Wall clock time and date at job start Tue Mar 31 2020 22:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47045 * 270.00251 * 3 2 1 5 5 H 1.48502 * 109.46777 * 30.00018 * 3 2 1 6 6 H 1.48496 * 109.47230 * 150.00044 * 3 2 1 7 7 C 1.38798 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00126 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00262 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00400 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47367 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99964 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99711 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99529 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.91122 * 26.88993 * 14 13 11 16 16 C 1.53776 * 113.61375 * 158.14487 * 14 13 11 17 17 C 1.53780 * 87.08586 * 89.11353 * 16 14 13 18 18 H 1.08997 * 113.61131 * 140.06287 * 17 16 14 19 19 N 1.46494 * 113.61363 * 270.88605 * 17 16 14 20 20 C 1.34778 * 119.99991 * 274.90072 * 19 17 16 21 21 O 1.21287 * 119.99798 * 359.72929 * 20 19 17 22 22 C 1.50697 * 120.00247 * 179.72712 * 20 19 17 23 23 N 1.46494 * 109.47245 * 180.02562 * 22 20 19 24 24 N 1.28602 * 124.61906 * 269.69919 * 23 22 20 25 25 C 1.31382 * 108.71614 * 179.83075 * 24 23 22 26 26 C 1.39678 * 105.90266 * 0.41605 * 25 24 23 27 27 N 1.28605 * 124.62040 * 90.00456 * 23 22 20 28 28 C 1.53781 * 113.61542 * 255.63831 * 14 13 11 29 29 H 0.96995 * 119.99970 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47173 * 59.99789 * 10 9 7 31 31 H 1.09006 * 109.47407 * 300.00514 * 10 9 7 32 32 H 0.96997 * 120.00315 * 0.02562 * 13 11 10 33 33 H 1.09006 * 113.61569 * 334.56528 * 16 14 13 34 34 H 1.09000 * 113.68919 * 203.68038 * 16 14 13 35 35 H 0.96999 * 120.00253 * 94.63268 * 19 17 16 36 36 H 1.09005 * 109.47125 * 300.00691 * 22 20 19 37 37 H 1.09004 * 109.47080 * 59.99907 * 22 20 19 38 38 H 1.08004 * 127.04926 * 180.15823 * 25 24 23 39 39 H 1.07994 * 127.04975 * 179.72820 * 26 25 24 40 40 H 1.09003 * 113.61934 * 156.33609 * 28 14 13 41 41 H 1.09008 * 113.61480 * 25.43410 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5731 -3.2326 -0.0008 12 8 6.3440 -2.2964 -0.0014 13 7 6.0456 -4.4948 -0.0011 14 6 7.4906 -4.7359 -0.0016 15 1 8.0567 -3.9225 0.4524 16 6 7.8832 -6.1272 0.5226 17 6 7.7458 -6.6253 -0.9258 18 1 8.5170 -7.3382 -1.2173 19 7 6.3946 -7.0784 -1.2649 20 6 6.0172 -8.3414 -0.9843 21 8 6.7978 -9.1044 -0.4556 22 6 4.6252 -8.8057 -1.3275 23 7 4.4639 -10.2049 -0.9246 24 7 4.7175 -11.2160 -1.6778 25 6 4.4682 -12.3163 -1.0045 26 6 4.0203 -11.9028 0.2523 27 7 4.0441 -10.5894 0.2286 28 6 8.0404 -5.1818 -1.3668 29 1 -0.4850 0.8400 0.0004 30 1 3.6433 -3.4318 -0.8906 31 1 3.6439 -3.4315 0.8893 32 1 5.4290 -5.2435 -0.0018 33 1 7.1508 -6.5596 1.2043 34 1 8.9017 -6.1789 0.9075 35 1 5.7703 -6.4682 -1.6877 36 1 3.8964 -8.1898 -0.8005 37 1 4.4669 -8.7162 -2.4023 38 1 4.5819 -13.3322 -1.3529 39 1 3.7165 -12.5334 1.0747 40 1 9.1021 -4.9737 -1.4992 41 1 7.4348 -4.8509 -2.2106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284078387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:34 Heat of formation + Delta-G solvation = 41.297177 kcal Electronic energy + Delta-G solvation = -26105.358097 eV Core-core repulsion = 22149.451619 eV Total energy + Delta-G solvation = -3955.906478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.47922 -41.83513 -40.49774 -39.08678 -35.04961 -34.76128 -34.65574 -33.82952 -33.38276 -30.76847 -29.41236 -27.85167 -26.82906 -25.53286 -23.81351 -23.37943 -22.18817 -21.41677 -20.85211 -19.85126 -18.91635 -18.52354 -18.03177 -17.25988 -17.10790 -16.99731 -16.79880 -16.62279 -16.50187 -15.99112 -15.75632 -15.45812 -15.31842 -14.99827 -14.84465 -14.63485 -14.01658 -13.66400 -13.39605 -13.32434 -13.26291 -13.02971 -13.00452 -12.62332 -12.57111 -12.10184 -11.87103 -11.79145 -11.55492 -11.37354 -11.32499 -11.16257 -11.02221 -10.51732 -10.33644 -10.26012 -10.08452 -8.98041 -8.50771 -6.20978 0.73341 0.99407 1.22579 1.29853 1.31821 1.47164 1.53333 1.55866 1.61819 1.99932 2.21211 2.26018 2.72220 2.87871 3.29564 3.34589 3.38904 3.56180 3.76342 3.87901 3.98479 4.01577 4.08404 4.16922 4.25062 4.47619 4.58824 4.62080 4.73297 4.75962 4.81828 4.94845 4.97958 5.06367 5.25712 5.34517 5.57419 5.66904 5.71645 6.12917 6.25559 6.40654 6.94909 6.95111 7.15978 7.36288 8.61442 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.002455 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.052727 B =11402.010749 C =13147.924925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.237 1.237 7 C -0.526 4.526 8 H 0.064 0.936 9 S -0.176 6.176 10 C -0.114 4.114 11 C 0.540 3.460 12 O -0.556 6.556 13 N -0.697 5.697 14 C 0.111 3.889 15 H 0.090 0.910 16 C -0.145 4.145 17 C 0.125 3.875 18 H 0.094 0.906 19 N -0.697 5.697 20 C 0.509 3.491 21 O -0.564 6.564 22 C 0.112 3.888 23 N -0.157 5.157 24 N -0.312 5.312 25 C -0.025 4.025 26 C -0.027 4.027 27 N -0.313 5.313 28 C -0.138 4.138 29 H 0.276 0.724 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.410 0.590 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.417 0.583 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.231 0.769 39 H 0.229 0.771 40 H 0.126 0.874 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.432 -22.947 -3.927 26.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.161 4.161 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.160 1.160 7 C -0.674 4.674 8 H 0.083 0.917 9 S 0.051 5.949 10 C -0.265 4.265 11 C 0.326 3.674 12 O -0.434 6.434 13 N -0.351 5.351 14 C 0.006 3.994 15 H 0.108 0.892 16 C -0.185 4.185 17 C 0.019 3.981 18 H 0.112 0.888 19 N -0.351 5.351 20 C 0.294 3.706 21 O -0.442 6.442 22 C -0.012 4.012 23 N -0.057 5.057 24 N -0.152 5.152 25 C -0.208 4.208 26 C -0.210 4.210 27 N -0.153 5.153 28 C -0.177 4.177 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.247 0.753 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.256 0.744 36 H 0.183 0.817 37 H 0.186 0.814 38 H 0.247 0.753 39 H 0.245 0.755 40 H 0.144 0.856 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.242 -20.500 -3.944 25.849 hybrid contribution -1.811 -1.261 0.246 2.220 sum 13.432 -21.761 -3.698 25.838 Atomic orbital electron populations 1.70014 1.07307 1.28968 1.49271 1.25554 0.95239 1.02239 0.93031 0.85885 0.80676 0.79736 0.80202 1.18635 1.18686 1.16050 1.22461 0.90285 0.96648 1.57986 0.91742 1.84766 1.06348 1.06211 1.97587 1.23297 0.95739 0.99693 1.07737 1.19958 0.89379 0.83211 0.74869 1.90705 1.59260 1.43696 1.49716 1.45511 1.07594 1.06635 1.75357 1.22028 0.80865 0.98300 0.98222 0.89161 1.23725 1.04031 0.93730 0.96974 1.21924 0.84040 0.96285 0.95807 0.88797 1.45622 1.15426 1.11919 1.62156 1.20819 0.89450 0.82273 0.78103 1.90785 1.54842 1.55093 1.43456 1.22070 0.96400 0.75611 1.07078 1.47552 1.44872 1.07368 1.05873 1.74002 1.19783 0.95964 1.25459 1.25441 1.03110 0.99366 0.92903 1.25438 1.04475 0.90089 1.00996 1.74034 1.17708 1.16809 1.06788 1.23721 1.04186 0.92503 0.97316 0.91437 0.86024 0.87046 0.75270 0.91521 0.86161 0.74437 0.81724 0.81448 0.75306 0.75507 0.85601 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.69 13.97 21.65 0.30 -54.39 16 2 C 0.04 2.55 5.50 84.86 0.47 3.02 16 3 Si 0.91 43.85 27.74 68.60 1.90 45.75 16 4 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.33 6.74 99.48 0.67 -10.66 16 7 C -0.53 -29.38 10.04 67.95 0.68 -28.70 16 8 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16 9 S -0.18 -8.38 18.55 -56.49 -1.05 -9.43 16 10 C -0.11 -3.80 6.16 71.24 0.44 -3.36 16 11 C 0.54 16.15 7.85 87.66 0.69 16.84 16 12 O -0.56 -21.54 15.50 -3.02 -0.05 -21.59 16 13 N -0.70 -13.35 4.96 -440.04 -2.18 -15.53 16 14 C 0.11 1.88 4.28 45.52 0.19 2.07 16 15 H 0.09 1.91 7.54 -2.39 -0.02 1.89 16 16 C -0.15 -2.03 7.61 31.12 0.24 -1.79 16 17 C 0.12 1.56 4.00 45.52 0.18 1.74 16 18 H 0.09 1.32 8.04 -2.39 -0.02 1.31 16 19 N -0.70 -7.58 4.34 -440.05 -1.91 -9.49 16 20 C 0.51 8.27 7.90 87.66 0.69 8.96 16 21 O -0.56 -14.89 16.37 -3.05 -0.05 -14.94 16 22 C 0.11 1.35 7.02 85.63 0.60 1.95 16 23 N -0.16 -3.15 3.44 -190.81 -0.66 -3.81 16 24 N -0.31 -6.50 12.05 -56.86 -0.69 -7.19 16 25 C -0.03 -0.39 12.20 85.11 1.04 0.64 16 26 C -0.03 -0.44 12.20 85.11 1.04 0.60 16 27 N -0.31 -6.79 12.05 -56.87 -0.69 -7.48 16 28 C -0.14 -1.64 7.57 31.12 0.24 -1.41 16 29 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 32 H 0.41 5.59 7.18 -92.71 -0.67 4.92 16 33 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.42 2.52 7.81 -92.71 -0.72 1.80 16 36 H 0.17 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.17 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.23 1.60 8.06 -2.91 -0.02 1.57 16 39 H 0.23 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.03 8.13 -2.38 -0.02 1.01 16 Total: -1.00 -87.02 370.40 1.10 -85.93 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -0.34 Total: 11.59 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.49 Total: 0.56 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -5.82 Total: -97.87 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.10 Total: -36.53 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.90 Total: 45.75 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.05 Total: -9.43 kcal Total: -87.02 1.10 -85.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284078387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.224 kcal (2) G-P(sol) polarization free energy of solvation -87.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds