Wall clock time and date at job start Tue Mar 31 2020 22:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 120.00222 * 2 1 4 4 H 1.48493 * 109.46854 * 269.99740 * 3 2 1 5 5 H 1.48506 * 109.46758 * 29.99655 * 3 2 1 6 6 H 1.48496 * 109.46951 * 149.99596 * 3 2 1 7 7 C 1.38806 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99947 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99761 * 180.02562 * 7 2 1 10 10 C 1.81010 * 99.99660 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46775 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00165 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99722 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00088 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47367 * 180.02562 * 14 13 11 16 16 H 1.08994 * 110.89041 * 308.88051 * 15 14 13 17 17 C 1.55156 * 111.00511 * 184.99733 * 15 14 13 18 18 C 1.54324 * 102.94272 * 206.42089 * 17 15 14 19 19 N 1.47027 * 107.27233 * 22.19672 * 18 17 15 20 20 C 1.34773 * 125.64926 * 181.01722 * 19 18 17 21 21 O 1.21623 * 119.99874 * 180.02562 * 20 19 18 22 22 C 1.47229 * 120.00212 * 359.75360 * 20 19 18 23 23 C 1.37006 * 127.19159 * 179.97438 * 22 20 19 24 24 N 1.33320 * 106.37129 * 179.84595 * 23 22 20 25 25 N 1.28507 * 109.43975 * 0.42907 * 24 23 22 26 26 N 1.28716 * 110.64063 * 359.72254 * 25 24 23 27 27 H 0.96996 * 126.03772 * 180.02562 * 26 25 24 28 28 C 1.47430 * 108.69819 * 1.28428 * 19 18 17 29 29 H 0.96996 * 120.00117 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46662 * 60.00159 * 10 9 7 31 31 H 1.08995 * 109.47178 * 300.00419 * 10 9 7 32 32 H 0.97001 * 119.99877 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47466 * 59.99983 * 14 13 11 34 34 H 1.09007 * 109.47062 * 299.99987 * 14 13 11 35 35 H 1.09003 * 110.71620 * 88.06202 * 17 15 14 36 36 H 1.08998 * 110.87852 * 324.85937 * 17 15 14 37 37 H 1.09000 * 109.88923 * 262.77875 * 18 17 15 38 38 H 1.09009 * 110.00990 * 141.68564 * 18 17 15 39 39 H 1.08003 * 126.80923 * 359.97438 * 23 22 20 40 40 H 1.08999 * 110.36600 * 94.48271 * 28 19 18 41 41 H 1.08994 * 110.36085 * 216.80189 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5730 -3.2326 0.0026 12 8 6.3440 -2.2964 0.0014 13 7 6.0457 -4.4948 0.0030 14 6 7.4906 -4.7359 0.0026 15 6 7.7563 -6.2426 0.0025 16 1 7.1946 -6.7363 0.7954 17 6 9.2740 -6.5397 0.1282 18 6 9.4139 -7.9177 -0.5524 19 7 8.2613 -8.0800 -1.4506 20 6 8.0063 -9.1611 -2.2138 21 8 7.0183 -9.1858 -2.9226 22 6 8.9270 -10.3099 -2.1941 23 6 8.8121 -11.4756 -2.9047 24 7 9.8679 -12.2209 -2.5772 25 7 10.5897 -11.5882 -1.7228 26 7 10.0748 -10.4389 -1.4566 27 1 10.4357 -9.7803 -0.8427 28 6 7.4341 -6.8615 -1.3830 29 1 -0.4850 0.8400 -0.0004 30 1 3.6440 -3.4322 -0.8874 31 1 3.6433 -3.4311 0.8926 32 1 5.4290 -5.2435 0.0029 33 1 7.9340 -4.2884 0.8922 34 1 7.9332 -4.2892 -0.8878 35 1 9.5706 -6.5951 1.1756 36 1 9.8619 -5.7880 -0.3984 37 1 9.4106 -8.7054 0.2009 38 1 10.3398 -7.9578 -1.1265 39 1 8.0239 -11.7377 -3.5950 40 1 7.7080 -6.1723 -2.1818 41 1 6.3765 -7.1170 -1.4473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284371096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:53 Heat of formation + Delta-G solvation = 3.185499 kcal Electronic energy + Delta-G solvation = -25587.801282 eV Core-core repulsion = 21630.242157 eV Total energy + Delta-G solvation = -3957.559124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.54316 -41.32350 -40.54955 -38.90013 -36.10820 -34.80464 -34.66734 -33.33409 -32.37269 -31.24320 -30.05242 -27.89315 -27.31639 -25.49388 -23.99108 -23.67822 -22.14092 -21.74097 -21.53055 -19.89475 -19.23590 -18.15424 -18.01394 -17.67024 -17.50728 -17.17994 -17.01982 -16.67427 -16.50481 -15.79255 -15.60675 -15.43120 -14.95813 -14.93510 -14.69622 -14.33207 -14.13563 -13.89102 -13.43596 -13.36158 -13.34048 -13.10701 -12.99002 -12.78881 -12.55452 -12.33981 -12.08211 -11.94255 -11.85713 -11.74359 -11.52835 -11.16933 -10.99425 -10.75958 -10.53404 -10.12549 -9.96233 -8.98844 -8.51235 -6.22003 -0.30626 1.00242 1.09287 1.24370 1.32005 1.47096 1.56733 1.58112 1.65848 1.82622 2.22982 2.27049 2.71853 2.87050 2.97565 3.28440 3.34340 3.56796 3.72654 3.81264 3.89650 3.98474 4.02615 4.16025 4.23786 4.26402 4.38233 4.49203 4.59910 4.71883 4.75227 4.81556 4.87994 4.92164 5.09230 5.23320 5.43095 5.54730 5.70767 6.07221 6.11807 6.45381 6.66813 6.93859 7.07665 7.19905 8.61118 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030562 B = 0.001773 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.946946 B =15785.980422 C =16477.619024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.235 1.235 7 C -0.530 4.530 8 H 0.061 0.939 9 S -0.175 6.175 10 C -0.115 4.115 11 C 0.537 3.463 12 O -0.561 6.561 13 N -0.714 5.714 14 C 0.132 3.868 15 C -0.099 4.099 16 H 0.111 0.889 17 C -0.111 4.111 18 C 0.070 3.930 19 N -0.610 5.610 20 C 0.610 3.390 21 O -0.551 6.551 22 C -0.061 4.061 23 C 0.029 3.971 24 N -0.295 5.295 25 N -0.058 5.058 26 N -0.353 5.353 27 H 0.464 0.536 28 C 0.105 3.895 29 H 0.277 0.723 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.415 0.585 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.217 0.783 40 H 0.075 0.925 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.737 -21.311 1.370 32.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.159 1.159 7 C -0.678 4.678 8 H 0.079 0.921 9 S 0.052 5.948 10 C -0.266 4.266 11 C 0.322 3.678 12 O -0.440 6.440 13 N -0.368 5.368 14 C 0.008 3.992 15 C -0.119 4.119 16 H 0.129 0.871 17 C -0.149 4.149 18 C -0.052 4.052 19 N -0.343 5.343 20 C 0.396 3.604 21 O -0.427 6.427 22 C -0.196 4.196 23 C -0.131 4.131 24 N -0.159 5.159 25 N -0.040 5.040 26 N -0.088 5.088 27 H 0.319 0.681 28 C -0.017 4.017 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.252 0.748 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.234 0.766 40 H 0.093 0.907 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 26.438 -20.807 1.165 33.664 hybrid contribution -2.359 0.450 -0.104 2.404 sum 24.079 -20.357 1.061 31.549 Atomic orbital electron populations 1.70019 1.07359 1.29017 1.49139 1.25596 0.95285 1.02345 0.92901 0.85848 0.80715 0.79502 0.80181 1.18779 1.18425 1.15862 1.22478 0.90408 0.96642 1.58248 0.92054 1.84667 1.06247 1.06336 1.97587 1.23300 0.96370 0.99502 1.07380 1.19849 0.89161 0.83485 0.75272 1.90695 1.59208 1.43850 1.50202 1.45772 1.09026 1.06639 1.75397 1.21378 0.79846 0.94931 1.03024 1.22581 0.99044 0.93555 0.96675 0.87070 1.22650 0.93856 0.94603 1.03833 1.22693 0.88591 1.00747 0.93199 1.48377 1.27249 1.15856 1.42844 1.16420 0.83747 0.80396 0.79792 1.90906 1.28903 1.80797 1.42086 1.22102 0.93345 1.00294 1.03892 1.24280 0.98620 0.89401 1.00825 1.75025 1.04644 1.26082 1.10183 1.78176 1.20351 0.92796 1.12658 1.46161 1.16254 1.15277 1.31122 0.68089 1.22552 0.96172 0.84811 0.98177 0.91400 0.87111 0.86818 0.74790 0.90384 0.91557 0.86287 0.88655 0.88685 0.88847 0.76620 0.90693 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.52 13.97 21.65 0.30 -55.21 16 2 C 0.04 2.56 5.50 84.86 0.47 3.03 16 3 Si 0.92 44.39 27.74 68.60 1.90 46.29 16 4 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.23 -11.27 6.74 99.48 0.67 -10.60 16 7 C -0.53 -30.46 10.04 67.96 0.68 -29.77 16 8 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 9 S -0.17 -8.58 18.55 -56.49 -1.05 -9.62 16 10 C -0.11 -4.05 6.16 71.24 0.44 -3.61 16 11 C 0.54 16.39 7.85 87.66 0.69 17.08 16 12 O -0.56 -21.83 15.86 -3.02 -0.05 -21.88 16 13 N -0.71 -13.01 5.50 -463.07 -2.55 -15.56 16 14 C 0.13 1.65 5.13 86.38 0.44 2.10 16 15 C -0.10 -0.52 3.06 -9.33 -0.03 -0.55 16 16 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 17 C -0.11 0.02 6.41 31.78 0.20 0.22 16 18 C 0.07 0.02 5.14 86.73 0.45 0.47 16 19 N -0.61 -5.49 3.33 -815.42 -2.71 -8.20 16 20 C 0.61 9.21 7.84 86.61 0.68 9.89 16 21 O -0.55 -12.93 17.18 -4.10 -0.07 -13.00 16 22 C -0.06 -0.78 6.98 40.41 0.28 -0.49 16 23 C 0.03 0.43 11.87 84.18 1.00 1.43 16 24 N -0.30 -5.28 12.35 -57.50 -0.71 -5.99 16 25 N -0.06 -0.85 13.35 37.02 0.49 -0.35 16 26 N -0.35 -2.92 6.60 -48.52 -0.32 -3.24 16 27 H 0.46 0.16 5.14 -219.90 -1.13 -0.97 16 28 C 0.10 1.04 6.33 86.93 0.55 1.59 16 29 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 31 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 32 H 0.42 5.31 8.47 -92.71 -0.79 4.53 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 0.98 7.96 -2.38 -0.02 0.96 16 35 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.09 -0.02 8.04 -2.39 -0.02 -0.04 16 37 H 0.10 -0.34 7.14 -2.39 -0.02 -0.36 16 38 H 0.09 -0.27 7.26 -2.38 -0.02 -0.29 16 39 H 0.22 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.07 0.88 7.91 -2.39 -0.02 0.86 16 41 H 0.08 0.98 8.03 -2.39 -0.02 0.97 16 Total: -1.00 -84.43 362.75 0.24 -84.19 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -0.86 Total: 1.22 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.85 Total: 1.37 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -5.49 Total: -88.56 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.12 Total: -34.89 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.90 Total: 46.29 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.05 Total: -9.62 kcal Total: -84.43 0.24 -84.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284371096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.376 kcal (2) G-P(sol) polarization free energy of solvation -84.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds