Wall clock time and date at job start Tue Mar 31 2020 22:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00133 * 2 1 4 4 H 1.48498 * 109.47352 * 269.99911 * 3 2 1 5 5 H 1.48501 * 109.47246 * 29.99729 * 3 2 1 6 6 H 1.48505 * 109.47142 * 149.99810 * 3 2 1 7 7 C 1.38797 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00533 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00071 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46862 * 180.02562 * 10 9 7 12 12 O 1.21270 * 120.00311 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99606 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.62796 * 359.97438 * 13 11 10 15 15 C 1.53197 * 108.77007 * 126.44135 * 14 13 11 16 16 C 1.53035 * 109.31816 * 54.62916 * 15 14 13 17 17 C 1.53035 * 109.53843 * 298.63661 * 16 15 14 18 18 H 1.09000 * 109.49961 * 301.38054 * 17 16 15 19 19 N 1.46505 * 109.49635 * 181.31357 * 17 16 15 20 20 C 1.34777 * 119.99724 * 155.06778 * 19 17 16 21 21 O 1.21553 * 120.00290 * 359.97438 * 20 19 17 22 22 C 1.47876 * 119.99429 * 179.72339 * 20 19 17 23 23 N 1.34548 * 126.04885 * 359.96853 * 22 20 19 24 24 C 1.30871 * 107.26664 * 179.83292 * 23 22 20 25 25 N 1.34590 * 107.62698 * 0.41906 * 24 23 22 26 26 H 0.96998 * 125.75433 * 179.74938 * 25 24 23 27 27 N 1.28857 * 108.49853 * 359.73453 * 25 24 23 28 28 C 1.46933 * 120.60338 * 180.02562 * 13 11 10 29 29 H 0.97001 * 119.99408 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46662 * 60.00577 * 10 9 7 31 31 H 1.09002 * 109.47311 * 300.00270 * 10 9 7 32 32 H 1.08996 * 109.59241 * 6.64952 * 14 13 11 33 33 H 1.09002 * 109.58639 * 246.21590 * 14 13 11 34 34 H 1.09004 * 109.49464 * 294.67678 * 15 14 13 35 35 H 1.09003 * 109.52281 * 174.60471 * 15 14 13 36 36 H 1.08998 * 109.46086 * 178.61408 * 16 15 14 37 37 H 1.09006 * 109.44286 * 58.64921 * 16 15 14 38 38 H 0.97000 * 119.99792 * 335.06346 * 19 17 16 39 39 H 1.07996 * 126.19372 * 180.17341 * 24 23 22 40 40 H 1.08991 * 109.56347 * 113.76157 * 28 13 11 41 41 H 1.09000 * 109.61501 * 353.32647 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0021 13 7 2.8439 -6.3432 -0.0008 14 6 4.2958 -6.1173 -0.0003 15 6 4.9149 -6.8928 1.1669 16 6 4.5077 -8.3648 1.0694 17 6 2.9849 -8.4820 1.1654 18 1 2.6456 -8.0529 2.1082 19 7 2.5983 -9.8938 1.1034 20 6 1.4353 -10.2986 1.6512 21 8 0.7073 -9.4925 2.1969 22 6 1.0422 -11.7225 1.5833 23 7 1.7485 -12.7122 1.0071 24 6 1.0658 -13.8179 1.1624 25 7 -0.0643 -13.5095 1.8252 26 1 -0.7626 -14.1341 2.0762 27 7 -0.0620 -12.2445 2.0705 28 6 2.3432 -7.7245 -0.0019 29 1 -0.4849 0.8401 -0.0004 30 1 3.1243 -3.7314 0.8895 31 1 3.1244 -3.7314 -0.8905 32 1 4.5001 -5.0533 0.1186 33 1 4.7208 -6.4705 -0.9398 34 1 4.5574 -6.4781 2.1095 35 1 6.0010 -6.8120 1.1226 36 1 4.9670 -8.9234 1.8849 37 1 4.8439 -8.7718 0.1158 38 1 3.1793 -10.5370 0.6682 39 1 1.3548 -14.7996 0.8174 40 1 2.6088 -8.2082 -0.9418 41 1 1.2596 -7.7211 0.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283456579.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:17 Heat of formation + Delta-G solvation = -11.484820 kcal Electronic energy + Delta-G solvation = -26223.640052 eV Core-core repulsion = 22265.444775 eV Total energy + Delta-G solvation = -3958.195277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.49208 -41.49994 -40.49383 -38.45939 -35.92123 -34.59950 -34.57780 -33.30600 -32.51496 -31.85885 -30.06225 -27.69835 -26.25994 -26.09375 -23.89511 -23.69633 -22.17835 -21.59922 -20.47377 -19.94242 -19.47072 -18.36297 -18.08000 -17.47617 -17.38507 -17.04240 -16.87311 -16.61470 -16.07389 -15.80679 -15.68894 -15.26620 -15.20245 -14.89751 -14.49089 -14.34403 -14.21674 -13.72955 -13.47097 -13.22368 -13.16603 -12.88256 -12.71366 -12.61129 -12.12099 -11.98978 -11.77733 -11.71303 -11.68092 -11.62684 -11.50999 -11.13699 -10.94907 -10.87456 -10.49504 -10.25028 -9.63590 -8.68422 -8.33716 -6.13106 0.23963 1.11650 1.22341 1.38250 1.43598 1.48940 1.56242 1.58114 2.01157 2.18029 2.26779 2.29313 3.00246 3.04518 3.24985 3.55720 3.59689 3.72296 3.87474 3.95966 4.01358 4.07785 4.18795 4.26065 4.42544 4.54492 4.57732 4.72854 4.78148 4.85994 4.92308 5.03971 5.13809 5.15684 5.21848 5.39374 5.42116 5.54300 5.91429 6.20371 6.25156 6.31091 6.90678 7.04607 7.06803 7.12490 8.75751 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.002161 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.481936 B =12956.286344 C =13847.115709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.002 2.998 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.086 0.914 9 S -0.162 6.162 10 C -0.118 4.118 11 C 0.528 3.472 12 O -0.571 6.571 13 N -0.604 5.604 14 C 0.093 3.907 15 C -0.127 4.127 16 C -0.114 4.114 17 C 0.139 3.861 18 H 0.062 0.938 19 N -0.682 5.682 20 C 0.606 3.394 21 O -0.563 6.563 22 C 0.124 3.876 23 N -0.503 5.503 24 C 0.225 3.775 25 N -0.385 5.385 26 H 0.472 0.528 27 N -0.286 5.286 28 C 0.105 3.895 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.426 0.574 39 H 0.290 0.710 40 H 0.095 0.905 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.295 -33.036 0.547 36.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.824 3.176 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.690 4.690 8 H 0.104 0.896 9 S 0.065 5.935 10 C -0.269 4.269 11 C 0.316 3.684 12 O -0.449 6.449 13 N -0.339 5.339 14 C -0.028 4.028 15 C -0.165 4.165 16 C -0.152 4.152 17 C 0.034 3.966 18 H 0.080 0.920 19 N -0.336 5.336 20 C 0.389 3.611 21 O -0.438 6.438 22 C -0.156 4.156 23 N -0.230 5.230 24 C -0.072 4.072 25 N -0.110 5.110 26 H 0.323 0.677 27 N -0.128 5.128 28 C -0.019 4.019 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.265 0.735 39 H 0.305 0.695 40 H 0.113 0.887 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.817 -32.138 1.070 34.616 hybrid contribution 0.554 0.445 0.066 0.714 sum 13.372 -31.693 1.136 34.417 Atomic orbital electron populations 1.70211 1.08129 1.28582 1.48079 1.26206 0.95997 1.03532 0.93749 0.84900 0.78197 0.75688 0.78845 1.19169 1.20481 1.17889 1.23190 0.95392 0.91611 1.58787 0.89551 1.85746 1.11032 0.99670 1.97042 1.23342 1.03221 0.93657 1.06670 1.20319 0.85982 0.87010 0.75111 1.90696 1.17773 1.85831 1.50629 1.48045 1.07982 1.04471 1.73370 1.22243 0.76827 1.02649 1.01130 1.21920 1.03018 0.93916 0.97682 1.21807 0.89906 0.97926 1.05511 1.21325 0.97671 0.79709 0.97939 0.91982 1.45436 1.20544 1.10002 1.57582 1.16752 0.81860 0.84137 0.78352 1.90897 1.53125 1.54458 1.45358 1.23423 0.91912 0.96079 1.04188 1.71242 1.30981 0.98472 1.22354 1.27724 0.83596 1.01588 0.94259 1.45277 1.20341 1.05214 1.40144 0.67722 1.74319 1.22188 0.95051 1.21203 1.21907 0.99099 0.81336 0.99601 0.92056 0.87202 0.86807 0.88960 0.87960 0.92593 0.86061 0.88840 0.87878 0.73475 0.69496 0.88730 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.85 13.22 21.65 0.29 -57.56 16 2 C 0.01 0.56 5.49 84.86 0.47 1.02 16 3 Si 1.00 44.38 29.55 68.60 2.03 46.41 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.54 -31.67 9.50 67.95 0.65 -31.02 16 8 H 0.09 4.62 7.80 -2.91 -0.02 4.59 16 9 S -0.16 -9.48 20.57 -56.49 -1.16 -10.64 16 10 C -0.12 -4.96 4.50 71.24 0.32 -4.64 16 11 C 0.53 22.05 7.72 87.66 0.68 22.73 16 12 O -0.57 -30.28 15.27 -3.00 -0.05 -30.33 16 13 N -0.60 -17.82 2.97 -818.80 -2.43 -20.25 16 14 C 0.09 1.67 6.34 86.36 0.55 2.21 16 15 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16 16 C -0.11 -1.33 5.35 30.62 0.16 -1.17 16 17 C 0.14 3.07 2.60 45.08 0.12 3.19 16 18 H 0.06 1.84 7.58 -2.39 -0.02 1.83 16 19 N -0.68 -13.84 5.08 -444.93 -2.26 -16.10 16 20 C 0.61 17.32 7.80 86.80 0.68 18.00 16 21 O -0.56 -22.32 16.75 -3.88 -0.07 -22.38 16 22 C 0.12 2.88 7.96 137.13 1.09 3.97 16 23 N -0.50 -7.51 11.09 -193.03 -2.14 -9.65 16 24 C 0.23 1.16 13.14 180.30 2.37 3.53 16 25 N -0.38 -3.24 6.93 -60.38 -0.42 -3.66 16 26 H 0.47 -0.32 8.96 -219.79 -1.97 -2.29 16 27 N -0.29 -6.31 12.30 -52.44 -0.65 -6.96 16 28 C 0.10 2.93 6.01 86.38 0.52 3.45 16 29 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.11 4.16 7.69 -2.39 -0.02 4.14 16 31 H 0.11 4.21 7.94 -2.39 -0.02 4.19 16 32 H 0.09 1.72 5.93 -2.39 -0.01 1.70 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.43 5.77 8.31 -92.71 -0.77 5.00 16 39 H 0.29 -2.41 8.06 -2.91 -0.02 -2.43 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 1.90 7.01 -2.39 -0.02 1.89 16 Total: -1.00 -102.11 364.02 -0.72 -102.83 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -1.64 Total: 8.48 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 7.78 Total: 19.82 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -7.61 Total: -114.18 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.11 Total: -52.71 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -9.48 SS G_CDS: -1.16 Total: -10.64 kcal Total: -102.11 -0.72 -102.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283456579.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.342 kcal (2) G-P(sol) polarization free energy of solvation -102.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds