Wall clock time and date at job start Tue Mar 31 2020 22:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47045 * 270.00251 * 3 2 1 5 5 H 1.48502 * 109.46777 * 30.00018 * 3 2 1 6 6 H 1.48496 * 109.47230 * 150.00044 * 3 2 1 7 7 C 1.38798 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00126 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00262 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00400 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47367 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99964 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99711 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99529 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.91122 * 26.88993 * 14 13 11 16 16 C 1.53776 * 113.61375 * 158.14487 * 14 13 11 17 17 C 1.53780 * 87.08586 * 89.11353 * 16 14 13 18 18 H 1.08997 * 113.61131 * 140.06287 * 17 16 14 19 19 N 1.46494 * 113.61363 * 270.88605 * 17 16 14 20 20 C 1.34778 * 119.99991 * 274.90072 * 19 17 16 21 21 O 1.21287 * 119.99798 * 359.72929 * 20 19 17 22 22 C 1.50697 * 120.00247 * 179.72712 * 20 19 17 23 23 N 1.46494 * 109.47245 * 180.02562 * 22 20 19 24 24 N 1.28602 * 124.61906 * 269.69919 * 23 22 20 25 25 C 1.31382 * 108.71614 * 179.83075 * 24 23 22 26 26 C 1.39678 * 105.90266 * 0.41605 * 25 24 23 27 27 N 1.28605 * 124.62040 * 90.00456 * 23 22 20 28 28 C 1.53781 * 113.61542 * 255.63831 * 14 13 11 29 29 H 0.96995 * 119.99970 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47173 * 59.99789 * 10 9 7 31 31 H 1.09006 * 109.47407 * 300.00514 * 10 9 7 32 32 H 0.96997 * 120.00315 * 0.02562 * 13 11 10 33 33 H 1.09006 * 113.61569 * 334.56528 * 16 14 13 34 34 H 1.09000 * 113.68919 * 203.68038 * 16 14 13 35 35 H 0.96999 * 120.00253 * 94.63268 * 19 17 16 36 36 H 1.09005 * 109.47125 * 300.00691 * 22 20 19 37 37 H 1.09004 * 109.47080 * 59.99907 * 22 20 19 38 38 H 1.08004 * 127.04926 * 180.15823 * 25 24 23 39 39 H 1.07994 * 127.04975 * 179.72820 * 26 25 24 40 40 H 1.09003 * 113.61934 * 156.33609 * 28 14 13 41 41 H 1.09008 * 113.61480 * 25.43410 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5731 -3.2326 -0.0008 12 8 6.3440 -2.2964 -0.0014 13 7 6.0456 -4.4948 -0.0011 14 6 7.4906 -4.7359 -0.0016 15 1 8.0567 -3.9225 0.4524 16 6 7.8832 -6.1272 0.5226 17 6 7.7458 -6.6253 -0.9258 18 1 8.5170 -7.3382 -1.2173 19 7 6.3946 -7.0784 -1.2649 20 6 6.0172 -8.3414 -0.9843 21 8 6.7978 -9.1044 -0.4556 22 6 4.6252 -8.8057 -1.3275 23 7 4.4639 -10.2049 -0.9246 24 7 4.7175 -11.2160 -1.6778 25 6 4.4682 -12.3163 -1.0045 26 6 4.0203 -11.9028 0.2523 27 7 4.0441 -10.5894 0.2286 28 6 8.0404 -5.1818 -1.3668 29 1 -0.4850 0.8400 0.0004 30 1 3.6433 -3.4318 -0.8906 31 1 3.6439 -3.4315 0.8893 32 1 5.4290 -5.2435 -0.0018 33 1 7.1508 -6.5596 1.2043 34 1 8.9017 -6.1789 0.9075 35 1 5.7703 -6.4682 -1.6877 36 1 3.8964 -8.1898 -0.8005 37 1 4.4669 -8.7162 -2.4023 38 1 4.5819 -13.3322 -1.3529 39 1 3.7165 -12.5334 1.0747 40 1 9.1021 -4.9737 -1.4992 41 1 7.4348 -4.8509 -2.2106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284078387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:35 Heat of formation + Delta-G solvation = 72.549565 kcal Electronic energy + Delta-G solvation = -26104.002892 eV Core-core repulsion = 22149.451619 eV Total energy + Delta-G solvation = -3954.551273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.82910 -41.05941 -39.51216 -38.11173 -34.28142 -34.00775 -32.91171 -32.68985 -32.49669 -29.48031 -28.76205 -26.18865 -25.69969 -24.76153 -23.17636 -22.63315 -21.30811 -20.50083 -20.06904 -18.27149 -17.97788 -17.83252 -16.87905 -16.34258 -16.17434 -16.13465 -15.83904 -15.51591 -15.08371 -15.02730 -14.80681 -14.66887 -14.21318 -13.93362 -13.48927 -13.13647 -13.04636 -12.84918 -12.66196 -12.28749 -12.16287 -11.92436 -11.33179 -11.32714 -11.07792 -11.06241 -10.86802 -10.69969 -10.61912 -10.59392 -9.92237 -9.70161 -9.62944 -9.57839 -9.14917 -9.05477 -8.58114 -6.99465 -6.34814 -4.07453 1.39397 1.78049 1.95035 2.23225 2.56489 2.69229 2.80141 3.19979 3.28416 3.45390 3.54959 3.80751 3.93931 4.02737 4.22608 4.27432 4.39239 4.46677 4.49052 4.64740 4.74726 4.76137 5.04325 5.06540 5.13509 5.25625 5.30188 5.41493 5.55182 5.59952 5.63494 5.68553 5.70331 5.88291 5.88794 5.96840 6.28108 6.45523 6.82476 7.42877 7.55614 7.88060 8.02703 8.33425 8.35215 9.11198 10.74353 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.002455 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.052727 B =11402.010749 C =13147.924925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.139 6.139 10 C -0.126 4.126 11 C 0.533 3.467 12 O -0.513 6.513 13 N -0.722 5.722 14 C 0.123 3.877 15 H 0.106 0.894 16 C -0.155 4.155 17 C 0.122 3.878 18 H 0.097 0.903 19 N -0.710 5.710 20 C 0.505 3.495 21 O -0.514 6.514 22 C 0.120 3.880 23 N -0.146 5.146 24 N -0.283 5.283 25 C -0.024 4.024 26 C -0.023 4.023 27 N -0.279 5.279 28 C -0.154 4.154 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.395 0.605 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.405 0.595 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.198 0.802 39 H 0.199 0.801 40 H 0.108 0.892 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.455 -21.903 -3.377 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.087 5.913 10 C -0.277 4.277 11 C 0.319 3.681 12 O -0.386 6.386 13 N -0.376 5.376 14 C 0.017 3.983 15 H 0.124 0.876 16 C -0.194 4.194 17 C 0.018 3.982 18 H 0.115 0.885 19 N -0.364 5.364 20 C 0.288 3.712 21 O -0.388 6.388 22 C -0.004 4.004 23 N -0.046 5.046 24 N -0.123 5.123 25 C -0.207 4.207 26 C -0.207 4.207 27 N -0.119 5.119 28 C -0.193 4.193 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.230 0.770 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.241 0.759 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.215 0.785 39 H 0.216 0.784 40 H 0.126 0.874 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.280 -19.439 -3.375 24.355 hybrid contribution -1.551 -1.381 0.061 2.077 sum 12.729 -20.819 -3.314 24.626 Atomic orbital electron populations 1.69933 1.05918 1.27845 1.47863 1.24715 0.94457 0.98992 0.93138 0.86738 0.81891 0.83296 0.79945 1.19186 1.19894 1.15933 1.22297 0.88190 0.97534 1.59013 0.89372 1.84830 1.09374 0.99652 1.97426 1.23296 0.93777 1.04792 1.05811 1.20342 0.90638 0.82201 0.74939 1.90710 1.58716 1.42064 1.47139 1.45786 1.06398 1.07972 1.77475 1.21843 0.82287 0.98040 0.96172 0.87571 1.23735 1.03530 0.95280 0.96830 1.21953 0.83741 0.96282 0.96274 0.88543 1.45711 1.15438 1.12312 1.62965 1.20488 0.89128 0.82359 0.79183 1.90808 1.53298 1.53685 1.40962 1.21700 0.97300 0.76427 1.05023 1.47257 1.44649 1.06543 1.06104 1.74045 1.18789 0.95031 1.24447 1.24803 1.04344 0.98430 0.93119 1.24818 1.05382 0.90443 1.00013 1.74084 1.16500 1.15399 1.05957 1.23769 1.03189 0.93377 0.98957 0.91876 0.88493 0.88396 0.77010 0.90370 0.87620 0.75873 0.84066 0.84186 0.78477 0.78444 0.87372 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.97 55.49 0.78 -25.18 16 2 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 3 Si 0.86 21.25 27.74 -169.99 -4.71 16.53 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 7 C -0.52 -14.53 10.04 30.94 0.31 -14.22 16 8 H 0.09 2.55 8.03 -52.49 -0.42 2.12 16 9 S -0.14 -3.36 18.55 -107.50 -1.99 -5.35 16 10 C -0.13 -2.21 6.16 36.01 0.22 -1.99 16 11 C 0.53 8.42 7.85 -10.99 -0.09 8.34 16 12 O -0.51 -10.17 15.50 5.56 0.09 -10.08 16 13 N -0.72 -7.72 4.96 -53.02 -0.26 -7.98 16 14 C 0.12 1.15 4.28 -67.12 -0.29 0.87 16 15 H 0.11 1.19 7.54 -51.93 -0.39 0.80 16 16 C -0.15 -1.22 7.61 -25.92 -0.20 -1.42 16 17 C 0.12 0.90 4.00 -67.12 -0.27 0.63 16 18 H 0.10 0.77 8.04 -51.93 -0.42 0.35 16 19 N -0.71 -4.63 4.34 -53.02 -0.23 -4.86 16 20 C 0.51 4.46 7.90 -10.99 -0.09 4.37 16 21 O -0.51 -6.91 16.37 5.55 0.09 -6.82 16 22 C 0.12 0.82 7.02 -5.20 -0.04 0.79 16 23 N -0.15 -1.54 3.44 -11.66 -0.04 -1.58 16 24 N -0.28 -3.09 12.05 30.68 0.37 -2.72 16 25 C -0.02 -0.20 12.20 -17.21 -0.21 -0.41 16 26 C -0.02 -0.20 12.20 -17.21 -0.21 -0.41 16 27 N -0.28 -3.15 12.05 30.67 0.37 -2.78 16 28 C -0.15 -1.11 7.57 -25.92 -0.20 -1.31 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.10 1.51 8.14 -51.91 -0.42 1.09 16 31 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 32 H 0.40 3.25 7.18 -40.82 -0.29 2.96 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.41 1.81 7.81 -40.82 -0.32 1.49 16 36 H 0.14 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.20 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.20 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.63 8.13 -51.92 -0.42 0.20 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -39.30 370.40 -6.34 -45.63 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.23 Total: 1.75 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.14 Total: -2.14 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.98 Total: -45.10 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.18 Total: -16.90 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.53 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.30 -6.34 -45.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284078387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.181 kcal (2) G-P(sol) polarization free energy of solvation -39.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds