Wall clock time and date at job start Tue Mar 31 2020 22:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81443 * 2 1 4 4 N 1.28517 * 109.43366 * 179.85868 * 3 2 1 5 5 N 1.28711 * 110.63966 * 0.41858 * 4 3 2 6 6 H 0.96997 * 126.03382 * 179.72318 * 5 4 3 7 7 C 1.37008 * 126.80670 * 180.31127 * 2 1 3 8 8 C 1.47229 * 127.19523 * 0.02562 * 7 2 1 9 9 O 1.21622 * 119.99456 * 359.97438 * 8 7 2 10 10 N 1.34776 * 120.00151 * 179.97438 * 8 7 2 11 11 C 1.47063 * 136.05604 * 354.51671 * 10 8 7 12 12 C 1.53240 * 88.08247 * 207.20191 * 11 10 8 13 13 C 1.47067 * 136.05359 * 174.88259 * 10 8 7 14 14 H 1.09002 * 113.46889 * 267.62338 * 13 10 8 15 15 C 1.52992 * 113.46969 * 38.06939 * 13 10 8 16 16 N 1.46502 * 109.47182 * 184.24817 * 15 13 10 17 17 C 1.34782 * 120.00006 * 184.97790 * 16 15 13 18 18 O 1.21282 * 119.99638 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99840 * 179.97438 * 17 16 15 20 20 S 1.80996 * 109.47076 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00135 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00089 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99994 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00102 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47204 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47517 * 120.00281 * 25 23 21 28 28 H 1.48501 * 109.47273 * 240.00272 * 25 23 21 29 29 H 1.08999 * 109.47324 * 269.68828 * 1 2 3 30 30 H 1.09000 * 109.47551 * 149.68271 * 1 2 3 31 31 H 1.09005 * 109.47043 * 29.68506 * 1 2 3 32 32 H 1.08999 * 113.46928 * 321.93209 * 11 10 8 33 33 H 1.09004 * 113.46882 * 92.37802 * 11 10 8 34 34 H 1.09003 * 114.32920 * 220.47094 * 12 11 10 35 35 H 1.09001 * 114.19960 * 87.72399 * 12 11 10 36 36 H 1.09001 * 109.46955 * 304.24775 * 15 13 10 37 37 H 1.08998 * 109.47396 * 64.24622 * 15 13 10 38 38 H 0.96999 * 120.00225 * 4.99003 * 16 15 13 39 39 H 1.08994 * 109.47079 * 300.00537 * 19 17 16 40 40 H 1.09003 * 109.46769 * 60.00871 * 19 17 16 41 41 H 0.97001 * 119.99929 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6834 0.0030 5 7 3.6056 -0.6016 -0.0038 6 1 4.4212 -1.1267 -0.0071 7 6 2.3279 -1.0970 -0.0060 8 6 1.9221 -2.5122 -0.0142 9 8 0.7420 -2.8064 -0.0158 10 7 2.8584 -3.4817 -0.0199 11 6 4.3247 -3.5371 -0.1178 12 6 4.1798 -4.9363 -0.7258 13 6 2.8627 -4.9500 0.0626 14 1 2.9695 -5.3274 1.0796 15 6 1.7064 -5.6062 -0.6944 16 7 1.7359 -7.0539 -0.4715 17 6 0.8685 -7.8538 -1.1230 18 8 0.0639 -7.3752 -1.8940 19 6 0.8993 -9.3431 -0.8942 20 16 -0.3760 -10.1353 -1.9051 21 6 -0.1222 -11.8193 -1.4534 22 1 0.6482 -12.0773 -0.7419 23 6 -0.9125 -12.8143 -2.0119 24 7 -1.8512 -12.4999 -2.8794 25 14 -0.6439 -14.5996 -1.5325 26 1 0.4643 -14.6865 -0.5479 27 1 -1.8871 -15.1424 -0.9283 28 1 -0.2950 -15.3895 -2.7406 29 1 -0.3634 -0.0056 1.0276 30 1 -0.3634 -0.8871 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 4.7414 -2.8057 -0.8102 33 1 4.8249 -3.5343 0.8507 34 1 4.9183 -5.6571 -0.3748 35 1 4.0526 -4.9421 -1.8083 36 1 0.7604 -5.2023 -0.3337 37 1 1.8065 -5.4005 -1.7601 38 1 2.3796 -7.4367 0.1449 39 1 1.8781 -9.7333 -1.1731 40 1 0.7111 -9.5528 0.1588 41 1 -2.4037 -13.1952 -3.2695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285834709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:58 Heat of formation + Delta-G solvation = 65.258843 kcal Electronic energy + Delta-G solvation = -25806.115602 eV Core-core repulsion = 21851.248180 eV Total energy + Delta-G solvation = -3954.867422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.88484 -41.19370 -39.10543 -38.39989 -34.74165 -34.36763 -32.92175 -32.44732 -30.78606 -30.08725 -28.17525 -27.83240 -25.50853 -24.87309 -23.81275 -23.12730 -21.77298 -20.69807 -20.19620 -18.68254 -17.91958 -17.20782 -17.14646 -16.85118 -16.58299 -15.97876 -15.39720 -15.27282 -14.82379 -14.57006 -14.33935 -14.23661 -13.97459 -13.65119 -13.45667 -13.30586 -13.11187 -13.02816 -12.58918 -12.53844 -12.33538 -12.20820 -11.83263 -11.62539 -11.29814 -11.08798 -11.05627 -11.03992 -10.77655 -10.51155 -9.83720 -9.82298 -9.49425 -9.41620 -9.09878 -8.95418 -8.24951 -6.52070 -6.23520 -3.94275 0.35180 1.75645 1.78011 1.97938 2.51557 3.01951 3.05923 3.19981 3.26827 3.31059 3.47256 3.62258 3.69545 3.83922 4.16632 4.18289 4.23686 4.28139 4.44248 4.51930 4.54752 4.58883 4.93469 5.11389 5.11704 5.12739 5.25977 5.34707 5.37470 5.51755 5.58756 5.61420 5.85422 5.89242 5.91361 6.03816 6.09746 6.48496 6.89972 7.38336 7.57659 7.61430 7.76089 8.33366 8.56307 9.21812 10.83926 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030232 B = 0.001855 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.937876 B =15087.661915 C =15789.777129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.066 3.934 3 N -0.267 5.267 4 N -0.045 5.045 5 N -0.376 5.376 6 H 0.448 0.552 7 C -0.068 4.068 8 C 0.623 3.377 9 O -0.494 6.494 10 N -0.644 5.644 11 C 0.083 3.917 12 C -0.145 4.145 13 C 0.130 3.870 14 H 0.107 0.893 15 C 0.115 3.885 16 N -0.737 5.737 17 C 0.532 3.468 18 O -0.512 6.512 19 C -0.152 4.152 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.380 21.411 8.941 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 N -0.134 5.134 4 N -0.026 5.026 5 N -0.105 5.105 6 H 0.296 0.704 7 C -0.202 4.202 8 C 0.410 3.590 9 O -0.366 6.366 10 N -0.381 5.381 11 C -0.040 4.040 12 C -0.183 4.183 13 C 0.027 3.973 14 H 0.124 0.876 15 C -0.010 4.010 16 N -0.393 5.393 17 C 0.318 3.682 18 O -0.386 6.386 19 C -0.303 4.303 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.502 5.502 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.709 23.557 7.527 29.298 hybrid contribution 1.662 -3.074 1.587 3.838 sum 17.371 20.483 9.114 28.362 Atomic orbital electron populations 1.20384 0.84470 1.04822 1.04086 1.22420 0.98803 0.86759 0.99402 1.74993 0.95094 1.25866 1.17476 1.78200 1.16169 0.92217 1.16046 1.45672 1.08846 1.07027 1.48981 0.70413 1.21982 0.85056 0.95978 1.17134 1.16191 0.84641 0.81219 0.76913 1.90919 1.15595 1.81223 1.48863 1.49555 1.07493 1.07325 1.73744 1.23165 0.80688 0.98763 1.01383 1.23527 0.97029 0.95886 1.01821 1.22949 0.95230 0.78812 1.00285 0.87568 1.21441 0.98530 0.80643 1.00402 1.45834 1.38993 1.06272 1.48215 1.20319 0.79788 0.88465 0.79605 1.90729 1.36818 1.76187 1.34831 1.23520 1.06993 0.93570 1.06205 1.85457 1.40416 1.02541 1.54942 1.22902 1.22831 0.91800 1.30837 0.90859 1.25002 0.94489 0.99553 0.94609 1.70028 1.19252 1.33747 1.27180 0.86109 0.78240 0.82688 0.78400 1.19634 1.20559 1.20577 0.89685 0.88502 0.89975 0.90533 0.88511 0.87987 0.87706 0.89852 0.90710 0.76898 0.89168 0.89168 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.93 36.01 0.36 -0.31 16 2 C 0.07 0.67 7.30 -82.39 -0.60 0.07 16 3 N -0.27 -2.96 12.35 33.52 0.41 -2.54 16 4 N -0.04 -0.43 13.35 60.35 0.81 0.38 16 5 N -0.38 -2.53 6.89 33.31 0.23 -2.30 16 6 H 0.45 1.27 6.27 -190.33 -1.19 0.08 16 7 C -0.07 -0.61 7.13 -82.33 -0.59 -1.19 16 8 C 0.62 6.11 7.98 -12.61 -0.10 6.01 16 9 O -0.49 -6.58 14.36 5.26 0.08 -6.50 16 10 N -0.64 -4.35 3.57 -178.94 -0.64 -4.99 16 11 C 0.08 0.19 7.14 -8.63 -0.06 0.13 16 12 C -0.14 -0.48 8.00 -26.35 -0.21 -0.69 16 13 C 0.13 0.83 4.09 -72.38 -0.30 0.53 16 14 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 15 C 0.11 1.29 5.40 -4.04 -0.02 1.27 16 16 N -0.74 -8.85 5.55 -60.29 -0.33 -9.19 16 17 C 0.53 9.59 7.85 -10.98 -0.09 9.51 16 18 O -0.51 -11.66 15.86 5.56 0.09 -11.57 16 19 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 22 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 25 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.92 6.61 -51.93 -0.34 0.58 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.06 6.90 -51.93 -0.36 -0.30 16 33 H 0.10 0.01 8.14 -51.93 -0.42 -0.42 16 34 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.10 0.46 7.95 -51.93 -0.41 0.05 16 36 H 0.08 1.20 7.04 -51.93 -0.37 0.84 16 37 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 38 H 0.40 3.26 8.48 -40.82 -0.35 2.91 16 39 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -38.99 366.79 -7.45 -46.44 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.93 Total: -2.10 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.19 Total: -0.21 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.21 Total: -43.90 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.16 Total: -18.07 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.99 -7.45 -46.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285834709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.702 kcal (2) G-P(sol) polarization free energy of solvation -38.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds