Wall clock time and date at job start Tue Mar 31 2020 22:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48507 * 109.47259 * 270.00150 * 3 2 1 5 5 H 1.48505 * 109.47352 * 30.00157 * 3 2 1 6 6 H 1.48500 * 109.47072 * 150.00253 * 3 2 1 7 7 C 1.38794 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99758 * 179.97438 * 7 2 1 9 9 S 1.76192 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00330 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47417 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99782 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99847 * 179.97438 * 11 10 9 14 14 C 1.46510 * 119.99794 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46866 * 179.97438 * 14 13 11 16 16 H 1.09001 * 110.91426 * 57.45329 * 15 14 13 17 17 C 1.55282 * 111.09626 * 181.35720 * 15 14 13 18 18 C 1.54322 * 103.00430 * 153.45081 * 17 15 14 19 19 N 1.47023 * 107.27149 * 337.88615 * 18 17 15 20 20 C 1.34780 * 125.64409 * 178.95789 * 19 18 17 21 21 O 1.21565 * 119.99404 * 179.97438 * 20 19 18 22 22 C 1.47868 * 120.00659 * 359.97438 * 20 19 18 23 23 N 1.34553 * 126.04107 * 359.68435 * 22 20 19 24 24 C 1.30878 * 107.26407 * 179.86882 * 23 22 20 25 25 N 1.34582 * 107.62396 * 0.39308 * 24 23 22 26 26 H 0.97003 * 125.74645 * 179.72569 * 25 24 23 27 27 N 1.28845 * 108.50541 * 359.75226 * 25 24 23 28 28 C 1.47419 * 108.70585 * 358.94325 * 19 18 17 29 29 H 0.97001 * 119.99738 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47147 * 59.99865 * 10 9 7 31 31 H 1.08999 * 109.47115 * 299.99674 * 10 9 7 32 32 H 0.96993 * 120.00663 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.46498 * 60.00234 * 14 13 11 34 34 H 1.08999 * 109.46931 * 300.00130 * 14 13 11 35 35 H 1.09006 * 110.61769 * 35.10160 * 17 15 14 36 36 H 1.08997 * 110.91483 * 271.93842 * 17 15 14 37 37 H 1.09009 * 109.88484 * 218.47198 * 18 17 15 38 38 H 1.09003 * 110.01148 * 97.38135 * 18 17 15 39 39 H 1.07998 * 126.18568 * 180.12171 * 24 23 22 40 40 H 1.09002 * 110.36926 * 142.96521 * 28 19 18 41 41 H 1.08995 * 110.36556 * 265.17805 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5157 -3.8914 -0.0029 11 6 1.9873 -5.3027 -0.0036 12 8 0.7910 -5.5023 -0.0038 13 7 2.8440 -6.3431 -0.0049 14 6 2.3302 -7.7151 -0.0061 15 6 3.5023 -8.6985 -0.0081 16 1 4.1532 -8.5300 0.8498 17 6 2.9995 -10.1673 -0.0437 18 6 4.1693 -10.9186 -0.7136 19 7 4.9434 -9.9291 -1.4773 20 6 6.0583 -10.1845 -2.1902 21 8 6.6184 -9.2847 -2.7856 22 6 6.6003 -11.5591 -2.2481 23 7 6.0848 -12.6398 -1.6344 24 6 6.8493 -13.6587 -1.9349 25 7 7.8397 -13.2058 -2.7256 26 1 8.5573 -13.7416 -3.0983 27 7 7.6745 -11.9405 -2.9038 28 6 4.2980 -8.6114 -1.3343 29 1 -0.4850 0.8401 0.0004 30 1 3.1244 -3.7321 0.8872 31 1 3.1243 -3.7306 -0.8928 32 1 3.8007 -6.1835 -0.0051 33 1 1.7213 -7.8742 -0.8961 34 1 1.7219 -7.8760 0.8839 35 1 2.0941 -10.2485 -0.6452 36 1 2.8263 -10.5438 0.9643 37 1 3.7817 -11.6846 -1.3854 38 1 4.8016 -11.3778 0.0463 39 1 6.7127 -14.6778 -1.6043 40 1 5.0504 -7.8250 -1.2744 41 1 3.6232 -8.4269 -2.1702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284376826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:30 Heat of formation + Delta-G solvation = -7.685428 kcal Electronic energy + Delta-G solvation = -25508.556715 eV Core-core repulsion = 21550.526191 eV Total energy + Delta-G solvation = -3958.030523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.47718 -41.19270 -40.46293 -38.74347 -35.94642 -34.61811 -34.57245 -33.07590 -32.38933 -31.10567 -29.90570 -27.79197 -27.40322 -25.11476 -23.88109 -23.54696 -21.82677 -21.44838 -20.75302 -19.84897 -19.58028 -18.09325 -17.92504 -17.56262 -17.38654 -17.08663 -16.87172 -16.66002 -16.39205 -15.79183 -15.69090 -15.49916 -14.80654 -14.62614 -14.46032 -14.14965 -13.90417 -13.81569 -13.39322 -13.19372 -13.15548 -12.94250 -12.86944 -12.64090 -12.31876 -12.04805 -11.79392 -11.71683 -11.59895 -11.56260 -11.44322 -11.13742 -10.91736 -10.84052 -10.26743 -10.08779 -9.77329 -8.65029 -8.34013 -6.11534 0.24753 1.14726 1.28151 1.40009 1.42561 1.47625 1.58479 1.64612 2.12084 2.17255 2.26695 2.32141 2.96494 2.99997 3.32205 3.42311 3.53896 3.61570 3.81272 4.01253 4.03963 4.27956 4.32177 4.37312 4.39232 4.53870 4.57340 4.73526 4.81466 4.86160 4.91442 5.02576 5.07872 5.22914 5.26259 5.36523 5.42766 5.46833 5.94023 6.20673 6.25621 6.50805 6.76397 7.05198 7.07438 7.26256 8.75184 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.001778 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.304740 B =15741.433535 C =16698.154713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.081 0.919 9 S -0.149 6.149 10 C -0.133 4.133 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.716 5.716 14 C 0.134 3.866 15 C -0.096 4.096 16 H 0.109 0.891 17 C -0.117 4.117 18 C 0.115 3.885 19 N -0.597 5.597 20 C 0.617 3.383 21 O -0.568 6.568 22 C 0.126 3.874 23 N -0.500 5.500 24 C 0.222 3.778 25 N -0.384 5.384 26 H 0.472 0.528 27 N -0.284 5.284 28 C 0.105 3.895 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.414 0.586 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.287 0.713 40 H 0.075 0.925 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.631 -35.709 -0.291 39.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.696 4.696 8 H 0.099 0.901 9 S 0.078 5.922 10 C -0.284 4.284 11 C 0.321 3.679 12 O -0.442 6.442 13 N -0.369 5.369 14 C 0.010 3.990 15 C -0.116 4.116 16 H 0.127 0.873 17 C -0.155 4.155 18 C -0.006 4.006 19 N -0.329 5.329 20 C 0.402 3.598 21 O -0.445 6.445 22 C -0.153 4.153 23 N -0.227 5.227 24 C -0.075 4.075 25 N -0.109 5.109 26 H 0.323 0.677 27 N -0.125 5.125 28 C -0.017 4.017 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.302 0.698 40 H 0.093 0.907 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.852 -34.988 -0.760 38.017 hybrid contribution 2.464 0.948 -0.487 2.684 sum 17.316 -34.040 -1.246 38.212 Atomic orbital electron populations 1.70181 1.07901 1.28584 1.48003 1.26109 0.95978 1.03251 0.93763 0.84967 0.78215 0.76132 0.78745 1.19435 1.20145 1.18288 1.23213 0.95339 0.92151 1.58849 0.90051 1.85510 1.10500 0.99107 1.97039 1.23401 1.03581 0.94720 1.06699 1.19970 0.86215 0.86571 0.75126 1.90691 1.17273 1.86083 1.50177 1.45798 1.10224 1.05373 1.75551 1.21351 0.95821 0.78954 1.02855 1.22525 0.96032 0.95775 0.97223 0.87292 1.22762 0.97533 0.91606 1.03596 1.22255 0.92460 0.90541 0.95369 1.48165 1.24580 1.11958 1.48237 1.16252 0.79858 0.84691 0.78993 1.90828 1.60587 1.46408 1.46651 1.23329 0.94655 0.95709 1.01638 1.71381 1.29269 0.97883 1.24176 1.27736 0.85157 1.02469 0.92121 1.45278 1.24610 1.04713 1.36319 0.67749 1.74286 1.19066 0.97352 1.21834 1.22457 0.96357 0.84492 0.98361 0.91984 0.87212 0.87528 0.74945 0.91772 0.90465 0.89425 0.86823 0.90158 0.89606 0.69791 0.90692 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 44.37 29.55 68.60 2.03 46.40 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.55 -31.79 9.50 67.95 0.65 -31.14 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 10 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 11 C 0.54 19.54 7.85 87.66 0.69 20.23 16 12 O -0.56 -25.76 15.86 -3.03 -0.05 -25.80 16 13 N -0.72 -17.31 5.41 -463.04 -2.50 -19.81 16 14 C 0.13 2.57 5.13 86.38 0.44 3.01 16 15 C -0.10 -1.25 3.11 -9.36 -0.03 -1.28 16 16 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 17 C -0.12 -1.06 6.43 31.83 0.20 -0.85 16 18 C 0.12 1.41 5.53 86.73 0.48 1.89 16 19 N -0.60 -11.57 3.33 -815.16 -2.71 -14.29 16 20 C 0.62 15.85 7.86 86.79 0.68 16.53 16 21 O -0.57 -19.30 17.34 -3.92 -0.07 -19.37 16 22 C 0.13 2.60 7.80 137.13 1.07 3.67 16 23 N -0.50 -6.37 8.86 -193.03 -1.71 -8.09 16 24 C 0.22 0.67 13.14 180.30 2.37 3.04 16 25 N -0.38 -2.18 6.93 -60.38 -0.42 -2.60 16 26 H 0.47 -1.59 8.96 -219.80 -1.97 -3.56 16 27 N -0.28 -5.29 12.30 -52.44 -0.65 -5.93 16 28 C 0.11 1.92 6.08 86.85 0.53 2.45 16 29 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 31 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 32 H 0.41 7.68 8.34 -92.71 -0.77 6.91 16 33 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 0.78 8.04 -2.38 -0.02 0.76 16 36 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.98 7.75 -2.38 -0.02 0.96 16 38 H 0.09 0.97 7.61 -2.39 -0.02 0.95 16 39 H 0.29 -2.83 8.06 -2.91 -0.02 -2.86 16 40 H 0.07 1.50 8.04 -2.39 -0.02 1.49 16 41 H 0.07 1.40 8.00 -2.39 -0.02 1.38 16 Total: -1.00 -95.18 368.50 -0.62 -95.80 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -1.65 Total: 5.49 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 7.99 Total: 13.91 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -7.70 Total: -106.90 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.12 Total: -45.17 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -95.18 -0.62 -95.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284376826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.110 kcal (2) G-P(sol) polarization free energy of solvation -95.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds