Wall clock time and date at job start Tue Mar 31 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.99834 * 2 1 4 4 C 1.54323 * 109.88368 * 121.09377 * 2 1 3 5 5 C 1.55153 * 103.10236 * 141.70038 * 4 2 1 6 6 H 1.09003 * 111.00505 * 82.48412 * 5 4 2 7 7 N 1.46898 * 111.00907 * 206.33611 * 5 4 2 8 8 C 1.46892 * 111.00450 * 205.00102 * 7 5 4 9 9 C 1.50705 * 109.47372 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99481 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99895 * 179.97438 * 9 8 7 12 12 C 1.37102 * 119.99651 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99964 * 359.97438 * 12 11 9 14 14 C 1.38948 * 119.99911 * 180.02562 * 12 11 9 15 15 N 1.31409 * 120.00313 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00073 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46707 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46696 * 120.00139 * 16 14 12 19 19 H 1.48496 * 109.47208 * 240.00532 * 16 14 12 20 20 C 1.54915 * 101.58175 * 324.40929 * 5 4 2 21 21 N 1.47428 * 104.83102 * 37.00975 * 20 5 4 22 22 C 1.34778 * 125.64860 * 155.91040 * 21 20 5 23 23 O 1.21619 * 120.00082 * 179.97438 * 22 21 20 24 24 C 1.47170 * 119.99754 * 359.97438 * 22 21 20 25 25 C 1.38246 * 128.47199 * 179.97438 * 24 22 21 26 26 N 1.31249 * 111.88694 * 180.02562 * 25 24 22 27 27 N 1.27336 * 120.03823 * 359.97438 * 26 25 24 28 28 S 1.56642 * 109.73737 * 359.69582 * 27 26 25 29 29 H 1.09004 * 109.47442 * 298.90270 * 1 2 3 30 30 H 1.08999 * 109.47429 * 58.90757 * 1 2 3 31 31 H 1.09004 * 109.47135 * 178.90269 * 1 2 3 32 32 H 1.09002 * 110.72057 * 23.24789 * 4 2 1 33 33 H 1.09003 * 110.71837 * 260.15363 * 4 2 1 34 34 H 1.00900 * 110.99675 * 81.03969 * 7 5 4 35 35 H 1.08999 * 109.47132 * 299.99484 * 8 7 5 36 36 H 1.09000 * 109.47378 * 59.99927 * 8 7 5 37 37 H 0.96992 * 120.00489 * 0.02562 * 11 9 8 38 38 H 0.97003 * 120.00732 * 180.02562 * 15 14 12 39 39 H 1.09000 * 110.36497 * 155.84404 * 20 5 4 40 40 H 1.08996 * 110.36659 * 278.05860 * 20 5 4 41 41 H 1.07999 * 124.05656 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2897 -1.5140 0.6969 6 1 4.1668 -0.8676 0.6652 7 7 3.5558 -2.7204 1.4916 8 6 4.9691 -3.1100 1.4003 9 6 5.2035 -4.3481 2.2268 10 8 4.2833 -4.8563 2.8321 11 7 6.4351 -4.8913 2.2927 12 6 6.6481 -6.0180 3.0442 13 1 5.8290 -6.4700 3.5838 14 6 7.9180 -6.5777 3.1126 15 7 8.9150 -6.0269 2.4572 16 14 8.2085 -8.1125 4.1372 17 1 6.9333 -8.5323 4.7720 18 1 8.7086 -9.2037 3.2630 19 1 9.2140 -7.8215 5.1904 20 6 2.8201 -1.8831 -0.7325 21 7 2.0352 -0.7197 -1.1841 22 6 1.8148 -0.3710 -2.4672 23 8 1.1484 0.6134 -2.7239 24 6 2.3807 -1.1815 -3.5575 25 6 2.2664 -0.9880 -4.9216 26 7 2.9036 -1.9119 -5.6019 27 7 3.5266 -2.8385 -4.9897 28 16 3.3822 -2.6403 -3.4426 29 1 -0.3634 0.4967 0.8997 30 1 -0.3634 0.5307 -0.8800 31 1 -0.3633 -1.0275 -0.0197 32 1 1.3051 -1.4459 1.6183 33 1 2.3499 -0.0459 2.0212 34 1 2.9526 -3.4789 1.2104 35 1 5.2234 -3.3137 0.3601 36 1 5.5944 -2.2996 1.7752 37 1 7.1708 -4.4851 1.8084 38 1 9.8015 -6.4178 2.5046 39 1 3.6788 -2.0380 -1.3857 40 1 2.1969 -2.7770 -0.7080 41 1 1.7179 -0.1746 -5.3732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283946805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:10 Heat of formation + Delta-G solvation = 16.620925 kcal Electronic energy + Delta-G solvation = -26548.837446 eV Core-core repulsion = 22591.860926 eV Total energy + Delta-G solvation = -3956.976521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18955 -40.58713 -38.59207 -37.87586 -35.02647 -33.89310 -33.12557 -31.70958 -31.33006 -30.23427 -27.91392 -26.51986 -26.15594 -24.29107 -23.80017 -21.86415 -21.07531 -20.06571 -19.43570 -19.22327 -18.01353 -17.46166 -17.18967 -16.46342 -16.09739 -15.70144 -15.41396 -15.13362 -14.70704 -14.65409 -14.36380 -13.98595 -13.85834 -13.76704 -13.30834 -13.00479 -12.90774 -12.71535 -12.46387 -12.40742 -12.23270 -11.88739 -11.65924 -11.59459 -11.25897 -11.12006 -11.00727 -10.59713 -10.46322 -10.39397 -10.34298 -10.29076 -10.19704 -9.59260 -9.19814 -8.62204 -8.27651 -8.04296 -6.48790 -3.89908 -0.64302 0.42615 1.11962 1.60398 2.28996 2.54772 3.11665 3.23256 3.29802 3.57465 3.77577 3.81594 4.02747 4.09228 4.25303 4.31580 4.38883 4.66138 4.72188 4.86741 4.97747 5.02179 5.12158 5.17052 5.19355 5.28254 5.33030 5.59923 5.61525 5.70596 5.80310 5.82872 5.93803 6.01739 6.15329 6.86775 6.95984 7.28363 7.38255 7.48975 7.52970 7.98446 8.52412 9.10577 9.45720 9.96138 10.68708 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.002688 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.387882 B =10412.647206 C =12100.457194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.084 0.916 4 C -0.117 4.117 5 C 0.084 3.916 6 H 0.098 0.902 7 N -0.649 5.649 8 C 0.046 3.954 9 C 0.438 3.562 10 O -0.583 6.583 11 N -0.561 5.561 12 C -0.300 4.300 13 H 0.104 0.896 14 C 0.023 3.977 15 N -0.900 5.900 16 Si 0.929 3.071 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.054 3.946 21 N -0.603 5.603 22 C 0.618 3.382 23 O -0.517 6.517 24 C -0.293 4.293 25 C 0.074 3.926 26 N -0.253 5.253 27 N -0.268 5.268 28 S 0.441 5.559 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.354 0.646 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.720 12.789 -9.780 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.102 0.898 4 C -0.156 4.156 5 C -0.029 4.029 6 H 0.117 0.883 7 N -0.281 5.281 8 C -0.086 4.086 9 C 0.224 3.776 10 O -0.467 6.467 11 N -0.198 5.198 12 C -0.430 4.430 13 H 0.122 0.878 14 C -0.178 4.178 15 N -0.541 5.541 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.073 4.073 21 N -0.337 5.337 22 C 0.403 3.597 23 O -0.394 6.394 24 C -0.434 4.434 25 C -0.094 4.094 26 N -0.117 5.117 27 N -0.248 5.248 28 S 0.577 5.423 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.175 0.825 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.315 11.647 -9.397 18.761 hybrid contribution 0.064 0.265 -0.879 0.921 sum -11.251 11.912 -10.276 19.341 Atomic orbital electron populations 1.22145 0.94099 1.02695 1.03197 1.21827 0.95055 0.96442 0.83131 0.89791 1.22802 0.97484 0.99526 0.95752 1.22791 0.98630 0.93948 0.87488 0.88346 1.60119 1.05170 1.07014 1.55806 1.21797 0.89778 0.98440 0.98615 1.19721 0.84194 0.86857 0.86857 1.90538 1.42678 1.64396 1.49124 1.41865 1.08293 1.25702 1.43906 1.19749 0.95666 1.02707 1.24842 0.87805 1.25268 0.95111 0.99581 0.97888 1.69610 1.01289 1.40979 1.42246 0.85808 0.78611 0.80751 0.79242 1.19171 1.20736 1.20703 1.23613 0.95275 0.89601 0.98799 1.48426 1.51993 1.28568 1.04728 1.16054 0.80154 0.83436 0.80016 1.90842 1.39472 1.26386 1.82669 1.28011 1.11255 1.05099 0.99028 1.24479 0.97601 0.98826 0.88456 1.70823 1.08558 1.00395 1.31936 1.78761 1.19732 1.20062 1.06248 1.83133 1.33201 1.14820 1.11163 0.91041 0.91240 0.92227 0.89254 0.88993 0.82451 0.93558 0.89216 0.77446 0.91841 0.90817 0.89674 0.76843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.11 37.16 0.34 -0.96 16 2 C 0.14 1.12 3.48 -66.70 -0.23 0.89 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -0.93 6.16 -24.90 -0.15 -1.08 16 5 C 0.08 0.76 3.38 -65.56 -0.22 0.54 16 6 H 0.10 0.84 7.83 -51.93 -0.41 0.43 16 7 N -0.65 -8.25 6.04 -105.73 -0.64 -8.89 16 8 C 0.05 0.68 6.03 -4.98 -0.03 0.65 16 9 C 0.44 9.39 7.82 -10.99 -0.09 9.30 16 10 O -0.58 -14.64 15.78 5.55 0.09 -14.55 16 11 N -0.56 -13.27 5.29 -10.96 -0.06 -13.33 16 12 C -0.30 -7.99 9.68 -14.93 -0.14 -8.13 16 13 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -23.59 13.05 55.50 0.72 -22.86 16 16 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 20 C 0.05 0.45 5.36 -2.52 -0.01 0.43 16 21 N -0.60 -5.46 3.08 -164.02 -0.51 -5.97 16 22 C 0.62 6.53 7.64 -12.63 -0.10 6.43 16 23 O -0.52 -6.69 16.05 5.26 0.08 -6.60 16 24 C -0.29 -2.82 6.66 -35.95 -0.24 -3.06 16 25 C 0.07 0.69 11.55 -17.80 -0.21 0.49 16 26 N -0.25 -2.90 11.54 30.36 0.35 -2.55 16 27 N -0.27 -3.13 12.51 60.35 0.75 -2.37 16 28 S 0.44 3.99 19.59 -107.50 -2.11 1.89 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.67 6.93 -51.93 -0.36 0.31 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.74 7.85 -51.93 -0.41 0.34 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.35 4.62 7.89 -39.29 -0.31 4.31 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 37 H 0.39 8.84 7.90 -40.82 -0.32 8.52 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.07 0.57 5.15 -33.68 -0.17 0.40 16 40 H 0.09 0.66 7.74 -51.93 -0.40 0.26 16 41 H 0.22 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -32.26 359.78 -6.94 -39.20 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.85 Total: 9.28 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.18 Total: 6.01 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.63 Total: -55.97 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.17 Total: -21.15 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -2.11 Total: 1.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.26 -6.94 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283946805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.821 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds