Wall clock time and date at job start Tue Mar 31 2020 22:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 119.99574 * 2 1 4 4 H 1.48505 * 109.46793 * 269.99598 * 3 2 1 5 5 H 1.48497 * 109.47333 * 29.99540 * 3 2 1 6 6 H 1.48500 * 109.47365 * 150.00060 * 3 2 1 7 7 C 1.38799 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00148 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00086 * 180.02562 * 7 2 1 10 10 C 1.80993 * 100.00066 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47306 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99763 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00124 * 179.97438 * 11 10 9 14 14 C 1.47428 * 125.64741 * 359.97438 * 13 11 10 15 15 C 1.54906 * 104.82911 * 155.90597 * 14 13 11 16 16 C 1.55159 * 101.58561 * 37.01007 * 15 14 13 17 17 H 1.08996 * 110.71992 * 83.03474 * 16 15 14 18 18 N 1.46497 * 110.71947 * 206.13524 * 16 15 14 19 19 C 1.34777 * 119.99525 * 204.99470 * 18 16 15 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 C 1.50703 * 109.47148 * 180.28037 * 21 19 18 23 23 N 1.33245 * 125.52264 * 269.69112 * 22 21 19 24 24 C 1.30830 * 109.82694 * 179.85388 * 23 22 21 25 25 N 1.34434 * 108.07654 * 0.40423 * 24 23 22 26 26 H 0.96997 * 126.82356 * 179.78955 * 25 24 23 27 27 N 1.30714 * 125.53133 * 89.99669 * 22 21 19 28 28 C 1.47014 * 125.64702 * 180.02562 * 13 11 10 29 29 H 0.96994 * 120.00442 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47187 * 59.99722 * 10 9 7 31 31 H 1.09000 * 109.47262 * 299.99743 * 10 9 7 32 32 H 1.08998 * 110.36621 * 37.06621 * 14 13 11 33 33 H 1.08999 * 110.36673 * 274.74335 * 14 13 11 34 34 H 1.09000 * 111.00499 * 278.93546 * 15 14 13 35 35 H 1.08997 * 111.03429 * 155.09758 * 15 14 13 36 36 H 0.97000 * 120.00580 * 25.00216 * 18 16 15 37 37 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 38 38 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 39 39 H 1.07996 * 125.96008 * 180.19457 * 24 23 22 40 40 H 1.08999 * 109.88734 * 61.60498 * 28 13 11 41 41 H 1.09007 * 109.88163 * 300.44010 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 1.4705 -2.1373 0.0014 9 16 3.7724 -1.2019 0.0012 10 6 4.0869 -2.9843 0.0025 11 6 5.5734 -3.2322 0.0026 12 8 6.3442 -2.2959 0.0024 13 7 6.0461 -4.4943 0.0041 14 6 5.2255 -5.7191 0.0062 15 6 6.1402 -6.8102 -0.6042 16 6 7.5236 -6.4197 -0.0200 17 1 7.6440 -6.8199 0.9867 18 7 8.6046 -6.8837 -0.8930 19 6 9.8311 -7.1123 -0.3834 20 8 10.0399 -6.9344 0.7980 21 6 10.9416 -7.5956 -1.2803 22 6 12.1986 -7.7786 -0.4694 23 7 13.1288 -6.8473 -0.2624 24 6 14.0850 -7.3339 0.4863 25 7 13.7827 -8.6126 0.7703 26 1 14.3073 -9.2292 1.3046 27 7 12.5560 -8.8782 0.1403 28 6 7.4654 -4.8777 0.0049 29 1 -0.4850 0.8400 -0.0004 30 1 3.6442 -3.4320 -0.8873 31 1 3.6437 -3.4308 0.8927 32 1 4.3367 -5.5813 -0.6094 33 1 4.9447 -5.9859 1.0250 34 1 6.1452 -6.7518 -1.6926 35 1 5.8412 -7.8035 -0.2696 36 1 8.4377 -7.0263 -1.8379 37 1 10.6576 -8.5472 -1.7298 38 1 11.1197 -6.8614 -2.0659 39 1 14.9655 -6.8022 0.8156 40 1 7.9502 -4.5028 0.9063 41 1 7.9589 -4.4738 -0.8792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283329874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:11 Heat of formation + Delta-G solvation = -9.735100 kcal Electronic energy + Delta-G solvation = -25548.773355 eV Core-core repulsion = 21590.653952 eV Total energy + Delta-G solvation = -3958.119404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.07657 -41.40313 -40.46188 -38.50207 -35.40529 -34.67119 -34.33005 -32.78808 -32.25588 -30.93908 -30.25533 -28.67144 -27.82712 -24.75637 -23.80021 -22.80729 -21.95380 -21.06162 -20.74061 -19.65854 -19.27614 -18.35921 -18.24104 -17.66218 -17.15090 -16.83099 -16.65083 -16.40430 -16.16597 -15.83560 -15.65830 -15.29937 -14.91046 -14.71559 -14.54556 -14.38247 -14.05809 -13.73010 -13.40888 -13.34288 -13.17940 -13.05469 -13.01713 -12.87591 -12.69269 -12.66084 -11.89358 -11.84366 -11.31430 -11.17068 -11.10833 -11.08367 -10.99611 -10.63508 -10.53646 -10.25393 -9.79198 -9.01405 -8.51485 -6.22778 0.63586 0.94355 1.30933 1.41639 1.48085 1.50451 1.56433 1.67221 1.84811 1.98919 2.24903 2.37114 2.68258 2.86735 3.17045 3.34997 3.46067 3.67194 3.78284 3.87407 4.02494 4.14968 4.18328 4.18846 4.31814 4.40179 4.46430 4.58372 4.62606 4.73926 4.76086 4.97120 5.06477 5.22541 5.25184 5.36150 5.42200 5.71080 6.11558 6.24934 6.29360 6.48511 6.93837 7.01379 7.09415 7.19270 8.60628 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029252 B = 0.001837 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.979991 B =15236.540874 C =15931.955733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.048 3.952 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.240 1.240 7 C -0.527 4.527 8 H 0.065 0.935 9 S -0.180 6.180 10 C -0.100 4.100 11 C 0.545 3.455 12 O -0.567 6.567 13 N -0.614 5.614 14 C 0.086 3.914 15 C -0.118 4.118 16 C 0.145 3.855 17 H 0.097 0.903 18 N -0.702 5.702 19 C 0.523 3.477 20 O -0.579 6.579 21 C -0.045 4.045 22 C 0.228 3.772 23 N -0.578 5.578 24 C 0.273 3.727 25 N -0.475 5.475 26 H 0.457 0.543 27 N -0.337 5.337 28 C 0.098 3.902 29 H 0.277 0.723 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.424 0.576 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.268 0.732 40 H 0.044 0.956 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.833 -24.984 -3.995 36.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.164 1.164 7 C -0.674 4.674 8 H 0.084 0.916 9 S 0.046 5.954 10 C -0.250 4.250 11 C 0.333 3.667 12 O -0.446 6.446 13 N -0.349 5.349 14 C -0.036 4.036 15 C -0.156 4.156 16 C 0.039 3.961 17 H 0.115 0.885 18 N -0.355 5.355 19 C 0.309 3.691 20 O -0.457 6.457 21 C -0.087 4.087 22 C -0.055 4.055 23 N -0.307 5.307 24 C -0.026 4.026 25 N -0.195 5.195 26 H 0.306 0.694 27 N -0.168 5.168 28 C -0.027 4.027 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.142 0.858 36 H 0.263 0.737 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.284 0.716 40 H 0.062 0.938 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 26.469 -23.650 -3.330 35.651 hybrid contribution -0.534 -0.273 0.385 0.713 sum 25.935 -23.923 -2.945 35.406 Atomic orbital electron populations 1.70003 1.07161 1.28999 1.49070 1.25511 0.95250 1.02088 0.92915 0.85906 0.80618 0.79845 0.80248 1.18592 1.18278 1.16416 1.22426 0.89910 0.96804 1.58292 0.91636 1.84806 1.06831 1.06151 1.97589 1.23193 0.94891 0.99529 1.07421 1.19781 0.89687 0.81687 0.75499 1.90694 1.59609 1.43233 1.51023 1.48329 1.08149 1.05229 1.73171 1.22753 0.95439 0.82262 1.03099 1.23098 0.90293 0.99643 1.02584 1.21783 0.87895 0.90174 0.96289 0.88524 1.45665 1.08663 1.67622 1.13550 1.20741 0.83945 0.76161 0.88236 1.90748 1.82891 1.53084 1.19013 1.20038 0.85133 1.07315 0.96233 1.23793 0.97002 0.87131 0.97568 1.70371 1.04679 1.33518 1.22166 1.26964 0.99471 0.83766 0.92360 1.48033 1.17163 1.12902 1.41394 0.69391 1.77839 0.98670 1.24241 1.16028 1.22339 0.81957 0.96929 1.01433 0.91347 0.86450 0.86976 0.88391 0.89567 0.87633 0.85848 0.73659 0.83109 0.83657 0.71609 0.93776 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.49 13.97 21.65 0.30 -55.19 16 2 C 0.05 2.82 5.50 84.86 0.47 3.29 16 3 Si 0.91 45.37 27.74 68.60 1.90 47.28 16 4 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.24 -12.07 6.74 99.48 0.67 -11.40 16 7 C -0.53 -30.68 10.04 67.95 0.68 -30.00 16 8 H 0.07 3.98 8.03 -2.91 -0.02 3.96 16 9 S -0.18 -9.29 18.55 -56.49 -1.05 -10.34 16 10 C -0.10 -3.84 5.16 71.24 0.37 -3.47 16 11 C 0.55 20.20 7.87 87.66 0.69 20.89 16 12 O -0.57 -26.28 16.19 -3.02 -0.05 -26.33 16 13 N -0.61 -16.22 3.33 -811.79 -2.70 -18.92 16 14 C 0.09 1.37 6.69 86.85 0.58 1.95 16 15 C -0.12 -1.04 6.71 31.99 0.21 -0.82 16 16 C 0.15 2.23 3.32 46.18 0.15 2.38 16 17 H 0.10 1.81 7.55 -2.39 -0.02 1.79 16 18 N -0.70 -8.08 5.10 -436.91 -2.23 -10.31 16 19 C 0.52 9.29 7.82 87.66 0.69 9.98 16 20 O -0.58 -16.67 15.68 -3.04 -0.05 -16.72 16 21 C -0.05 -0.54 6.33 29.10 0.18 -0.36 16 22 C 0.23 4.42 6.63 138.63 0.92 5.34 16 23 N -0.58 -11.41 11.19 -191.80 -2.15 -13.56 16 24 C 0.27 3.04 13.13 180.36 2.37 5.41 16 25 N -0.48 -5.41 7.45 -60.49 -0.45 -5.86 16 26 H 0.46 1.55 8.96 -213.11 -1.91 -0.36 16 27 N -0.34 -6.48 12.80 -51.33 -0.66 -7.13 16 28 C 0.10 2.38 6.62 86.73 0.57 2.96 16 29 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.12 4.03 7.85 -2.39 -0.02 4.01 16 31 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 32 H 0.10 1.40 7.48 -2.39 -0.02 1.39 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 0.58 8.01 -2.39 -0.02 0.56 16 35 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.42 1.58 8.56 -92.71 -0.79 0.78 16 37 H 0.15 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.27 -0.07 8.06 -2.91 -0.02 -0.10 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.69 8.03 -2.38 -0.02 1.67 16 Total: -1.00 -96.07 368.44 -0.88 -96.95 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -1.65 Total: 2.59 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 7.89 Total: 17.54 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -7.88 Total: -110.97 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.10 Total: -43.05 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.28 kcal Atomic # 16 Polarization: -9.29 SS G_CDS: -1.05 Total: -10.34 kcal Total: -96.07 -0.88 -96.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283329874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.213 kcal (2) G-P(sol) polarization free energy of solvation -96.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds