Wall clock time and date at job start Tue Mar 31 2020 22:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99994 * 2 1 4 4 H 1.48502 * 109.47342 * 239.99759 * 3 2 1 5 5 H 1.48496 * 109.47239 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47324 * 119.99912 * 3 2 1 7 7 C 1.38797 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00203 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47207 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99874 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00228 * 180.02562 * 11 10 9 14 14 C 1.48213 * 119.97572 * 179.97438 * 13 11 10 15 15 C 1.47141 * 110.34476 * 102.48069 * 14 13 11 16 16 C 1.53798 * 111.83676 * 58.30410 * 15 14 13 17 17 N 1.43467 * 107.96011 * 281.66861 * 16 15 14 18 18 C 1.34773 * 118.94223 * 273.62630 * 17 16 15 19 19 O 1.21627 * 119.99800 * 179.63843 * 18 17 16 20 20 C 1.47230 * 119.99920 * 359.64582 * 18 17 16 21 21 C 1.37017 * 127.18645 * 191.72554 * 20 18 17 22 22 N 1.33316 * 106.36649 * 179.97438 * 21 20 18 23 23 N 1.28511 * 109.44621 * 0.02562 * 22 21 20 24 24 N 1.28717 * 110.63717 * 359.75052 * 23 22 21 25 25 H 0.96994 * 126.04020 * 180.26575 * 24 23 22 26 26 C 1.48872 * 122.15515 * 93.54592 * 17 16 15 27 27 C 1.43624 * 119.97448 * 359.97438 * 13 11 10 28 28 H 0.96995 * 120.00313 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47172 * 59.99744 * 10 9 7 30 30 H 1.09004 * 109.46991 * 299.99715 * 10 9 7 31 31 H 1.08993 * 109.33149 * 222.75359 * 14 13 11 32 32 H 1.09007 * 109.32487 * 342.22120 * 14 13 11 33 33 H 1.09004 * 109.00811 * 178.90421 * 15 14 13 34 34 H 1.09000 * 109.01326 * 297.69569 * 15 14 13 35 35 H 1.09000 * 109.76646 * 41.28685 * 16 15 14 36 36 H 1.09004 * 109.76578 * 162.05804 * 16 15 14 37 37 H 1.07993 * 126.81166 * 359.97438 * 21 20 18 38 38 H 1.08992 * 109.53434 * 200.74618 * 26 17 16 39 39 H 1.08998 * 109.39657 * 80.72757 * 26 17 16 40 40 H 1.08997 * 108.87064 * 31.44965 * 27 13 11 41 41 H 1.09000 * 108.87373 * 149.98675 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3430 0.0003 14 6 2.3238 -7.7308 0.0003 15 6 2.4239 -8.3146 -1.3467 16 6 3.8730 -8.3192 -1.8620 17 7 4.1863 -6.9939 -2.3130 18 6 3.8760 -6.6448 -3.5772 19 8 4.1270 -5.5240 -3.9776 20 6 3.2330 -7.6199 -4.4735 21 6 3.0562 -7.5091 -5.8276 22 7 2.4323 -8.6210 -6.2173 23 7 2.2280 -9.3765 -5.1980 24 7 2.6907 -8.8302 -4.1283 25 1 2.6597 -9.2077 -3.2354 26 6 4.8416 -5.9905 -1.4297 27 6 4.2607 -6.1061 0.0008 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1244 -3.7313 -0.8895 31 1 2.9040 -8.3337 0.6987 32 1 1.2799 -7.7247 0.3140 33 1 2.0542 -9.3397 -1.3177 34 1 1.8053 -7.7349 -2.0318 35 1 4.5498 -8.6041 -1.0564 36 1 3.9676 -9.0222 -2.6897 37 1 3.3617 -6.6847 -6.4548 38 1 4.6574 -4.9885 -1.8170 39 1 5.9150 -6.1783 -1.4026 40 1 4.4631 -5.1800 0.5389 41 1 4.7557 -6.9287 0.5170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283401880.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:56 Heat of formation + Delta-G solvation = 39.324058 kcal Electronic energy + Delta-G solvation = -27881.481683 eV Core-core repulsion = 23925.489644 eV Total energy + Delta-G solvation = -3955.992039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.67266 -41.81086 -40.52583 -38.50518 -36.33048 -34.86316 -34.60640 -34.14684 -32.61896 -30.88911 -29.72246 -27.81997 -27.44073 -25.83187 -24.41670 -23.85227 -23.19648 -21.56763 -20.55415 -19.56899 -19.25171 -18.45518 -18.22508 -17.67707 -17.48384 -17.01505 -16.89577 -16.67490 -16.25803 -15.95738 -15.65300 -15.43022 -14.94989 -14.75378 -14.57458 -14.42333 -14.04537 -13.91766 -13.54660 -13.43066 -13.19824 -13.02539 -12.91040 -12.84883 -12.64133 -12.38962 -12.27432 -12.09523 -11.82855 -11.74192 -11.41969 -11.14751 -10.94037 -10.74923 -10.31540 -10.06699 -9.71285 -8.70152 -8.36635 -6.15305 -0.30741 1.06851 1.22204 1.25672 1.42151 1.42896 1.50497 1.54254 1.69529 1.82127 2.10649 2.25588 2.97589 2.98048 3.23513 3.36623 3.45194 3.59751 3.68649 3.77281 3.87005 3.92739 3.95714 4.09548 4.19753 4.34782 4.40033 4.42647 4.44036 4.62006 4.74589 4.80626 4.83648 4.87485 4.99200 5.22598 5.38919 5.48846 5.55971 5.98249 6.17051 6.24099 6.72501 7.04532 7.05862 7.09743 8.72479 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.003290 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.435686 B = 8507.870171 C = 9176.099078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.156 6.156 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.564 6.564 13 N -0.597 5.597 14 C 0.117 3.883 15 C -0.185 4.185 16 C 0.084 3.916 17 N -0.590 5.590 18 C 0.584 3.416 19 O -0.551 6.551 20 C -0.066 4.066 21 C 0.024 3.976 22 N -0.292 5.292 23 N -0.060 5.060 24 N -0.358 5.358 25 H 0.466 0.534 26 C 0.091 3.909 27 C 0.089 3.911 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.035 0.965 35 H 0.150 0.850 36 H 0.091 0.909 37 H 0.215 0.785 38 H 0.063 0.937 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.293 -23.271 -0.071 28.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.071 5.929 10 C -0.276 4.276 11 C 0.319 3.681 12 O -0.442 6.442 13 N -0.330 5.330 14 C -0.004 4.004 15 C -0.224 4.224 16 C -0.039 4.039 17 N -0.322 5.322 18 C 0.370 3.630 19 O -0.428 6.428 20 C -0.200 4.200 21 C -0.136 4.136 22 N -0.157 5.157 23 N -0.042 5.042 24 N -0.098 5.098 25 H 0.326 0.674 26 C -0.030 4.030 27 C -0.035 4.035 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.112 0.888 31 H 0.148 0.852 32 H 0.087 0.913 33 H 0.152 0.848 34 H 0.054 0.946 35 H 0.168 0.832 36 H 0.108 0.892 37 H 0.231 0.769 38 H 0.082 0.918 39 H 0.142 0.858 40 H 0.114 0.886 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.820 -24.094 -0.895 27.790 hybrid contribution 1.522 2.330 0.588 2.845 sum 15.342 -21.764 -0.307 26.630 Atomic orbital electron populations 1.70172 1.08004 1.28683 1.47947 1.26127 0.95958 1.03334 0.93657 0.85023 0.77864 0.75681 0.79569 1.18929 1.20350 1.18204 1.23142 0.95254 0.91919 1.59021 0.89978 1.85557 1.10792 0.99497 1.97012 1.23387 1.03333 0.94942 1.05911 1.20148 0.86208 0.86817 0.74884 1.90680 1.17444 1.85836 1.50263 1.47571 1.06633 1.05739 1.73102 1.20807 1.01903 0.80167 0.97479 1.21999 0.97354 1.04314 0.98764 1.22052 0.96956 0.82315 1.02618 1.47684 1.59397 1.14687 1.10389 1.17132 0.78224 0.85391 0.82290 1.90894 1.55045 1.21086 1.75737 1.22247 1.10034 0.90770 0.96978 1.24252 0.98567 0.98401 0.92331 1.74980 1.15955 1.03407 1.21328 1.78108 1.15613 1.21207 0.89287 1.46933 1.37347 1.12744 1.12780 0.67370 1.23145 0.98596 0.91856 0.89442 1.21997 0.79537 1.06471 0.95473 0.91994 0.86899 0.88754 0.85240 0.91262 0.84807 0.94586 0.83240 0.89172 0.76879 0.91791 0.85798 0.88646 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.83 13.22 21.65 0.29 -56.54 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 44.13 29.55 68.60 2.03 46.15 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.55 -31.59 9.50 67.95 0.65 -30.94 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 10 C -0.12 -4.94 4.71 71.24 0.34 -4.60 16 11 C 0.53 18.76 7.69 87.66 0.67 19.43 16 12 O -0.56 -25.44 15.30 -3.04 -0.05 -25.49 16 13 N -0.60 -12.17 2.45 -831.30 -2.04 -14.21 16 14 C 0.12 1.54 5.70 84.23 0.48 2.02 16 15 C -0.19 -1.74 4.00 29.04 0.12 -1.63 16 16 C 0.08 0.47 4.93 87.21 0.43 0.90 16 17 N -0.59 -8.85 2.51 -822.03 -2.06 -10.91 16 18 C 0.58 13.79 7.38 86.61 0.64 14.43 16 19 O -0.55 -18.03 16.32 -4.12 -0.07 -18.10 16 20 C -0.07 -1.40 6.45 40.41 0.26 -1.14 16 21 C 0.02 0.56 11.89 84.18 1.00 1.56 16 22 N -0.29 -7.33 12.35 -57.50 -0.71 -8.04 16 23 N -0.06 -1.31 13.35 37.02 0.49 -0.82 16 24 N -0.36 -5.86 5.49 -48.52 -0.27 -6.13 16 25 H 0.47 4.21 3.77 -219.90 -0.83 3.38 16 26 C 0.09 1.28 6.67 86.54 0.58 1.86 16 27 C 0.09 1.04 5.05 87.54 0.44 1.48 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.11 3.89 7.37 -2.40 -0.02 3.87 16 30 H 0.09 3.64 7.30 -2.39 -0.02 3.62 16 31 H 0.13 0.43 8.05 -2.39 -0.02 0.41 16 32 H 0.07 1.40 7.12 -2.38 -0.02 1.38 16 33 H 0.13 0.18 7.86 -2.39 -0.02 0.16 16 34 H 0.04 0.68 7.25 -2.39 -0.02 0.67 16 35 H 0.15 -0.39 7.58 -2.39 -0.02 -0.41 16 36 H 0.09 0.33 4.84 -2.38 -0.01 0.32 16 37 H 0.21 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.06 1.46 6.33 -2.39 -0.02 1.44 16 39 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.10 1.24 6.38 -2.39 -0.02 1.23 16 41 H 0.14 0.21 7.72 -2.39 -0.02 0.19 16 Total: -1.00 -93.30 345.78 2.79 -90.51 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.27 Total: 8.87 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 6.07 Total: 4.64 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -4.30 Total: -96.64 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -0.11 Total: -43.59 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -93.30 2.79 -90.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283401880.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.833 kcal (2) G-P(sol) polarization free energy of solvation -93.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds