Wall clock time and date at job start Tue Mar 31 2020 23:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.87424 * 2 1 4 4 C 1.54318 * 109.88364 * 121.17843 * 2 1 3 5 5 C 1.55151 * 102.94375 * 97.22396 * 4 2 1 6 6 H 1.08998 * 111.00631 * 277.43091 * 5 4 2 7 7 N 1.46903 * 111.00535 * 153.57488 * 5 4 2 8 8 C 1.46901 * 111.00093 * 161.35191 * 7 5 4 9 9 C 1.50697 * 109.47384 * 179.97438 * 8 7 5 10 10 O 1.21298 * 119.99808 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99942 * 179.97438 * 9 8 7 12 12 C 1.37099 * 119.99792 * 180.02562 * 11 9 8 13 13 H 1.08005 * 120.00054 * 0.02562 * 12 11 9 14 14 C 1.38951 * 120.00261 * 180.02562 * 12 11 9 15 15 N 1.31407 * 119.99440 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00327 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46665 * 89.99892 * 16 14 12 18 18 H 1.48497 * 109.47394 * 210.00297 * 16 14 12 19 19 H 1.48502 * 109.46887 * 330.00423 * 16 14 12 20 20 C 1.54917 * 101.58025 * 35.50254 * 5 4 2 21 21 N 1.47017 * 109.88408 * 238.98980 * 2 1 3 22 22 C 1.34784 * 125.64909 * 59.48137 * 21 2 1 23 23 O 1.21618 * 119.99678 * 0.02562 * 22 21 2 24 24 C 1.47173 * 119.99711 * 180.02562 * 22 21 2 25 25 C 1.38241 * 128.47136 * 180.02562 * 24 22 21 26 26 N 1.31238 * 111.89000 * 180.02562 * 25 24 22 27 27 N 1.27337 * 120.03456 * 359.97438 * 26 25 24 28 28 S 1.56632 * 109.74216 * 359.69582 * 27 26 25 29 29 H 1.08998 * 109.47081 * 179.56008 * 1 2 3 30 30 H 1.09002 * 109.47307 * 299.55877 * 1 2 3 31 31 H 1.09005 * 109.47557 * 59.55545 * 1 2 3 32 32 H 1.08998 * 110.72193 * 338.86145 * 4 2 1 33 33 H 1.09005 * 110.72093 * 215.58945 * 4 2 1 34 34 H 1.00899 * 111.00063 * 285.30610 * 7 5 4 35 35 H 1.09001 * 109.47252 * 300.00580 * 8 7 5 36 36 H 1.09007 * 109.46826 * 60.00126 * 8 7 5 37 37 H 0.96988 * 120.00238 * 0.02562 * 11 9 8 38 38 H 0.97005 * 119.99952 * 180.02562 * 15 14 12 39 39 H 1.09001 * 110.36355 * 81.83037 * 20 5 4 40 40 H 1.09003 * 110.36286 * 204.14951 * 20 5 4 41 41 H 1.08005 * 124.06013 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 1.2416 5 6 2.3518 -2.1704 0.6892 6 1 1.4452 -2.7745 0.6563 7 7 3.3966 -2.8351 1.4797 8 6 3.3757 -4.2880 1.2638 9 6 4.4591 -4.9340 2.0885 10 8 5.1775 -4.2512 2.7878 11 7 4.6289 -6.2705 2.0499 12 6 5.6141 -6.8582 2.8006 13 1 6.2539 -6.2503 3.4232 14 6 5.7897 -8.2360 2.7605 15 7 5.0116 -8.9756 2.0026 16 14 7.1325 -9.0367 3.7827 17 1 6.5909 -9.3941 5.1185 18 1 7.6107 -10.2643 3.0976 19 1 8.2634 -8.0879 3.9448 20 6 2.8568 -1.8486 -0.7395 21 7 2.0300 -0.7123 -1.1849 22 6 1.7741 -0.3816 -2.4663 23 8 1.0748 0.5811 -2.7178 24 6 2.3410 -1.1856 -3.5609 25 6 2.1948 -1.0073 -4.9240 26 7 2.8441 -1.9190 -5.6091 27 7 3.5046 -2.8225 -5.0018 28 16 3.3850 -2.6150 -3.4539 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3634 0.5070 0.8939 31 1 -0.3634 0.5207 -0.8860 32 1 1.2918 -0.7919 2.0189 33 1 2.9657 -0.2854 1.6178 34 1 4.3064 -2.4516 1.2716 35 1 2.4056 -4.6858 1.5619 36 1 3.5471 -4.5010 0.2086 37 1 4.0542 -6.8165 1.4911 38 1 5.1339 -9.9375 1.9748 39 1 3.9091 -1.5656 -0.7151 40 1 2.7088 -2.7060 -1.3962 41 1 1.6151 -0.2134 -5.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283946807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:13 Heat of formation + Delta-G solvation = 16.883432 kcal Electronic energy + Delta-G solvation = -26621.374803 eV Core-core repulsion = 22664.409666 eV Total energy + Delta-G solvation = -3956.965137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19499 -40.63496 -38.60059 -37.89032 -35.01732 -33.88987 -33.13969 -31.72199 -31.32522 -30.12939 -27.92148 -26.46209 -26.18748 -24.33882 -23.82111 -22.14097 -20.85783 -20.09756 -19.43664 -19.20147 -18.00531 -17.54357 -16.87188 -16.59765 -16.01280 -15.79817 -15.50568 -15.16188 -14.77532 -14.57792 -14.17504 -14.06439 -13.88420 -13.62734 -13.34500 -13.20669 -12.98052 -12.64739 -12.54034 -12.29936 -12.22195 -11.94309 -11.65223 -11.60117 -11.25450 -11.10137 -10.95225 -10.57773 -10.46751 -10.44444 -10.33254 -10.28279 -10.18330 -9.58064 -9.20555 -8.62737 -8.27785 -8.04253 -6.48678 -3.89780 -0.63840 0.43171 1.12692 1.60690 2.29773 2.54603 3.13276 3.22946 3.28059 3.57732 3.77678 3.81828 4.02155 4.10156 4.26516 4.31933 4.37099 4.67194 4.69754 4.87244 4.97019 5.01570 5.12117 5.17262 5.19655 5.27113 5.37783 5.59038 5.61903 5.71003 5.78354 5.82136 5.91036 6.05222 6.14888 6.86352 6.95637 7.28887 7.38267 7.48861 7.53127 7.98222 8.52509 9.10535 9.45676 9.96190 10.68767 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.002752 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.140120 B =10172.530635 C =11881.287664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.083 0.917 4 C -0.117 4.117 5 C 0.085 3.915 6 H 0.100 0.900 7 N -0.649 5.649 8 C 0.046 3.954 9 C 0.438 3.562 10 O -0.583 6.583 11 N -0.561 5.561 12 C -0.301 4.301 13 H 0.104 0.896 14 C 0.024 3.976 15 N -0.900 5.900 16 Si 0.930 3.070 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.051 3.949 21 N -0.602 5.602 22 C 0.618 3.382 23 O -0.517 6.517 24 C -0.294 4.294 25 C 0.074 3.926 26 N -0.253 5.253 27 N -0.267 5.267 28 S 0.442 5.558 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.354 0.646 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.057 15.038 -9.082 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.101 0.899 4 C -0.155 4.155 5 C -0.027 4.027 6 H 0.118 0.882 7 N -0.281 5.281 8 C -0.086 4.086 9 C 0.223 3.777 10 O -0.467 6.467 11 N -0.197 5.197 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.178 4.178 15 N -0.541 5.541 16 Si 0.757 3.243 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.076 4.076 21 N -0.336 5.336 22 C 0.404 3.596 23 O -0.393 6.393 24 C -0.435 4.435 25 C -0.094 4.094 26 N -0.117 5.117 27 N -0.248 5.248 28 S 0.578 5.422 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.175 0.825 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.173 14.200 -8.685 18.544 hybrid contribution -0.177 0.130 -0.921 0.947 sum -8.350 14.330 -9.607 19.167 Atomic orbital electron populations 1.22181 0.94153 1.02693 1.03299 1.21723 0.95138 0.96466 0.83178 0.89868 1.22775 1.02930 0.93981 0.95863 1.22799 0.96583 0.95922 0.87423 0.88233 1.60137 1.08509 1.03083 1.56336 1.21783 1.00469 0.88238 0.98147 1.19719 0.87572 0.83221 0.87146 1.90539 1.48892 1.62635 1.44681 1.41856 1.31633 1.05153 1.41077 1.19700 1.10493 0.90544 1.22308 0.87858 1.25266 0.98595 0.96302 0.97659 1.69604 1.38869 1.06579 1.39064 0.85860 0.80616 0.78509 0.79342 1.20347 1.20912 1.19375 1.23681 0.96305 0.88544 0.99102 1.48299 1.50179 1.30407 1.04720 1.16051 0.80283 0.83287 0.80002 1.90839 1.38114 1.27579 1.82813 1.28003 1.10607 1.05818 0.99028 1.24475 0.97963 0.98531 0.88382 1.70821 1.07961 1.00974 1.31961 1.78759 1.19213 1.20466 1.06339 1.83143 1.32066 1.15944 1.11061 0.92247 0.91114 0.91077 0.88761 0.89442 0.82462 0.89221 0.93592 0.77445 0.91789 0.89674 0.90774 0.76844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.06 37.16 0.34 -0.96 16 2 C 0.14 1.12 3.49 -66.96 -0.23 0.88 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -0.92 6.19 -24.90 -0.15 -1.07 16 5 C 0.09 0.77 3.32 -65.56 -0.22 0.56 16 6 H 0.10 0.87 7.92 -51.93 -0.41 0.45 16 7 N -0.65 -8.26 6.00 -105.72 -0.63 -8.89 16 8 C 0.05 0.68 6.04 -4.98 -0.03 0.65 16 9 C 0.44 9.39 7.82 -10.99 -0.09 9.30 16 10 O -0.58 -14.64 15.78 5.54 0.09 -14.55 16 11 N -0.56 -13.27 5.29 -10.96 -0.06 -13.32 16 12 C -0.30 -8.01 9.68 -14.93 -0.14 -8.16 16 13 H 0.10 2.90 7.16 -52.48 -0.38 2.52 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 15 N -0.90 -23.58 13.05 55.50 0.72 -22.86 16 16 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 C 0.05 0.42 5.33 -2.53 -0.01 0.41 16 21 N -0.60 -5.47 3.08 -164.37 -0.51 -5.97 16 22 C 0.62 6.55 7.62 -12.63 -0.10 6.45 16 23 O -0.52 -6.67 15.87 5.26 0.08 -6.59 16 24 C -0.29 -2.84 6.66 -35.95 -0.24 -3.08 16 25 C 0.07 0.70 11.55 -17.80 -0.21 0.49 16 26 N -0.25 -2.92 11.54 30.36 0.35 -2.57 16 27 N -0.27 -3.15 12.51 60.35 0.75 -2.40 16 28 S 0.44 4.05 19.60 -107.50 -2.11 1.95 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.69 6.74 -51.93 -0.35 0.34 16 32 H 0.09 0.68 7.83 -51.93 -0.41 0.28 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.35 4.63 8.00 -39.29 -0.31 4.31 16 35 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.39 8.84 7.90 -40.82 -0.32 8.52 16 38 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.09 0.66 7.80 -51.93 -0.41 0.26 16 40 H 0.07 0.58 5.17 -33.98 -0.18 0.41 16 41 H 0.22 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -32.21 359.54 -6.94 -39.16 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.85 Total: 9.32 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.18 Total: 5.98 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.63 Total: -56.02 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.17 Total: -21.14 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -2.11 Total: 1.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.21 -6.94 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283946807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.040 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds