Wall clock time and date at job start Tue Mar 31 2020 22:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 120.00203 * 2 1 4 4 H 1.48498 * 109.46667 * 269.99496 * 3 2 1 5 5 H 1.48497 * 109.46903 * 29.99517 * 3 2 1 6 6 H 1.48497 * 109.47265 * 149.99652 * 3 2 1 7 7 C 1.38800 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00096 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.80994 * 99.99966 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46794 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00455 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99524 * 179.97438 * 11 10 9 14 14 C 1.47581 * 134.48730 * 179.97438 * 13 11 10 15 15 C 1.53945 * 86.11408 * 155.36043 * 14 13 11 16 16 C 1.53007 * 113.74177 * 137.95328 * 15 14 13 17 17 N 1.46500 * 109.47078 * 176.92478 * 16 15 14 18 18 C 1.34773 * 119.99722 * 179.97438 * 17 16 15 19 19 O 1.21281 * 120.00442 * 0.02562 * 18 17 16 20 20 C 1.50705 * 119.99762 * 179.97438 * 18 17 16 21 21 N 1.46500 * 109.47081 * 180.02562 * 20 18 17 22 22 C 1.34429 * 126.81895 * 124.99841 * 21 20 18 23 23 N 1.30837 * 108.07952 * 180.02562 * 22 21 20 24 24 C 1.33246 * 109.82318 * 359.97438 * 23 22 21 25 25 N 1.30712 * 108.94935 * 0.27015 * 24 23 22 26 26 C 1.47805 * 134.45968 * 359.86929 * 13 11 10 27 27 H 0.97002 * 120.00034 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47442 * 60.00035 * 10 9 7 29 29 H 1.08998 * 109.47221 * 299.99554 * 10 9 7 30 30 H 1.08996 * 113.76994 * 41.06164 * 14 13 11 31 31 H 1.09007 * 113.77015 * 269.66097 * 14 13 11 32 32 H 1.08999 * 113.74103 * 269.15253 * 15 14 13 33 33 H 1.08993 * 109.47323 * 56.92428 * 16 15 14 34 34 H 1.09001 * 109.46543 * 296.92194 * 16 15 14 35 35 H 0.96997 * 120.00182 * 0.02562 * 17 16 15 36 36 H 1.09002 * 109.47196 * 60.00345 * 20 18 17 37 37 H 1.08995 * 109.47509 * 300.00521 * 20 18 17 38 38 H 1.08000 * 125.96340 * 359.97438 * 22 21 20 39 39 H 1.08002 * 125.52127 * 179.97438 * 24 23 22 40 40 H 1.09004 * 113.77358 * 90.37856 * 26 13 11 41 41 H 1.09001 * 113.83316 * 318.91284 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3431 -0.0007 14 6 2.6887 -7.8108 -0.0010 15 6 4.0877 -7.8538 -0.6420 16 6 4.9913 -8.9510 -0.0757 17 7 6.2657 -8.9554 -0.7983 18 6 7.2242 -9.8436 -0.4685 19 8 7.0317 -10.6395 0.4261 20 6 8.5350 -9.8485 -1.2122 21 7 9.4002 -10.8989 -0.6699 22 6 9.9845 -11.8958 -1.3569 23 7 10.6735 -12.6208 -0.5133 24 6 10.5542 -12.1198 0.7156 25 7 9.7796 -11.0678 0.6717 26 6 4.3165 -6.4716 -0.0034 27 1 -0.4850 0.8401 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1243 -3.7314 -0.8895 30 1 1.8942 -8.1684 -0.6559 31 1 2.6488 -8.2485 0.9965 32 1 4.0718 -7.8368 -1.7317 33 1 4.5042 -9.9190 -0.1923 34 1 5.1740 -8.7611 0.9820 35 1 6.4199 -8.3186 -1.5135 36 1 9.0221 -8.8802 -1.0964 37 1 8.3520 -10.0388 -2.2697 38 1 9.8994 -12.0687 -2.4195 39 1 11.0181 -12.5210 1.6046 40 1 4.7555 -6.5154 0.9933 41 1 4.8193 -5.7619 -0.6603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284998167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:53 Heat of formation + Delta-G solvation = 67.731785 kcal Electronic energy + Delta-G solvation = -24987.141314 eV Core-core repulsion = 21032.381126 eV Total energy + Delta-G solvation = -3954.760187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.48544 -40.62695 -39.82146 -37.69699 -35.17519 -34.52651 -32.47760 -31.61196 -31.24487 -29.56432 -28.24539 -26.44006 -25.76779 -25.32009 -22.75349 -22.40899 -21.44478 -20.82308 -19.15932 -18.09901 -17.90997 -17.70304 -16.86054 -16.59684 -16.33834 -15.74190 -15.66741 -15.35863 -15.10124 -14.84938 -14.71914 -14.35229 -14.14721 -13.85484 -13.76989 -13.17432 -13.12808 -12.94513 -12.55230 -12.34130 -12.22273 -11.99197 -11.69685 -11.21595 -11.10487 -11.06659 -10.82364 -10.79569 -10.43618 -10.19145 -10.01736 -9.87056 -9.67500 -9.44478 -9.11381 -8.70284 -8.29513 -6.56010 -6.26241 -3.97620 1.16690 1.67462 1.96800 2.49818 2.60240 2.65294 2.98450 3.18327 3.19867 3.26217 3.48434 3.76738 3.88305 3.91604 4.04755 4.15409 4.31778 4.32896 4.43190 4.49913 4.66925 4.79268 4.88556 5.08939 5.14995 5.18018 5.22368 5.29945 5.41629 5.50963 5.69998 5.75708 5.80028 5.88072 5.93881 6.01238 6.06977 6.25770 6.81874 7.54645 7.56750 7.66248 7.71602 8.30298 8.46294 9.18898 10.81194 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020618 B = 0.001642 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.714313 B =17046.250752 C =18088.014269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.145 4.145 11 C 0.556 3.444 12 O -0.513 6.513 13 N -0.653 5.653 14 C 0.120 3.880 15 C -0.138 4.138 16 C 0.131 3.869 17 N -0.726 5.726 18 C 0.499 3.501 19 O -0.508 6.508 20 C 0.111 3.889 21 N -0.372 5.372 22 C 0.255 3.745 23 N -0.544 5.544 24 C 0.194 3.806 25 N -0.290 5.290 26 C 0.107 3.893 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.404 0.596 36 H 0.121 0.879 37 H 0.132 0.868 38 H 0.220 0.780 39 H 0.217 0.783 40 H 0.087 0.913 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.448 -21.990 -6.046 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.295 4.295 11 C 0.345 3.655 12 O -0.387 6.387 13 N -0.392 5.392 14 C -0.004 4.004 15 C -0.158 4.158 16 C 0.007 3.993 17 N -0.380 5.380 18 C 0.282 3.718 19 O -0.381 6.381 20 C -0.016 4.016 21 N -0.164 5.164 22 C -0.042 4.042 23 N -0.271 5.271 24 C -0.109 4.109 25 N -0.116 5.116 26 C -0.016 4.016 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.236 0.764 39 H 0.234 0.766 40 H 0.105 0.895 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.134 -22.372 -4.841 29.202 hybrid contribution 1.929 1.734 -0.562 2.655 sum 20.064 -20.637 -5.403 29.285 Atomic orbital electron populations 1.70014 1.05963 1.27521 1.46693 1.24995 0.95034 0.99038 0.94472 0.86161 0.79413 0.81528 0.78358 1.20246 1.20693 1.19695 1.22850 0.94876 0.91566 1.59168 0.90930 1.85426 1.04859 0.96372 1.96724 1.23471 1.06526 0.94791 1.04760 1.20066 0.85501 0.85219 0.74688 1.90719 1.14876 1.84966 1.48116 1.50028 1.07281 1.05755 1.76109 1.22984 0.95638 0.81016 1.00767 1.23480 0.95965 0.94532 1.01777 1.21371 0.82329 0.99065 0.96547 1.45877 1.15913 1.36945 1.39222 1.20427 0.85193 0.81583 0.84568 1.90836 1.79565 1.38210 1.29531 1.21577 0.89036 0.92163 0.98781 1.49993 1.37226 1.23094 1.06097 1.26106 0.92213 0.85584 1.00285 1.70547 1.25613 1.29901 1.01007 1.26060 0.96378 0.91956 0.96532 1.78215 1.17423 1.21312 0.94622 1.23315 0.82325 0.95095 1.00873 0.92125 0.89354 0.89377 0.89633 0.89665 0.87145 0.90531 0.90497 0.76136 0.86096 0.85005 0.76395 0.76650 0.89544 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -2.91 5.91 36.01 0.21 -2.69 16 11 C 0.56 10.45 8.07 -10.98 -0.09 10.36 16 12 O -0.51 -11.84 16.59 5.56 0.09 -11.75 16 13 N -0.65 -8.49 3.61 -178.16 -0.64 -9.13 16 14 C 0.12 1.11 8.41 -2.97 -0.02 1.09 16 15 C -0.14 -0.80 3.93 -89.68 -0.35 -1.15 16 16 C 0.13 0.71 5.51 -4.04 -0.02 0.69 16 17 N -0.73 -2.82 5.56 -60.29 -0.33 -3.15 16 18 C 0.50 3.21 7.87 -10.98 -0.09 3.13 16 19 O -0.51 -6.07 15.73 5.56 0.09 -5.98 16 20 C 0.11 0.33 7.03 -5.19 -0.04 0.30 16 21 N -0.37 -2.62 3.41 -63.81 -0.22 -2.83 16 22 C 0.25 1.51 12.63 -90.65 -1.14 0.37 16 23 N -0.54 -4.84 11.19 -15.83 -0.18 -5.01 16 24 C 0.19 1.73 13.03 -91.81 -1.20 0.54 16 25 N -0.29 -3.00 11.80 29.29 0.35 -2.66 16 26 C 0.11 0.85 8.19 -2.83 -0.02 0.83 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 29 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.71 8.10 -51.92 -0.42 0.29 16 32 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 35 H 0.40 0.30 8.47 -40.82 -0.35 -0.05 16 36 H 0.12 0.14 8.14 -51.93 -0.42 -0.29 16 37 H 0.13 -0.20 8.09 -51.93 -0.42 -0.62 16 38 H 0.22 0.17 8.06 -52.49 -0.42 -0.25 16 39 H 0.22 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.09 0.63 7.92 -51.93 -0.41 0.22 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -43.00 377.80 -9.58 -52.58 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -5.36 Total: -5.44 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.56 Total: 0.63 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.29 Total: -47.96 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.18 Total: -17.73 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -43.00 -9.58 -52.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284998167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.310 kcal (2) G-P(sol) polarization free energy of solvation -43.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds