25 -0.64 16 3 C 0.14 0.27 6.98 85.63 0.60 0.87 16 4 N -0.35 -3.61 3.68 -350.82 -1.29 -4.90 16 5 C 0.11 1.20 11.27 83.85 0.95 2.14 16 6 C -0.13 -2.28 6.99 40.81 0.29 -1.99 16 7 C 0.61 12.11 7.82 86.69 0.68 12.79 16 8 O -0.56 -13.36 16.86 -4.02 -0.07 -13.43 16 9 N -0.71 -12.48 5.55 -466.28 -2.59 -15.07 16 10 C 0.12 1.98 5.79 86.38 0.50 2.48 16 11 C 0.11 2.35 5.79 86.38 0.50 2.85 16 12 N -0.71 -16.79 5.56 -463.06 -2.57 -19.36 16 13 C 0.54 19.26 7.85 87.66 0.69 19.94 16 14 O -0.56 -25.73 15.86 -3.02 -0.05 -25.78 16 15 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 16 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16 17 C -0.55 -31.16 9.50 67.96 0.65 -30.52 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.81 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.18 13.22 21.65 0.29 -55.90 16 21 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 N -0.23 -4.72 12.04 -50.00 -0.60 -5.32 16 26 N -0.09 -1.61 13.63 37.02 0.50 -1.11 16 27 H 0.11 0.29 8.06 -2.91 -0.02 0.27 16 28 H 0.12 0.08 7.84 -2.91 -0.02 0.06 16 29 H 0.11 0.68 8.06 -2.91 -0.02 0.65 16 30 H 0.12 -0.06 7.79 -2.39 -0.02 -0.08 16 31 H 0.15 -0.78 8.08 -2.39 -0.02 -0.80 16 32 H 0.24 0.64 8.06 -2.91 -0.02 0.62 16 33 H 0.42 6.89 8.16 -92.71 -0.76 6.13 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.42 6.93 8.47 -92.70 -0.79 6.15 16 39 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 40 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -86.71 385.01 0.99 -85.73 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -0.46 Total: 14.02 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 6.96 Total: 5.09 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -6.26 Total: -101.66 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.12 Total: -39.21 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -86.71 0.99 -85.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282918942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.556 kcal (2) G-P(sol) polarization free energy of solvation -86.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds