Wall clock time and date at job start Tue Mar 31 2020 22:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48507 * 109.47259 * 270.00150 * 3 2 1 5 5 H 1.48505 * 109.47352 * 30.00157 * 3 2 1 6 6 H 1.48500 * 109.47072 * 150.00253 * 3 2 1 7 7 C 1.38794 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99758 * 179.97438 * 7 2 1 9 9 S 1.76192 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00330 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47417 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99782 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99847 * 179.97438 * 11 10 9 14 14 C 1.46510 * 119.99794 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46866 * 179.97438 * 14 13 11 16 16 H 1.09001 * 110.91426 * 57.45329 * 15 14 13 17 17 C 1.55282 * 111.09626 * 181.35720 * 15 14 13 18 18 C 1.54322 * 103.00430 * 153.45081 * 17 15 14 19 19 N 1.47023 * 107.27149 * 337.88615 * 18 17 15 20 20 C 1.34780 * 125.64409 * 178.95789 * 19 18 17 21 21 O 1.21565 * 119.99404 * 179.97438 * 20 19 18 22 22 C 1.47868 * 120.00659 * 359.97438 * 20 19 18 23 23 N 1.34553 * 126.04107 * 359.68435 * 22 20 19 24 24 C 1.30878 * 107.26407 * 179.86882 * 23 22 20 25 25 N 1.34582 * 107.62396 * 0.39308 * 24 23 22 26 26 H 0.97003 * 125.74645 * 179.72569 * 25 24 23 27 27 N 1.28845 * 108.50541 * 359.75226 * 25 24 23 28 28 C 1.47419 * 108.70585 * 358.94325 * 19 18 17 29 29 H 0.97001 * 119.99738 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47147 * 59.99865 * 10 9 7 31 31 H 1.08999 * 109.47115 * 299.99674 * 10 9 7 32 32 H 0.96993 * 120.00663 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.46498 * 60.00234 * 14 13 11 34 34 H 1.08999 * 109.46931 * 300.00130 * 14 13 11 35 35 H 1.09006 * 110.61769 * 35.10160 * 17 15 14 36 36 H 1.08997 * 110.91483 * 271.93842 * 17 15 14 37 37 H 1.09009 * 109.88484 * 218.47198 * 18 17 15 38 38 H 1.09003 * 110.01148 * 97.38135 * 18 17 15 39 39 H 1.07998 * 126.18568 * 180.12171 * 24 23 22 40 40 H 1.09002 * 110.36926 * 142.96521 * 28 19 18 41 41 H 1.08995 * 110.36556 * 265.17805 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5157 -3.8914 -0.0029 11 6 1.9873 -5.3027 -0.0036 12 8 0.7910 -5.5023 -0.0038 13 7 2.8440 -6.3431 -0.0049 14 6 2.3302 -7.7151 -0.0061 15 6 3.5023 -8.6985 -0.0081 16 1 4.1532 -8.5300 0.8498 17 6 2.9995 -10.1673 -0.0437 18 6 4.1693 -10.9186 -0.7136 19 7 4.9434 -9.9291 -1.4773 20 6 6.0583 -10.1845 -2.1902 21 8 6.6184 -9.2847 -2.7856 22 6 6.6003 -11.5591 -2.2481 23 7 6.0848 -12.6398 -1.6344 24 6 6.8493 -13.6587 -1.9349 25 7 7.8397 -13.2058 -2.7256 26 1 8.5573 -13.7416 -3.0983 27 7 7.6745 -11.9405 -2.9038 28 6 4.2980 -8.6114 -1.3343 29 1 -0.4850 0.8401 0.0004 30 1 3.1244 -3.7321 0.8872 31 1 3.1243 -3.7306 -0.8928 32 1 3.8007 -6.1835 -0.0051 33 1 1.7213 -7.8742 -0.8961 34 1 1.7219 -7.8760 0.8839 35 1 2.0941 -10.2485 -0.6452 36 1 2.8263 -10.5438 0.9643 37 1 3.7817 -11.6846 -1.3854 38 1 4.8016 -11.3778 0.0463 39 1 6.7127 -14.6778 -1.6043 40 1 5.0504 -7.8250 -1.2744 41 1 3.6232 -8.4269 -2.1702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284376826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:31 Heat of formation + Delta-G solvation = 23.762148 kcal Electronic energy + Delta-G solvation = -25507.193045 eV Core-core repulsion = 21550.526191 eV Total energy + Delta-G solvation = -3956.666854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.01038 -40.35191 -39.12663 -37.82390 -34.85035 -34.04606 -32.39685 -32.17947 -31.83467 -29.96121 -28.89637 -26.65296 -25.44863 -24.30917 -23.48646 -22.90951 -20.88834 -20.37376 -20.07091 -19.11172 -17.83441 -17.39072 -17.01995 -16.74060 -16.25532 -16.11134 -15.51097 -15.38949 -15.14064 -14.77109 -14.58665 -13.99591 -13.89237 -13.42245 -13.15358 -13.06630 -12.91569 -12.72756 -12.55219 -12.34021 -11.77210 -11.66338 -11.31212 -11.29191 -11.03857 -11.02205 -10.99059 -10.97730 -10.72578 -10.58881 -10.30194 -9.78319 -9.38037 -9.03873 -8.99745 -8.87731 -8.20221 -6.46411 -6.18496 -3.88713 0.87875 1.56043 1.92935 2.54294 2.93745 3.05063 3.13016 3.25418 3.30612 3.34694 3.49212 3.71635 3.97500 4.17623 4.19267 4.23838 4.33754 4.48839 4.92863 4.97529 5.00041 5.16740 5.22802 5.28583 5.35543 5.50204 5.54224 5.55422 5.61555 5.65329 5.66608 5.81984 5.87964 5.93908 5.99240 6.13549 6.18942 6.61471 7.01173 7.36585 7.63133 7.71598 7.75509 8.38729 8.63540 9.27018 10.88940 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.001778 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.304740 B =15741.433535 C =16698.154713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.741 5.741 14 C 0.134 3.866 15 C -0.113 4.113 16 H 0.094 0.906 17 C -0.126 4.126 18 C 0.112 3.888 19 N -0.601 5.601 20 C 0.627 3.373 21 O -0.515 6.515 22 C 0.152 3.848 23 N -0.481 5.481 24 C 0.197 3.803 25 N -0.400 5.400 26 H 0.453 0.547 27 N -0.248 5.248 28 C 0.112 3.888 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.231 0.769 40 H 0.084 0.916 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.795 -33.350 -1.265 36.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.396 5.396 14 C 0.009 3.991 15 C -0.133 4.133 16 H 0.113 0.887 17 C -0.164 4.164 18 C -0.010 4.010 19 N -0.335 5.335 20 C 0.410 3.590 21 O -0.387 6.387 22 C -0.128 4.128 23 N -0.208 5.208 24 C -0.100 4.100 25 N -0.123 5.123 26 H 0.300 0.700 27 N -0.087 5.087 28 C -0.010 4.010 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.247 0.753 40 H 0.103 0.897 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.973 -32.547 -1.747 35.081 hybrid contribution 2.966 0.467 -0.169 3.007 sum 15.939 -32.080 -1.917 35.872 Atomic orbital electron populations 1.70021 1.05938 1.27411 1.46955 1.24988 0.95027 0.99014 0.94560 0.86171 0.79413 0.81579 0.78351 1.20279 1.20773 1.19699 1.22876 0.94939 0.91673 1.58840 0.90909 1.85370 1.04979 0.96332 1.96719 1.23540 1.06565 0.95390 1.05003 1.20294 0.86484 0.86278 0.75047 1.90703 1.15360 1.85625 1.47506 1.46019 1.10021 1.05437 1.78087 1.21195 0.94682 0.80214 1.02988 1.22662 0.97298 0.95407 0.97931 0.88731 1.22729 0.98042 0.93447 1.02208 1.22125 0.92433 0.90965 0.95485 1.48061 1.25211 1.11213 1.49010 1.15819 0.79660 0.84035 0.79443 1.90882 1.58867 1.44643 1.44309 1.23679 0.93589 0.95821 0.99735 1.71431 1.28022 0.97867 1.23439 1.26694 0.87266 1.01458 0.94631 1.45289 1.24008 1.06186 1.36811 0.69969 1.74397 1.18683 0.94698 1.20936 1.22415 0.96550 0.84533 0.97537 0.92216 0.89203 0.89141 0.76764 0.91117 0.90804 0.89841 0.89268 0.90449 0.90350 0.75296 0.89741 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 C 0.53 9.82 7.85 -10.99 -0.09 9.74 16 12 O -0.52 -11.64 15.86 5.56 0.09 -11.55 16 13 N -0.74 -9.47 5.41 -60.29 -0.33 -9.79 16 14 C 0.13 1.39 5.13 -4.04 -0.02 1.37 16 15 C -0.11 -0.85 3.11 -88.41 -0.27 -1.13 16 16 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 17 C -0.13 -0.74 6.43 -24.83 -0.16 -0.90 16 18 C 0.11 0.79 5.53 -3.06 -0.02 0.78 16 19 N -0.60 -5.93 3.33 -171.62 -0.57 -6.50 16 20 C 0.63 7.81 7.86 -12.32 -0.10 7.71 16 21 O -0.51 -8.24 17.34 5.31 0.09 -8.14 16 22 C 0.15 1.59 7.80 -156.36 -1.22 0.37 16 23 N -0.48 -3.55 8.86 -12.36 -0.11 -3.66 16 24 C 0.20 0.63 13.14 -90.48 -1.19 -0.56 16 25 N -0.40 -1.56 6.93 29.57 0.20 -1.36 16 26 H 0.45 -0.21 8.96 -190.21 -1.71 -1.92 16 27 N -0.25 -2.35 12.30 32.07 0.39 -1.96 16 28 C 0.11 1.04 6.08 -2.53 -0.02 1.02 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 31 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 32 H 0.40 4.08 8.34 -40.82 -0.34 3.74 16 33 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.54 7.75 -51.92 -0.40 0.14 16 38 H 0.08 0.54 7.61 -51.93 -0.40 0.14 16 39 H 0.23 -0.50 8.06 -52.49 -0.42 -0.92 16 40 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.08 0.78 8.00 -51.93 -0.42 0.36 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -41.11 368.50 -10.43 -51.54 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -6.59 Total: -3.66 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.66 Total: 2.39 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.33 Total: -48.92 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.18 Total: -19.69 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -41.11 -10.43 -51.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284376826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.303 kcal (2) G-P(sol) polarization free energy of solvation -41.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds