Wall clock time and date at job start Tue Mar 31 2020 22:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86808 * 119.99860 * 2 1 4 4 H 1.48499 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47061 * 300.00143 * 3 2 1 6 6 H 1.48501 * 109.47055 * 59.99873 * 3 2 1 7 7 C 1.38791 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00657 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99972 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47204 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99848 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99921 * 180.02562 * 11 10 9 14 14 C 1.46511 * 119.99846 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47111 * 179.97438 * 14 13 11 16 16 H 1.09001 * 110.88596 * 57.42909 * 15 14 13 17 17 C 1.55155 * 111.03735 * 181.32789 * 15 14 13 18 18 C 1.54330 * 102.94292 * 153.59095 * 17 15 14 19 19 N 1.47026 * 107.26840 * 337.81024 * 18 17 15 20 20 C 1.34780 * 125.64391 * 178.97562 * 19 18 17 21 21 O 1.21618 * 119.99544 * 179.97438 * 20 19 18 22 22 C 1.47233 * 119.99947 * 359.97274 * 20 19 18 23 23 C 1.37012 * 127.18406 * 180.02562 * 22 20 19 24 24 N 1.33322 * 106.37003 * 179.97438 * 23 22 20 25 25 N 1.28521 * 109.43847 * 0.02562 * 24 23 22 26 26 N 1.28712 * 110.63667 * 359.75006 * 25 24 23 27 27 H 0.97006 * 126.03729 * 180.27342 * 26 25 24 28 28 C 1.47420 * 108.70428 * 358.94103 * 19 18 17 29 29 H 0.97006 * 120.00207 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47038 * 60.00237 * 10 9 7 31 31 H 1.09003 * 109.47207 * 299.99992 * 10 9 7 32 32 H 0.96999 * 120.00387 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.46803 * 59.99299 * 14 13 11 34 34 H 1.09003 * 109.46973 * 299.99666 * 14 13 11 35 35 H 1.08998 * 110.71769 * 35.23216 * 17 15 14 36 36 H 1.08991 * 110.72382 * 271.95613 * 17 15 14 37 37 H 1.08998 * 109.88224 * 218.39343 * 18 17 15 38 38 H 1.08998 * 109.88221 * 97.22736 * 18 17 15 39 39 H 1.07992 * 126.81329 * 0.02562 * 23 22 20 40 40 H 1.08997 * 110.36858 * 142.96748 * 28 19 18 41 41 H 1.08999 * 110.36307 * 265.28963 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2019 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8913 0.0029 11 6 1.9875 -5.3026 0.0036 12 8 0.7912 -5.5022 0.0038 13 7 2.8443 -6.3430 0.0049 14 6 2.3305 -7.7150 0.0061 15 6 3.5025 -8.6984 0.0068 16 1 4.1527 -8.5275 0.8649 17 6 2.9986 -10.1655 -0.0255 18 6 4.1703 -10.9189 -0.6900 19 7 4.9456 -9.9318 -1.4556 20 6 6.0620 -10.1894 -2.1654 21 8 6.6233 -9.2912 -2.7631 22 6 6.6021 -11.5581 -2.2170 23 6 7.7190 -11.9829 -2.8873 24 7 7.8235 -13.2910 -2.6523 25 7 6.8550 -13.6685 -1.8966 26 7 6.0955 -12.6723 -1.6008 27 1 5.3035 -12.7048 -1.0417 28 6 4.2992 -8.6139 -1.3190 29 1 -0.4851 0.8401 -0.0004 30 1 3.1244 -3.7304 0.8928 31 1 3.1245 -3.7320 -0.8872 32 1 3.8010 -6.1834 0.0051 33 1 1.7221 -7.8759 -0.8839 34 1 1.7216 -7.8742 0.8961 35 1 2.0946 -10.2495 -0.6286 36 1 2.8254 -10.5361 0.9848 37 1 3.7845 -11.6875 -1.3597 38 1 4.8004 -11.3729 0.0748 39 1 8.3833 -11.3779 -3.4864 40 1 5.0510 -7.8269 -1.2603 41 1 3.6247 -8.4337 -2.1560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284371093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:51 Heat of formation + Delta-G solvation = 2.605045 kcal Electronic energy + Delta-G solvation = -25576.364784 eV Core-core repulsion = 21618.780490 eV Total energy + Delta-G solvation = -3957.584295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.53940 -41.32861 -40.51393 -38.90036 -36.09474 -34.79308 -34.58428 -33.32268 -32.36601 -31.20182 -30.01705 -27.75504 -27.28345 -25.48382 -23.98996 -23.67495 -22.14215 -21.66992 -21.52527 -19.85325 -19.22748 -18.15108 -18.00474 -17.61495 -17.49574 -17.10682 -16.88168 -16.65712 -16.52094 -15.83839 -15.66026 -15.42853 -14.96289 -14.72504 -14.49361 -14.28954 -14.11916 -13.85290 -13.41606 -13.35764 -13.15925 -13.04703 -12.90830 -12.72511 -12.55420 -12.36112 -12.08975 -11.94038 -11.74697 -11.70149 -11.52445 -11.16060 -10.94484 -10.75627 -10.27150 -10.11075 -9.96039 -8.65970 -8.35207 -6.12616 -0.30341 1.09559 1.24492 1.27764 1.40945 1.47459 1.58396 1.62492 1.66171 1.82819 2.25318 2.30342 2.97689 2.99157 3.27888 3.31519 3.36235 3.58052 3.72102 3.81829 3.98395 3.98708 4.03384 4.16229 4.25528 4.31114 4.38659 4.53079 4.58396 4.71870 4.76163 4.81664 4.88512 4.92644 5.08971 5.23868 5.42245 5.44591 5.54852 6.07412 6.19910 6.48879 6.66851 7.06709 7.07878 7.24931 8.74111 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.001780 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.070734 B =15724.272891 C =16675.471200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.133 4.133 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.715 5.715 14 C 0.132 3.868 15 C -0.099 4.099 16 H 0.111 0.889 17 C -0.112 4.112 18 C 0.070 3.930 19 N -0.610 5.610 20 C 0.610 3.390 21 O -0.550 6.550 22 C -0.062 4.062 23 C 0.029 3.971 24 N -0.295 5.295 25 N -0.058 5.058 26 N -0.353 5.353 27 H 0.464 0.536 28 C 0.105 3.895 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.415 0.585 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.217 0.783 40 H 0.079 0.921 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.550 -27.925 0.794 30.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.284 4.284 11 C 0.321 3.679 12 O -0.442 6.442 13 N -0.369 5.369 14 C 0.008 3.992 15 C -0.118 4.118 16 H 0.129 0.871 17 C -0.150 4.150 18 C -0.052 4.052 19 N -0.343 5.343 20 C 0.397 3.603 21 O -0.426 6.426 22 C -0.196 4.196 23 C -0.131 4.131 24 N -0.159 5.159 25 N -0.040 5.040 26 N -0.088 5.088 27 H 0.319 0.681 28 C -0.017 4.017 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.234 0.766 40 H 0.097 0.903 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.118 -29.236 0.552 31.283 hybrid contribution 1.231 2.588 0.005 2.866 sum 12.349 -26.647 0.558 29.375 Atomic orbital electron populations 1.70183 1.07906 1.28525 1.48093 1.26102 0.95962 1.03258 0.93790 0.84927 0.78612 0.76472 0.78076 1.18120 1.20001 1.19893 1.23241 0.95339 0.92111 1.58701 0.89991 1.85529 1.10569 0.99191 1.97040 1.23399 1.03547 0.94749 1.06720 1.19959 0.86214 0.86595 0.75103 1.90697 1.17342 1.86077 1.50116 1.45774 1.10207 1.05333 1.75629 1.21364 0.95948 0.79041 1.02849 1.22536 0.96052 0.95656 0.97573 0.87063 1.22660 0.96956 0.91428 1.03948 1.22690 0.94170 0.92529 0.95802 1.48373 1.24947 1.12108 1.48869 1.16419 0.79681 0.85191 0.79038 1.90902 1.60104 1.45688 1.45954 1.22098 1.01176 0.89674 1.06689 1.24280 0.96764 0.91707 1.00337 1.75030 1.15903 1.12359 1.12638 1.78180 1.00003 1.13219 1.12582 1.46161 1.23433 1.04709 1.34508 0.68090 1.22473 0.96496 0.84450 0.98275 0.91998 0.87220 0.87465 0.74869 0.91734 0.90656 0.88805 0.86218 0.88818 0.88580 0.76593 0.90296 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.40 13.22 21.65 0.29 -55.11 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.30 29.55 68.60 2.03 45.32 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 10 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 11 C 0.54 17.96 7.85 87.66 0.69 18.65 16 12 O -0.56 -24.26 15.86 -3.02 -0.05 -24.31 16 13 N -0.72 -14.53 5.41 -463.06 -2.50 -17.03 16 14 C 0.13 1.91 5.13 86.38 0.44 2.35 16 15 C -0.10 -0.64 3.10 -9.41 -0.03 -0.67 16 16 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 17 C -0.11 -0.10 6.42 31.78 0.20 0.10 16 18 C 0.07 0.07 5.13 86.73 0.45 0.51 16 19 N -0.61 -5.84 3.33 -815.89 -2.71 -8.55 16 20 C 0.61 9.41 7.84 86.61 0.68 10.09 16 21 O -0.55 -13.03 17.18 -4.09 -0.07 -13.10 16 22 C -0.06 -0.79 6.98 40.41 0.28 -0.51 16 23 C 0.03 0.44 11.87 84.18 1.00 1.44 16 24 N -0.30 -5.32 12.35 -57.50 -0.71 -6.03 16 25 N -0.06 -0.86 13.35 37.02 0.49 -0.37 16 26 N -0.35 -3.02 6.60 -48.52 -0.32 -3.34 16 27 H 0.46 0.33 5.14 -219.89 -1.13 -0.80 16 28 C 0.11 1.13 6.08 86.86 0.53 1.66 16 29 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 30 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 31 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 32 H 0.41 5.99 8.34 -92.71 -0.77 5.21 16 33 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 0.11 8.04 -2.39 -0.02 0.09 16 36 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.09 -0.21 7.29 -2.39 -0.02 -0.22 16 38 H 0.10 -0.30 7.12 -2.39 -0.02 -0.32 16 39 H 0.22 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.08 1.03 8.04 -2.39 -0.02 1.02 16 41 H 0.07 0.95 8.00 -2.39 -0.02 0.93 16 Total: -1.00 -86.62 365.24 0.26 -86.36 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -0.81 Total: 5.39 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 5.79 Total: 0.12 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -5.47 Total: -90.44 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.12 Total: -37.41 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -86.62 0.26 -86.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284371093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.961 kcal (2) G-P(sol) polarization free energy of solvation -86.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds