Wall clock time and date at job start Tue Mar 31 2020 22:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86794 * 120.00077 * 2 1 4 4 H 1.48502 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47139 * 299.99971 * 3 2 1 6 6 H 1.48494 * 109.47353 * 60.00296 * 3 2 1 7 7 C 1.38805 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99575 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00080 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47493 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99896 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00676 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00459 * 180.02562 * 13 11 10 15 15 C 1.53493 * 114.20796 * 155.00124 * 14 13 11 16 16 N 1.47065 * 87.98695 * 87.51476 * 15 14 13 17 17 C 1.34777 * 136.06111 * 207.07942 * 16 15 14 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.46912 * 180.02562 * 19 17 16 21 21 N 1.46499 * 109.46840 * 180.02562 * 20 19 17 22 22 C 1.35321 * 125.87102 * 124.99920 * 21 20 19 23 23 C 1.35347 * 106.17576 * 179.97438 * 22 21 20 24 24 N 1.33777 * 106.49832 * 0.02562 * 23 22 21 25 25 N 1.28635 * 108.88300 * 359.73058 * 24 23 22 26 26 C 1.47071 * 87.88672 * 27.34164 * 16 15 14 27 27 H 0.97006 * 119.99903 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47349 * 59.99326 * 10 9 7 29 29 H 1.09001 * 109.47136 * 299.99817 * 10 9 7 30 30 H 0.97001 * 119.99406 * 359.97438 * 13 11 10 31 31 H 1.08997 * 113.28040 * 21.93150 * 14 13 11 32 32 H 1.08997 * 113.46918 * 332.73800 * 15 14 13 33 33 H 1.08999 * 113.51857 * 202.30491 * 15 14 13 34 34 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 35 35 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 36 36 H 1.09001 * 109.47194 * 299.99742 * 20 19 17 37 37 H 1.08992 * 109.47399 * 59.99914 * 20 19 17 38 38 H 1.07997 * 126.91088 * 0.02562 * 22 21 20 39 39 H 1.08004 * 126.75225 * 179.97438 * 23 22 21 40 40 H 1.09001 * 113.46536 * 87.43211 * 26 16 15 41 41 H 1.08993 * 113.47241 * 217.87860 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0018 14 6 2.3301 -7.7152 -0.0030 15 6 3.2977 -8.7491 -0.5952 16 7 3.8885 -8.8869 0.7445 17 6 5.0922 -9.2311 1.2436 18 8 5.9992 -9.5221 0.4929 19 6 5.3111 -9.2543 2.7345 20 6 6.7520 -9.6741 3.0319 21 7 6.9646 -9.6973 4.4812 22 6 7.4199 -10.7502 5.1990 23 6 7.4638 -10.3374 6.4873 24 7 7.0383 -9.0692 6.4946 25 7 6.7554 -8.7180 5.2899 26 6 2.5859 -8.4901 1.3002 27 1 -0.4850 0.8401 0.0004 28 1 3.1243 -3.7314 0.8894 29 1 3.1243 -3.7315 -0.8905 30 1 3.8006 -6.1836 -0.0022 31 1 1.3093 -7.7926 -0.3772 32 1 3.9838 -8.3299 -1.3311 33 1 2.8042 -9.6550 -0.9472 34 1 4.6233 -9.9657 3.1916 35 1 5.1307 -8.2603 3.1437 36 1 6.9327 -10.6681 2.6226 37 1 7.4395 -8.9625 2.5748 38 1 7.6941 -11.7236 4.8201 39 1 7.7795 -10.9181 7.3415 40 1 1.9040 -9.3275 1.4482 41 1 2.6655 -7.8503 2.1790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284880508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:54 Heat of formation + Delta-G solvation = 44.901521 kcal Electronic energy + Delta-G solvation = -25424.634956 eV Core-core repulsion = 21468.884774 eV Total energy + Delta-G solvation = -3955.750182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.20436 -41.86314 -40.38013 -39.04771 -36.25966 -34.80155 -34.58385 -32.49701 -31.95107 -31.20765 -29.61665 -27.67207 -27.20459 -26.06744 -23.65001 -23.20831 -22.28045 -21.74676 -20.05630 -19.84811 -18.91100 -18.10486 -17.68794 -17.56960 -17.23933 -16.99398 -16.88449 -16.62158 -16.35933 -16.04288 -15.80902 -15.34280 -14.94376 -14.78219 -14.48375 -14.29337 -14.01299 -13.92622 -13.72488 -13.42510 -13.16721 -13.02620 -12.92181 -12.85588 -12.61365 -12.48094 -12.09719 -11.87078 -11.72695 -11.27198 -11.16531 -11.05425 -11.00439 -10.34463 -10.29039 -10.20488 -9.88332 -8.66266 -8.35995 -6.12959 0.63936 1.25122 1.25659 1.40323 1.41822 1.45472 1.53477 1.56714 1.63094 1.80592 2.16402 2.26545 2.98389 3.18739 3.29302 3.34590 3.42221 3.58689 3.73417 3.80301 3.90742 4.12985 4.20866 4.27013 4.28454 4.32607 4.37859 4.44029 4.50343 4.55429 4.61733 4.62663 4.70311 4.79706 4.85323 5.27546 5.41736 5.44442 5.62486 6.19172 6.37157 6.54365 6.90913 7.06107 7.16269 7.51708 8.73230 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.002120 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.741525 B =13203.495967 C =14844.599633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.080 0.920 9 S -0.142 6.142 10 C -0.134 4.134 11 C 0.544 3.456 12 O -0.553 6.553 13 N -0.697 5.697 14 C 0.101 3.899 15 C 0.104 3.896 16 N -0.647 5.647 17 C 0.553 3.447 18 O -0.574 6.574 19 C -0.140 4.140 20 C 0.132 3.868 21 N -0.291 5.291 22 C -0.031 4.031 23 C -0.066 4.066 24 N -0.315 5.315 25 N -0.129 5.129 26 C 0.090 3.910 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.412 0.588 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.236 0.764 39 H 0.217 0.783 40 H 0.132 0.868 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.255 -28.474 4.907 32.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.098 0.902 9 S 0.085 5.915 10 C -0.285 4.285 11 C 0.331 3.669 12 O -0.430 6.430 13 N -0.350 5.350 14 C -0.006 4.006 15 C -0.018 4.018 16 N -0.382 5.382 17 C 0.343 3.657 18 O -0.455 6.455 19 C -0.180 4.180 20 C 0.012 3.988 21 N -0.085 5.085 22 C -0.182 4.182 23 C -0.224 4.224 24 N -0.180 5.180 25 N -0.108 5.108 26 C -0.034 4.034 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.248 0.752 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.159 0.841 37 H 0.120 0.880 38 H 0.253 0.747 39 H 0.234 0.766 40 H 0.149 0.851 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.334 -27.440 4.707 30.451 hybrid contribution 2.284 0.464 -0.116 2.333 sum 14.618 -26.977 4.591 31.024 Atomic orbital electron populations 1.70173 1.07832 1.28547 1.48011 1.26087 0.95978 1.03207 0.93804 0.84938 0.78546 0.76562 0.78121 1.18298 1.19852 1.19934 1.23232 0.95292 0.92205 1.58766 0.90157 1.85474 1.10086 0.98933 1.97028 1.23388 1.03768 0.94717 1.06641 1.19914 0.86161 0.86289 0.74578 1.90703 1.16918 1.85850 1.49570 1.45366 1.09988 1.04261 1.75389 1.22339 1.00033 0.80516 0.97716 1.23523 0.93358 0.98766 0.86200 1.49722 1.09831 1.67272 1.11348 1.19954 0.80377 0.75216 0.90167 1.90746 1.42296 1.50773 1.61647 1.21715 0.97669 1.06267 0.92377 1.21944 0.97235 1.07507 0.72160 1.47729 1.41434 1.09041 1.10267 1.24475 1.04851 0.96887 0.91982 1.24293 1.06032 0.92927 0.99165 1.75102 1.15786 1.14856 1.12281 1.78305 1.22094 1.14867 0.95507 1.23855 0.82462 0.98909 0.98136 0.91960 0.87553 0.87405 0.75201 0.85523 0.90096 0.85179 0.86353 0.87756 0.84130 0.87982 0.74720 0.76606 0.85065 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.27 13.22 21.65 0.29 -54.99 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -30.97 9.50 67.96 0.65 -30.32 16 8 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 9 S -0.14 -7.68 20.57 -56.49 -1.16 -8.84 16 10 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 11 C 0.54 18.00 7.85 87.66 0.69 18.68 16 12 O -0.55 -22.83 15.45 -3.05 -0.05 -22.88 16 13 N -0.70 -14.96 5.40 -441.52 -2.38 -17.34 16 14 C 0.10 1.54 4.61 45.55 0.21 1.75 16 15 C 0.10 1.18 8.38 83.18 0.70 1.87 16 16 N -0.65 -8.28 3.69 -857.76 -3.16 -11.44 16 17 C 0.55 8.33 8.08 87.66 0.71 9.03 16 18 O -0.57 -12.36 16.76 -3.02 -0.05 -12.41 16 19 C -0.14 -1.52 5.66 29.85 0.17 -1.35 16 20 C 0.13 1.34 5.74 86.38 0.50 1.83 16 21 N -0.29 -4.14 3.44 -347.74 -1.20 -5.33 16 22 C -0.03 -0.28 11.57 83.49 0.97 0.69 16 23 C -0.07 -0.91 12.05 83.73 1.01 0.10 16 24 N -0.32 -7.38 12.41 -58.25 -0.72 -8.10 16 25 N -0.13 -2.92 12.92 37.02 0.48 -2.44 16 26 C 0.09 0.99 8.25 83.27 0.69 1.67 16 27 H 0.27 15.28 8.31 -92.70 -0.77 14.50 16 28 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 29 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.41 7.37 8.76 -92.71 -0.81 6.55 16 31 H 0.13 2.16 7.45 -2.39 -0.02 2.14 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.40 8.12 -2.39 -0.02 1.38 16 36 H 0.14 0.70 8.02 -2.39 -0.02 0.68 16 37 H 0.10 1.23 8.10 -2.39 -0.02 1.21 16 38 H 0.24 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.22 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -87.25 377.75 1.51 -85.75 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.26 Total: 11.76 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 7.18 Total: 0.61 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -6.70 Total: -99.64 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.10 Total: -35.29 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.16 Total: -8.84 kcal Total: -87.25 1.51 -85.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284880508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.649 kcal (2) G-P(sol) polarization free energy of solvation -87.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds