Wall clock time and date at job start Tue Mar 31 2020 23:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.99834 * 2 1 4 4 C 1.54323 * 109.88368 * 121.09377 * 2 1 3 5 5 C 1.55153 * 103.10236 * 141.70038 * 4 2 1 6 6 H 1.09003 * 111.00505 * 82.48412 * 5 4 2 7 7 N 1.46898 * 111.00907 * 206.33611 * 5 4 2 8 8 C 1.46892 * 111.00450 * 205.00102 * 7 5 4 9 9 C 1.50705 * 109.47372 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99481 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99895 * 179.97438 * 9 8 7 12 12 C 1.37102 * 119.99651 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99964 * 359.97438 * 12 11 9 14 14 C 1.38948 * 119.99911 * 180.02562 * 12 11 9 15 15 N 1.31409 * 120.00313 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00073 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46707 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46696 * 120.00139 * 16 14 12 19 19 H 1.48496 * 109.47208 * 240.00532 * 16 14 12 20 20 C 1.54915 * 101.58175 * 324.40929 * 5 4 2 21 21 N 1.47428 * 104.83102 * 37.00975 * 20 5 4 22 22 C 1.34778 * 125.64860 * 155.91040 * 21 20 5 23 23 O 1.21619 * 120.00082 * 179.97438 * 22 21 20 24 24 C 1.47170 * 119.99754 * 359.97438 * 22 21 20 25 25 C 1.38246 * 128.47199 * 179.97438 * 24 22 21 26 26 N 1.31249 * 111.88694 * 180.02562 * 25 24 22 27 27 N 1.27336 * 120.03823 * 359.97438 * 26 25 24 28 28 S 1.56642 * 109.73737 * 359.69582 * 27 26 25 29 29 H 1.09004 * 109.47442 * 298.90270 * 1 2 3 30 30 H 1.08999 * 109.47429 * 58.90757 * 1 2 3 31 31 H 1.09004 * 109.47135 * 178.90269 * 1 2 3 32 32 H 1.09002 * 110.72057 * 23.24789 * 4 2 1 33 33 H 1.09003 * 110.71837 * 260.15363 * 4 2 1 34 34 H 1.00900 * 110.99675 * 81.03969 * 7 5 4 35 35 H 1.08999 * 109.47132 * 299.99484 * 8 7 5 36 36 H 1.09000 * 109.47378 * 59.99927 * 8 7 5 37 37 H 0.96992 * 120.00489 * 0.02562 * 11 9 8 38 38 H 0.97003 * 120.00732 * 180.02562 * 15 14 12 39 39 H 1.09000 * 110.36497 * 155.84404 * 20 5 4 40 40 H 1.08996 * 110.36659 * 278.05860 * 20 5 4 41 41 H 1.07999 * 124.05656 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2897 -1.5140 0.6969 6 1 4.1668 -0.8676 0.6652 7 7 3.5558 -2.7204 1.4916 8 6 4.9691 -3.1100 1.4003 9 6 5.2035 -4.3481 2.2268 10 8 4.2833 -4.8563 2.8321 11 7 6.4351 -4.8913 2.2927 12 6 6.6481 -6.0180 3.0442 13 1 5.8290 -6.4700 3.5838 14 6 7.9180 -6.5777 3.1126 15 7 8.9150 -6.0269 2.4572 16 14 8.2085 -8.1125 4.1372 17 1 6.9333 -8.5323 4.7720 18 1 8.7086 -9.2037 3.2630 19 1 9.2140 -7.8215 5.1904 20 6 2.8201 -1.8831 -0.7325 21 7 2.0352 -0.7197 -1.1841 22 6 1.8148 -0.3710 -2.4672 23 8 1.1484 0.6134 -2.7239 24 6 2.3807 -1.1815 -3.5575 25 6 2.2664 -0.9880 -4.9216 26 7 2.9036 -1.9119 -5.6019 27 7 3.5266 -2.8385 -4.9897 28 16 3.3822 -2.6403 -3.4426 29 1 -0.3634 0.4967 0.8997 30 1 -0.3634 0.5307 -0.8800 31 1 -0.3633 -1.0275 -0.0197 32 1 1.3051 -1.4459 1.6183 33 1 2.3499 -0.0459 2.0212 34 1 2.9526 -3.4789 1.2104 35 1 5.2234 -3.3137 0.3601 36 1 5.5944 -2.2996 1.7752 37 1 7.1708 -4.4851 1.8084 38 1 9.8015 -6.4178 2.5046 39 1 3.6788 -2.0380 -1.3857 40 1 2.1969 -2.7770 -0.7080 41 1 1.7179 -0.1746 -5.3732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283946805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:09 Heat of formation + Delta-G solvation = -8.452026 kcal Electronic energy + Delta-G solvation = -26549.924691 eV Core-core repulsion = 22591.860926 eV Total energy + Delta-G solvation = -3958.063765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97121 -41.36077 -40.09593 -38.91744 -36.24449 -35.58625 -33.87818 -33.22275 -32.43656 -31.18012 -28.72050 -27.88139 -26.91856 -25.75891 -24.69036 -22.65038 -21.81981 -21.04196 -20.80977 -19.99540 -19.87045 -18.22441 -18.04975 -17.73070 -17.07909 -16.72979 -16.55610 -16.29119 -15.91253 -15.85507 -15.50897 -15.20884 -15.02091 -14.58900 -14.24631 -14.16969 -13.80623 -13.61280 -13.47474 -13.36745 -13.29013 -13.06109 -12.93653 -12.77860 -12.51284 -12.36350 -12.10289 -11.95451 -11.70624 -11.47636 -11.41991 -11.23939 -11.11798 -10.95911 -10.28851 -9.96934 -9.93755 -9.34024 -8.43620 -5.91251 -1.42011 -0.31157 0.35592 0.82816 1.38709 1.44798 1.54482 1.57922 1.75767 2.11148 2.31263 2.77638 2.94025 3.24474 3.24850 3.34214 3.58238 3.64886 3.70469 3.97312 4.07162 4.18554 4.29618 4.36260 4.47225 4.51684 4.56345 4.62220 4.64085 4.74811 4.94949 5.05675 5.16642 5.29048 5.36529 5.45378 5.90497 6.09864 6.13344 6.38739 6.51843 6.64349 6.74058 7.17436 7.62226 8.17214 8.73712 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.002688 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.387882 B =10412.647206 C =12100.457194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.088 0.912 4 C -0.109 4.109 5 C 0.087 3.913 6 H 0.111 0.889 7 N -0.661 5.661 8 C 0.060 3.940 9 C 0.439 3.561 10 O -0.622 6.622 11 N -0.574 5.574 12 C -0.329 4.329 13 H 0.079 0.921 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.987 3.013 17 H -0.273 1.273 18 H -0.273 1.273 19 H -0.273 1.273 20 C 0.054 3.946 21 N -0.599 5.599 22 C 0.618 3.382 23 O -0.545 6.545 24 C -0.300 4.300 25 C 0.076 3.924 26 N -0.274 5.274 27 N -0.302 5.302 28 S 0.487 5.513 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.351 0.649 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.397 0.603 38 H 0.276 0.724 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 13.438 -9.643 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.106 0.894 4 C -0.147 4.147 5 C -0.024 4.024 6 H 0.129 0.871 7 N -0.293 5.293 8 C -0.072 4.072 9 C 0.226 3.774 10 O -0.509 6.509 11 N -0.212 5.212 12 C -0.459 4.459 13 H 0.097 0.903 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.812 3.188 17 H -0.197 1.197 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.073 4.073 21 N -0.332 5.332 22 C 0.404 3.596 23 O -0.423 6.423 24 C -0.441 4.441 25 C -0.091 4.091 26 N -0.137 5.137 27 N -0.282 5.282 28 S 0.623 5.377 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.172 0.828 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -11.175 12.304 -9.274 19.034 hybrid contribution -0.055 0.104 -0.868 0.876 sum -11.230 12.408 -10.141 19.569 Atomic orbital electron populations 1.22099 0.93959 1.02466 1.03141 1.21912 0.95162 0.96629 0.82751 0.89370 1.22756 0.96788 0.99442 0.95753 1.22811 0.99670 0.92563 0.87386 0.87074 1.60094 1.03873 1.07944 1.57341 1.21676 0.91509 0.95311 0.98722 1.20913 0.82719 0.87845 0.85900 1.90512 1.43721 1.65994 1.50653 1.41939 1.09395 1.25547 1.44313 1.19667 0.95532 1.04449 1.26226 0.90310 1.25955 0.94594 1.01955 0.98676 1.69662 1.01568 1.41987 1.42909 0.84943 0.78172 0.77694 0.78010 1.19740 1.19855 1.19880 1.23643 0.95610 0.89557 0.98476 1.48456 1.51542 1.28651 1.04583 1.16116 0.79866 0.83140 0.80452 1.90831 1.40810 1.27609 1.83094 1.28009 1.11630 1.05481 0.98973 1.24804 0.97060 0.98749 0.88500 1.70850 1.09251 1.00879 1.32753 1.78599 1.20845 1.20890 1.07908 1.82858 1.31788 1.13631 1.09384 0.89455 0.92992 0.92443 0.89550 0.87865 0.82791 0.90608 0.87270 0.76926 0.91440 0.90080 0.88912 0.74950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.11 71.98 0.66 -1.62 16 2 C 0.14 1.94 3.48 45.25 0.16 2.10 16 3 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 4 C -0.11 -1.44 6.16 31.78 0.20 -1.24 16 5 C 0.09 1.32 3.38 46.31 0.16 1.48 16 6 H 0.11 1.47 7.83 -2.39 -0.02 1.45 16 7 N -0.66 -15.22 6.04 -488.41 -2.95 -18.17 16 8 C 0.06 1.61 6.03 85.56 0.52 2.12 16 9 C 0.44 18.50 7.82 87.66 0.69 19.19 16 10 O -0.62 -31.38 15.78 -3.07 -0.05 -31.43 16 11 N -0.57 -27.14 5.29 -306.99 -1.62 -28.77 16 12 C -0.33 -17.74 9.68 84.04 0.81 -16.92 16 13 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 14 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 15 N -0.92 -47.75 13.05 21.66 0.28 -47.47 16 16 Si 0.99 41.52 29.55 68.60 2.03 43.55 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 20 C 0.05 0.75 5.36 86.86 0.47 1.21 16 21 N -0.60 -9.62 3.08 -791.08 -2.44 -12.06 16 22 C 0.62 12.16 7.64 86.59 0.66 12.82 16 23 O -0.54 -13.57 16.05 -4.09 -0.07 -13.63 16 24 C -0.30 -5.34 6.66 24.62 0.16 -5.18 16 25 C 0.08 1.36 11.55 84.78 0.98 2.34 16 26 N -0.27 -6.09 11.54 -57.86 -0.67 -6.76 16 27 N -0.30 -6.81 12.51 37.02 0.46 -6.35 16 28 S 0.49 8.03 19.59 -56.49 -1.11 6.92 16 29 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.05 0.95 6.93 -2.39 -0.02 0.93 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 1.24 7.85 -2.39 -0.02 1.22 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.35 8.52 7.89 -89.69 -0.71 7.81 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.11 2.58 8.09 -2.39 -0.02 2.56 16 37 H 0.40 17.71 7.90 -92.71 -0.73 16.98 16 38 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 39 H 0.08 1.01 5.15 -13.99 -0.07 0.94 16 40 H 0.09 1.20 7.74 -2.39 -0.02 1.18 16 41 H 0.23 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -70.02 359.78 -0.60 -70.62 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.39 Total: 27.39 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 5.92 Total: 16.15 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -6.93 Total: -119.57 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.11 Total: -45.06 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 8.03 SS G_CDS: -1.11 Total: 6.92 kcal Total: -70.02 -0.60 -70.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283946805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.166 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds