Wall clock time and date at job start Tue Mar 31 2020 22:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86794 * 120.00077 * 2 1 4 4 H 1.48502 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47139 * 299.99971 * 3 2 1 6 6 H 1.48494 * 109.47353 * 60.00296 * 3 2 1 7 7 C 1.38805 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99575 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00080 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47493 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99896 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00676 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00459 * 180.02562 * 13 11 10 15 15 C 1.53493 * 114.20796 * 155.00124 * 14 13 11 16 16 N 1.47065 * 87.98695 * 87.51476 * 15 14 13 17 17 C 1.34777 * 136.06111 * 207.07942 * 16 15 14 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.46912 * 180.02562 * 19 17 16 21 21 N 1.46499 * 109.46840 * 180.02562 * 20 19 17 22 22 C 1.35321 * 125.87102 * 124.99920 * 21 20 19 23 23 C 1.35347 * 106.17576 * 179.97438 * 22 21 20 24 24 N 1.33777 * 106.49832 * 0.02562 * 23 22 21 25 25 N 1.28635 * 108.88300 * 359.73058 * 24 23 22 26 26 C 1.47071 * 87.88672 * 27.34164 * 16 15 14 27 27 H 0.97006 * 119.99903 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47349 * 59.99326 * 10 9 7 29 29 H 1.09001 * 109.47136 * 299.99817 * 10 9 7 30 30 H 0.97001 * 119.99406 * 359.97438 * 13 11 10 31 31 H 1.08997 * 113.28040 * 21.93150 * 14 13 11 32 32 H 1.08997 * 113.46918 * 332.73800 * 15 14 13 33 33 H 1.08999 * 113.51857 * 202.30491 * 15 14 13 34 34 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 35 35 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 36 36 H 1.09001 * 109.47194 * 299.99742 * 20 19 17 37 37 H 1.08992 * 109.47399 * 59.99914 * 20 19 17 38 38 H 1.07997 * 126.91088 * 0.02562 * 22 21 20 39 39 H 1.08004 * 126.75225 * 179.97438 * 23 22 21 40 40 H 1.09001 * 113.46536 * 87.43211 * 26 16 15 41 41 H 1.08993 * 113.47241 * 217.87860 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0018 14 6 2.3301 -7.7152 -0.0030 15 6 3.2977 -8.7491 -0.5952 16 7 3.8885 -8.8869 0.7445 17 6 5.0922 -9.2311 1.2436 18 8 5.9992 -9.5221 0.4929 19 6 5.3111 -9.2543 2.7345 20 6 6.7520 -9.6741 3.0319 21 7 6.9646 -9.6973 4.4812 22 6 7.4199 -10.7502 5.1990 23 6 7.4638 -10.3374 6.4873 24 7 7.0383 -9.0692 6.4946 25 7 6.7554 -8.7180 5.2899 26 6 2.5859 -8.4901 1.3002 27 1 -0.4850 0.8401 0.0004 28 1 3.1243 -3.7314 0.8894 29 1 3.1243 -3.7315 -0.8905 30 1 3.8006 -6.1836 -0.0022 31 1 1.3093 -7.7926 -0.3772 32 1 3.9838 -8.3299 -1.3311 33 1 2.8042 -9.6550 -0.9472 34 1 4.6233 -9.9657 3.1916 35 1 5.1307 -8.2603 3.1437 36 1 6.9327 -10.6681 2.6226 37 1 7.4395 -8.9625 2.5748 38 1 7.6941 -11.7236 4.8201 39 1 7.7795 -10.9181 7.3415 40 1 1.9040 -9.3275 1.4482 41 1 2.6655 -7.8503 2.1790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284880508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:54 Heat of formation + Delta-G solvation = 74.721227 kcal Electronic energy + Delta-G solvation = -25423.341876 eV Core-core repulsion = 21468.884774 eV Total energy + Delta-G solvation = -3954.457102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.61972 -41.12406 -39.32620 -38.12981 -35.68062 -33.68496 -32.45984 -31.85453 -31.38574 -30.10496 -28.57833 -26.63474 -25.58215 -25.41500 -23.08451 -22.41515 -21.59097 -20.68221 -19.36439 -18.36813 -17.94774 -17.12636 -17.05491 -16.83676 -16.31923 -16.04961 -15.90988 -15.38241 -15.08451 -14.86525 -14.82365 -14.43692 -13.99577 -13.58724 -13.40524 -13.36320 -13.23164 -13.14181 -12.58418 -12.38981 -12.29851 -12.03648 -11.91648 -11.37827 -11.26970 -11.08800 -11.05604 -10.78820 -10.63205 -10.33354 -9.85185 -9.78662 -9.64480 -9.28878 -9.13806 -9.08316 -8.29565 -6.54846 -6.25266 -3.96260 1.18288 1.76220 2.05725 2.22533 2.37905 2.83124 2.85393 3.20287 3.25088 3.30021 3.55837 3.79212 3.81753 4.02981 4.06821 4.17102 4.18377 4.46883 4.56016 4.62614 4.80855 4.84313 4.88952 4.94059 4.98114 5.04164 5.10409 5.11030 5.18863 5.27728 5.34288 5.43175 5.69050 5.76494 5.80406 6.07056 6.11867 6.40312 7.15119 7.48751 7.55564 7.57353 8.13342 8.32290 8.41283 9.20654 10.82181 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.002120 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.741525 B =13203.495967 C =14844.599633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.058 6.058 10 C -0.155 4.155 11 C 0.538 3.462 12 O -0.512 6.512 13 N -0.719 5.719 14 C 0.115 3.885 15 C 0.096 3.904 16 N -0.645 5.645 17 C 0.551 3.449 18 O -0.542 6.542 19 C -0.150 4.150 20 C 0.132 3.868 21 N -0.293 5.293 22 C -0.049 4.049 23 C -0.053 4.053 24 N -0.270 5.270 25 N -0.082 5.082 26 C 0.079 3.921 27 H 0.268 0.732 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.402 0.598 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.191 0.809 39 H 0.190 0.810 40 H 0.100 0.900 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.417 -26.375 4.940 29.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.325 3.675 12 O -0.385 6.385 13 N -0.373 5.373 14 C 0.007 3.993 15 C -0.027 4.027 16 N -0.381 5.381 17 C 0.341 3.659 18 O -0.419 6.419 19 C -0.190 4.190 20 C 0.011 3.989 21 N -0.087 5.087 22 C -0.200 4.200 23 C -0.210 4.210 24 N -0.136 5.136 25 N -0.062 5.062 26 C -0.045 4.045 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.236 0.764 31 H 0.148 0.852 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.208 0.792 39 H 0.207 0.793 40 H 0.118 0.882 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.477 -25.323 4.741 27.812 hybrid contribution 2.793 0.004 -0.107 2.795 sum 13.270 -25.319 4.634 28.959 Atomic orbital electron populations 1.70022 1.05947 1.27415 1.46865 1.24998 0.95047 0.99081 0.94469 0.86106 0.79604 0.81809 0.77929 1.19601 1.20552 1.20520 1.22901 0.94954 0.91548 1.58974 0.90828 1.85376 1.04648 0.96397 1.96740 1.23539 1.06817 0.94996 1.05158 1.20391 0.86435 0.86216 0.74484 1.90713 1.15240 1.85463 1.47084 1.45646 1.10159 1.03971 1.77482 1.22107 0.99720 0.82010 0.95479 1.23465 0.94136 0.98493 0.86638 1.49667 1.09711 1.67832 1.10880 1.19696 0.80737 0.75870 0.89636 1.90758 1.41339 1.49087 1.60745 1.21806 0.96946 1.06369 0.93926 1.21823 0.97722 1.06282 0.73074 1.47560 1.42120 1.09077 1.09904 1.23742 1.07379 0.96097 0.92798 1.23678 1.06241 0.93877 0.97219 1.75173 1.14296 1.12525 1.11595 1.78362 1.19665 1.13193 0.95020 1.23819 0.82542 0.98424 0.99725 0.92195 0.89044 0.89037 0.76387 0.85194 0.89505 0.88062 0.87937 0.86717 0.86666 0.87106 0.79193 0.79274 0.88164 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.00 9.50 30.94 0.29 -14.70 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.15 -2.94 6.16 36.00 0.22 -2.72 16 11 C 0.54 8.98 7.85 -10.99 -0.09 8.90 16 12 O -0.51 -10.41 15.45 5.55 0.09 -10.32 16 13 N -0.72 -8.19 5.40 -53.49 -0.29 -8.48 16 14 C 0.11 0.99 4.61 -67.67 -0.31 0.68 16 15 C 0.10 0.67 8.38 -8.50 -0.07 0.59 16 16 N -0.65 -4.93 3.69 -185.05 -0.68 -5.61 16 17 C 0.55 4.71 8.08 -10.98 -0.09 4.62 16 18 O -0.54 -6.29 16.76 5.56 0.09 -6.20 16 19 C -0.15 -0.95 5.66 -27.88 -0.16 -1.10 16 20 C 0.13 0.79 5.74 -4.04 -0.02 0.77 16 21 N -0.29 -2.31 3.44 -61.26 -0.21 -2.52 16 22 C -0.05 -0.29 11.57 -17.04 -0.20 -0.49 16 23 C -0.05 -0.40 12.05 -17.74 -0.21 -0.62 16 24 N -0.27 -3.16 12.41 30.24 0.38 -2.79 16 25 N -0.08 -0.94 12.92 60.35 0.78 -0.16 16 26 C 0.08 0.53 8.25 -8.36 -0.07 0.47 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 30 H 0.40 3.95 8.76 -40.82 -0.36 3.59 16 31 H 0.13 1.20 7.45 -51.93 -0.39 0.81 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.82 8.12 -51.93 -0.42 0.39 16 36 H 0.12 0.47 8.02 -51.93 -0.42 0.05 16 37 H 0.11 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.19 0.33 8.06 -52.49 -0.42 -0.09 16 39 H 0.19 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -38.28 377.75 -6.81 -45.09 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.35 Total: -0.51 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.80 Total: -1.64 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.71 Total: -44.61 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.18 Total: -16.52 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.28 -6.81 -45.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284880508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.812 kcal (2) G-P(sol) polarization free energy of solvation -38.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds