Wall clock time and date at job start Tue Mar 31 2020 22:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 120.00222 * 2 1 4 4 H 1.48493 * 109.46854 * 269.99740 * 3 2 1 5 5 H 1.48506 * 109.46758 * 29.99655 * 3 2 1 6 6 H 1.48496 * 109.46951 * 149.99596 * 3 2 1 7 7 C 1.38806 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99947 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99761 * 180.02562 * 7 2 1 10 10 C 1.81010 * 99.99660 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46775 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00165 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99722 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00088 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47367 * 180.02562 * 14 13 11 16 16 H 1.08994 * 110.89041 * 308.88051 * 15 14 13 17 17 C 1.55156 * 111.00511 * 184.99733 * 15 14 13 18 18 C 1.54324 * 102.94272 * 206.42089 * 17 15 14 19 19 N 1.47027 * 107.27233 * 22.19672 * 18 17 15 20 20 C 1.34773 * 125.64926 * 181.01722 * 19 18 17 21 21 O 1.21623 * 119.99874 * 180.02562 * 20 19 18 22 22 C 1.47229 * 120.00212 * 359.75360 * 20 19 18 23 23 C 1.37006 * 127.19159 * 179.97438 * 22 20 19 24 24 N 1.33320 * 106.37129 * 179.84595 * 23 22 20 25 25 N 1.28507 * 109.43975 * 0.42907 * 24 23 22 26 26 N 1.28716 * 110.64063 * 359.72254 * 25 24 23 27 27 H 0.96996 * 126.03772 * 180.02562 * 26 25 24 28 28 C 1.47430 * 108.69819 * 1.28428 * 19 18 17 29 29 H 0.96996 * 120.00117 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46662 * 60.00159 * 10 9 7 31 31 H 1.08995 * 109.47178 * 300.00419 * 10 9 7 32 32 H 0.97001 * 119.99877 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47466 * 59.99983 * 14 13 11 34 34 H 1.09007 * 109.47062 * 299.99987 * 14 13 11 35 35 H 1.09003 * 110.71620 * 88.06202 * 17 15 14 36 36 H 1.08998 * 110.87852 * 324.85937 * 17 15 14 37 37 H 1.09000 * 109.88923 * 262.77875 * 18 17 15 38 38 H 1.09009 * 110.00990 * 141.68564 * 18 17 15 39 39 H 1.08003 * 126.80923 * 359.97438 * 23 22 20 40 40 H 1.08999 * 110.36600 * 94.48271 * 28 19 18 41 41 H 1.08994 * 110.36085 * 216.80189 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5730 -3.2326 0.0026 12 8 6.3440 -2.2964 0.0014 13 7 6.0457 -4.4948 0.0030 14 6 7.4906 -4.7359 0.0026 15 6 7.7563 -6.2426 0.0025 16 1 7.1946 -6.7363 0.7954 17 6 9.2740 -6.5397 0.1282 18 6 9.4139 -7.9177 -0.5524 19 7 8.2613 -8.0800 -1.4506 20 6 8.0063 -9.1611 -2.2138 21 8 7.0183 -9.1858 -2.9226 22 6 8.9270 -10.3099 -2.1941 23 6 8.8121 -11.4756 -2.9047 24 7 9.8679 -12.2209 -2.5772 25 7 10.5897 -11.5882 -1.7228 26 7 10.0748 -10.4389 -1.4566 27 1 10.4357 -9.7803 -0.8427 28 6 7.4341 -6.8615 -1.3830 29 1 -0.4850 0.8400 -0.0004 30 1 3.6440 -3.4322 -0.8874 31 1 3.6433 -3.4311 0.8926 32 1 5.4290 -5.2435 0.0029 33 1 7.9340 -4.2884 0.8922 34 1 7.9332 -4.2892 -0.8878 35 1 9.5706 -6.5951 1.1756 36 1 9.8619 -5.7880 -0.3984 37 1 9.4106 -8.7054 0.2009 38 1 10.3398 -7.9578 -1.1265 39 1 8.0239 -11.7377 -3.5950 40 1 7.7080 -6.1723 -2.1818 41 1 6.3765 -7.1170 -1.4473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284371096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:54 Heat of formation + Delta-G solvation = 33.624432 kcal Electronic energy + Delta-G solvation = -25586.481351 eV Core-core repulsion = 21630.242157 eV Total energy + Delta-G solvation = -3956.239193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.98512 -40.77971 -39.42225 -38.26205 -35.26460 -34.15907 -32.65294 -32.46749 -31.77475 -30.43391 -29.21090 -26.68547 -25.65133 -24.88443 -23.41102 -23.26399 -21.59176 -21.12755 -20.55824 -18.78972 -17.96676 -17.65520 -17.27257 -16.90400 -16.43669 -16.35837 -15.78637 -15.66184 -15.00699 -14.98253 -14.87086 -14.50460 -13.96838 -13.89356 -13.57391 -13.37206 -13.20105 -12.84722 -12.82321 -12.76424 -12.21681 -12.09542 -11.84932 -11.59613 -11.49715 -11.34942 -11.30083 -11.03936 -10.86870 -10.64863 -10.16338 -9.89604 -9.64347 -9.50306 -9.15168 -9.02806 -8.54967 -6.96175 -6.31851 -4.04232 0.25252 1.69630 1.73116 2.09011 2.41020 2.67804 2.86653 3.18540 3.30464 3.41730 3.47028 3.57056 3.61757 3.78701 4.00290 4.06246 4.24003 4.29859 4.33598 4.43957 4.53875 4.56760 4.68866 4.73434 5.00497 5.07110 5.08107 5.17305 5.20608 5.24150 5.35542 5.43713 5.46701 5.65399 5.71036 5.91660 5.95810 6.35481 6.55478 7.24219 7.45237 7.65144 7.91080 8.36588 8.38886 9.14079 10.77334 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030562 B = 0.001773 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.946946 B =15785.980422 C =16477.619024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.739 5.739 14 C 0.133 3.867 15 C -0.114 4.114 16 H 0.098 0.902 17 C -0.119 4.119 18 C 0.080 3.920 19 N -0.616 5.616 20 C 0.610 3.390 21 O -0.505 6.505 22 C -0.065 4.065 23 C 0.037 3.963 24 N -0.268 5.268 25 N -0.047 5.047 26 N -0.379 5.379 27 H 0.449 0.551 28 C 0.110 3.890 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.400 0.600 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.207 0.793 40 H 0.082 0.918 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.323 -20.741 0.280 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.394 5.394 14 C 0.009 3.991 15 C -0.133 4.133 16 H 0.116 0.884 17 C -0.157 4.157 18 C -0.043 4.043 19 N -0.351 5.351 20 C 0.396 3.604 21 O -0.378 6.378 22 C -0.199 4.199 23 C -0.123 4.123 24 N -0.133 5.133 25 N -0.029 5.029 26 N -0.111 5.111 27 H 0.301 0.699 28 C -0.011 4.011 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.234 0.766 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.224 0.776 40 H 0.100 0.900 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 23.980 -20.195 0.030 31.351 hybrid contribution -1.654 0.412 0.221 1.718 sum 22.326 -19.783 0.252 29.831 Atomic orbital electron populations 1.69935 1.05912 1.27796 1.47930 1.24720 0.94456 0.98972 0.93167 0.86732 0.81858 0.83294 0.79939 1.19200 1.19920 1.15957 1.22310 0.88202 0.97561 1.58923 0.89352 1.84784 1.09397 0.99938 1.97442 1.23286 0.93875 1.04512 1.05910 1.20291 0.90665 0.82151 0.75069 1.90706 1.58792 1.42184 1.47572 1.45969 1.07169 1.08262 1.78039 1.21187 0.82203 0.92573 1.03165 1.22707 0.96824 0.96278 0.97506 0.88358 1.22608 0.96041 0.94832 1.02264 1.22343 0.89233 0.99779 0.92963 1.48349 1.26503 1.16861 1.43381 1.16348 0.84222 0.79833 0.79986 1.90928 1.27019 1.79838 1.39975 1.22292 0.93086 1.00823 1.03691 1.23988 0.98597 0.89165 1.00505 1.75037 1.03862 1.25117 1.09242 1.78237 1.20162 0.92009 1.12496 1.46213 1.17251 1.15752 1.31846 0.69949 1.22537 0.96660 0.84689 0.97245 0.91911 0.88394 0.88401 0.76556 0.90648 0.90972 0.88665 0.89073 0.90998 0.90851 0.77647 0.89980 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.24 13.97 55.49 0.78 -25.46 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.44 27.74 -169.99 -4.72 16.73 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 7 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 10 C -0.13 -2.28 6.16 36.01 0.22 -2.06 16 11 C 0.53 8.52 7.85 -10.99 -0.09 8.43 16 12 O -0.52 -10.32 15.86 5.56 0.09 -10.24 16 13 N -0.74 -7.57 5.50 -60.30 -0.33 -7.91 16 14 C 0.13 1.01 5.13 -4.05 -0.02 0.99 16 15 C -0.11 -0.48 3.06 -88.35 -0.27 -0.76 16 16 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 17 C -0.12 -0.24 6.41 -24.90 -0.16 -0.40 16 18 C 0.08 0.17 5.14 -3.06 -0.02 0.15 16 19 N -0.62 -3.47 3.33 -171.71 -0.57 -4.05 16 20 C 0.61 4.97 7.84 -12.61 -0.10 4.87 16 21 O -0.51 -5.93 17.18 5.26 0.09 -5.84 16 22 C -0.06 -0.46 6.98 -82.33 -0.57 -1.03 16 23 C 0.04 0.29 11.87 -17.35 -0.21 0.08 16 24 N -0.27 -2.49 12.35 30.47 0.38 -2.12 16 25 N -0.05 -0.38 13.35 60.35 0.81 0.43 16 26 N -0.38 -2.01 6.60 33.31 0.22 -1.79 16 27 H 0.45 0.84 5.14 -190.33 -0.98 -0.14 16 28 C 0.11 0.65 6.33 -2.41 -0.02 0.64 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 31 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 32 H 0.40 3.09 8.47 -40.82 -0.35 2.75 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.61 7.96 -51.93 -0.41 0.19 16 35 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.09 0.17 8.04 -51.93 -0.42 -0.24 16 37 H 0.07 0.04 7.14 -51.93 -0.37 -0.33 16 38 H 0.07 0.05 7.26 -51.92 -0.38 -0.33 16 39 H 0.21 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.08 0.53 7.91 -51.93 -0.41 0.12 16 41 H 0.09 0.62 8.03 -51.93 -0.42 0.21 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -37.80 362.75 -6.64 -44.44 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.84 Total: -3.29 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.01 Total: -0.89 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 1.27 Total: -40.90 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.18 Total: -16.08 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.72 Total: 16.73 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.80 -6.64 -44.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284371096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.068 kcal (2) G-P(sol) polarization free energy of solvation -37.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds