Wall clock time and date at job start Tue Mar 31 2020 22:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 120.00203 * 2 1 4 4 H 1.48498 * 109.46667 * 269.99496 * 3 2 1 5 5 H 1.48497 * 109.46903 * 29.99517 * 3 2 1 6 6 H 1.48497 * 109.47265 * 149.99652 * 3 2 1 7 7 C 1.38800 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00096 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.80994 * 99.99966 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46794 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00455 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99524 * 179.97438 * 11 10 9 14 14 C 1.47581 * 134.48730 * 179.97438 * 13 11 10 15 15 C 1.53945 * 86.11408 * 155.36043 * 14 13 11 16 16 C 1.53007 * 113.74177 * 137.95328 * 15 14 13 17 17 N 1.46500 * 109.47078 * 176.92478 * 16 15 14 18 18 C 1.34773 * 119.99722 * 179.97438 * 17 16 15 19 19 O 1.21281 * 120.00442 * 0.02562 * 18 17 16 20 20 C 1.50705 * 119.99762 * 179.97438 * 18 17 16 21 21 N 1.46500 * 109.47081 * 180.02562 * 20 18 17 22 22 C 1.34429 * 126.81895 * 124.99841 * 21 20 18 23 23 N 1.30837 * 108.07952 * 180.02562 * 22 21 20 24 24 C 1.33246 * 109.82318 * 359.97438 * 23 22 21 25 25 N 1.30712 * 108.94935 * 0.27015 * 24 23 22 26 26 C 1.47805 * 134.45968 * 359.86929 * 13 11 10 27 27 H 0.97002 * 120.00034 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47442 * 60.00035 * 10 9 7 29 29 H 1.08998 * 109.47221 * 299.99554 * 10 9 7 30 30 H 1.08996 * 113.76994 * 41.06164 * 14 13 11 31 31 H 1.09007 * 113.77015 * 269.66097 * 14 13 11 32 32 H 1.08999 * 113.74103 * 269.15253 * 15 14 13 33 33 H 1.08993 * 109.47323 * 56.92428 * 16 15 14 34 34 H 1.09001 * 109.46543 * 296.92194 * 16 15 14 35 35 H 0.96997 * 120.00182 * 0.02562 * 17 16 15 36 36 H 1.09002 * 109.47196 * 60.00345 * 20 18 17 37 37 H 1.08995 * 109.47509 * 300.00521 * 20 18 17 38 38 H 1.08000 * 125.96340 * 359.97438 * 22 21 20 39 39 H 1.08002 * 125.52127 * 179.97438 * 24 23 22 40 40 H 1.09004 * 113.77358 * 90.37856 * 26 13 11 41 41 H 1.09001 * 113.83316 * 318.91284 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3431 -0.0007 14 6 2.6887 -7.8108 -0.0010 15 6 4.0877 -7.8538 -0.6420 16 6 4.9913 -8.9510 -0.0757 17 7 6.2657 -8.9554 -0.7983 18 6 7.2242 -9.8436 -0.4685 19 8 7.0317 -10.6395 0.4261 20 6 8.5350 -9.8485 -1.2122 21 7 9.4002 -10.8989 -0.6699 22 6 9.9845 -11.8958 -1.3569 23 7 10.6735 -12.6208 -0.5133 24 6 10.5542 -12.1198 0.7156 25 7 9.7796 -11.0678 0.6717 26 6 4.3165 -6.4716 -0.0034 27 1 -0.4850 0.8401 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1243 -3.7314 -0.8895 30 1 1.8942 -8.1684 -0.6559 31 1 2.6488 -8.2485 0.9965 32 1 4.0718 -7.8368 -1.7317 33 1 4.5042 -9.9190 -0.1923 34 1 5.1740 -8.7611 0.9820 35 1 6.4199 -8.3186 -1.5135 36 1 9.0221 -8.8802 -1.0964 37 1 8.3520 -10.0388 -2.2697 38 1 9.8994 -12.0687 -2.4195 39 1 11.0181 -12.5210 1.6046 40 1 4.7555 -6.5154 0.9933 41 1 4.8193 -5.7619 -0.6603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284998167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:52 Heat of formation + Delta-G solvation = 35.298446 kcal Electronic energy + Delta-G solvation = -24988.547729 eV Core-core repulsion = 21032.381126 eV Total energy + Delta-G solvation = -3956.166603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.96232 -41.45471 -40.51651 -38.94658 -35.76788 -34.95881 -34.60318 -32.37386 -32.12132 -30.56925 -28.94315 -27.70968 -27.17375 -26.30955 -23.27877 -22.86334 -22.06527 -21.43758 -20.35959 -19.53751 -18.54924 -18.29046 -17.98232 -17.28770 -17.02632 -16.89030 -16.64894 -16.54558 -16.12505 -15.86534 -15.74605 -15.31922 -14.88693 -14.71049 -14.63633 -14.37141 -14.03262 -13.73811 -13.61617 -13.45527 -13.21432 -12.97252 -12.89953 -12.73252 -12.61634 -12.36640 -11.89321 -11.75319 -11.35261 -11.15637 -10.98766 -10.91030 -10.74749 -10.49096 -10.30604 -10.11712 -9.78025 -8.70363 -8.36133 -6.15415 0.71629 1.20098 1.35819 1.42004 1.42490 1.53333 1.54802 1.56479 1.95497 2.04880 2.16086 2.25921 2.98178 3.17195 3.24149 3.56431 3.57952 3.64565 3.77593 3.78964 4.07142 4.12414 4.17609 4.22695 4.24808 4.42301 4.44755 4.47080 4.56623 4.59438 4.75320 4.79691 4.90803 5.20949 5.28764 5.39593 5.39961 5.49246 5.91662 6.18087 6.50667 6.56243 7.04917 7.08885 7.15267 7.22479 8.73173 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020618 B = 0.001642 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.714313 B =17046.250752 C =18088.014269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.118 4.118 11 C 0.551 3.449 12 O -0.572 6.572 13 N -0.652 5.652 14 C 0.107 3.893 15 C -0.102 4.102 16 C 0.138 3.862 17 N -0.708 5.708 18 C 0.496 3.504 19 O -0.571 6.571 20 C 0.108 3.892 21 N -0.377 5.377 22 C 0.263 3.737 23 N -0.580 5.580 24 C 0.182 3.818 25 N -0.337 5.337 26 C 0.102 3.898 27 H 0.271 0.729 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.424 0.576 36 H 0.144 0.856 37 H 0.186 0.814 38 H 0.269 0.731 39 H 0.231 0.769 40 H 0.098 0.902 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.510 -21.854 -8.033 33.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.269 4.269 11 C 0.340 3.660 12 O -0.451 6.451 13 N -0.388 5.388 14 C -0.015 4.015 15 C -0.121 4.121 16 C 0.013 3.987 17 N -0.362 5.362 18 C 0.281 3.719 19 O -0.449 6.449 20 C -0.016 4.016 21 N -0.169 5.169 22 C -0.032 4.032 23 N -0.308 5.308 24 C -0.120 4.120 25 N -0.164 5.164 26 C -0.019 4.019 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.151 0.849 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.262 0.738 36 H 0.162 0.838 37 H 0.203 0.797 38 H 0.284 0.716 39 H 0.247 0.753 40 H 0.116 0.884 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.257 -22.238 -6.870 31.521 hybrid contribution 1.024 1.541 0.025 1.850 sum 22.280 -20.697 -6.845 31.171 Atomic orbital electron populations 1.70186 1.08034 1.28659 1.47893 1.26147 0.95963 1.03362 0.93651 0.84938 0.78176 0.75886 0.78887 1.19102 1.20400 1.18147 1.23190 0.95341 0.91812 1.59054 0.89803 1.85632 1.10688 0.99416 1.97051 1.23261 1.03337 0.93926 1.06366 1.19799 0.85296 0.85908 0.74955 1.90690 1.17307 1.85760 1.51310 1.50076 1.09286 1.06150 1.73289 1.23329 0.97919 0.78411 1.01878 1.23211 0.93151 0.93185 1.02579 1.21156 0.82937 0.98498 0.96079 1.45695 1.14787 1.36656 1.39099 1.21059 0.86349 0.80646 0.83810 1.90824 1.80869 1.40825 1.32410 1.22044 0.86495 0.92449 1.00645 1.50184 1.37536 1.24056 1.05081 1.27040 0.90299 0.84124 1.01763 1.70530 1.27423 1.31442 1.01424 1.26440 0.96267 0.91906 0.97422 1.78102 1.18596 1.22409 0.97292 1.23738 0.79089 0.96643 1.02445 0.91964 0.87900 0.87219 0.90066 0.88751 0.84889 0.90940 0.91732 0.73810 0.83805 0.79661 0.71593 0.75315 0.88355 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.67 13.22 21.65 0.29 -55.38 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 42.83 29.55 68.60 2.03 44.86 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.55 -30.86 9.50 67.95 0.65 -30.22 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.12 -4.65 5.91 71.24 0.42 -4.23 16 11 C 0.55 20.63 8.07 87.66 0.71 21.33 16 12 O -0.57 -27.30 16.59 -3.01 -0.05 -27.35 16 13 N -0.65 -15.80 3.61 -835.96 -3.02 -18.82 16 14 C 0.11 1.80 8.41 86.49 0.73 2.53 16 15 C -0.10 -0.82 3.93 -10.13 -0.04 -0.86 16 16 C 0.14 1.12 5.51 86.38 0.48 1.59 16 17 N -0.71 -2.89 5.56 -463.05 -2.57 -5.47 16 18 C 0.50 5.08 7.87 87.66 0.69 5.77 16 19 O -0.57 -13.24 15.73 -3.03 -0.05 -13.29 16 20 C 0.11 0.23 7.03 85.63 0.60 0.83 16 21 N -0.38 -4.45 3.41 -355.80 -1.21 -5.66 16 22 C 0.26 2.44 12.63 180.36 2.28 4.72 16 23 N -0.58 -9.79 11.19 -203.99 -2.28 -12.08 16 24 C 0.18 3.29 13.03 180.76 2.36 5.65 16 25 N -0.34 -6.89 11.80 -61.24 -0.72 -7.61 16 26 C 0.10 1.26 8.19 86.45 0.71 1.97 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 29 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.45 8.10 -2.38 -0.02 1.43 16 32 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.75 7.87 -2.39 -0.02 0.73 16 35 H 0.42 -1.53 8.47 -92.71 -0.79 -2.32 16 36 H 0.14 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.19 -1.68 8.09 -2.39 -0.02 -1.70 16 38 H 0.27 -0.80 8.06 -2.91 -0.02 -0.82 16 39 H 0.23 2.80 8.06 -2.91 -0.02 2.77 16 40 H 0.10 1.09 7.92 -2.38 -0.02 1.07 16 41 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -101.61 377.80 1.56 -100.05 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: 0.28 Total: 0.21 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 10.04 Total: 10.32 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -9.53 Total: -105.02 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.10 Total: -40.63 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -101.61 1.56 -100.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284998167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.345 kcal (2) G-P(sol) polarization free energy of solvation -101.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds