Wall clock time and date at job start Tue Mar 31 2020 22:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81443 * 2 1 4 4 N 1.28517 * 109.43366 * 179.85868 * 3 2 1 5 5 N 1.28711 * 110.63966 * 0.41858 * 4 3 2 6 6 H 0.96997 * 126.03382 * 179.72318 * 5 4 3 7 7 C 1.37008 * 126.80670 * 180.31127 * 2 1 3 8 8 C 1.47229 * 127.19523 * 0.02562 * 7 2 1 9 9 O 1.21622 * 119.99456 * 359.97438 * 8 7 2 10 10 N 1.34776 * 120.00151 * 179.97438 * 8 7 2 11 11 C 1.47063 * 136.05604 * 354.51671 * 10 8 7 12 12 C 1.53240 * 88.08247 * 207.20191 * 11 10 8 13 13 C 1.47067 * 136.05359 * 174.88259 * 10 8 7 14 14 H 1.09002 * 113.46889 * 267.62338 * 13 10 8 15 15 C 1.52992 * 113.46969 * 38.06939 * 13 10 8 16 16 N 1.46502 * 109.47182 * 184.24817 * 15 13 10 17 17 C 1.34782 * 120.00006 * 184.97790 * 16 15 13 18 18 O 1.21282 * 119.99638 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99840 * 179.97438 * 17 16 15 20 20 S 1.80996 * 109.47076 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00135 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00089 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99994 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00102 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47204 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47517 * 120.00281 * 25 23 21 28 28 H 1.48501 * 109.47273 * 240.00272 * 25 23 21 29 29 H 1.08999 * 109.47324 * 269.68828 * 1 2 3 30 30 H 1.09000 * 109.47551 * 149.68271 * 1 2 3 31 31 H 1.09005 * 109.47043 * 29.68506 * 1 2 3 32 32 H 1.08999 * 113.46928 * 321.93209 * 11 10 8 33 33 H 1.09004 * 113.46882 * 92.37802 * 11 10 8 34 34 H 1.09003 * 114.32920 * 220.47094 * 12 11 10 35 35 H 1.09001 * 114.19960 * 87.72399 * 12 11 10 36 36 H 1.09001 * 109.46955 * 304.24775 * 15 13 10 37 37 H 1.08998 * 109.47396 * 64.24622 * 15 13 10 38 38 H 0.96999 * 120.00225 * 4.99003 * 16 15 13 39 39 H 1.08994 * 109.47079 * 300.00537 * 19 17 16 40 40 H 1.09003 * 109.46769 * 60.00871 * 19 17 16 41 41 H 0.97001 * 119.99929 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6834 0.0030 5 7 3.6056 -0.6016 -0.0038 6 1 4.4212 -1.1267 -0.0071 7 6 2.3279 -1.0970 -0.0060 8 6 1.9221 -2.5122 -0.0142 9 8 0.7420 -2.8064 -0.0158 10 7 2.8584 -3.4817 -0.0199 11 6 4.3247 -3.5371 -0.1178 12 6 4.1798 -4.9363 -0.7258 13 6 2.8627 -4.9500 0.0626 14 1 2.9695 -5.3274 1.0796 15 6 1.7064 -5.6062 -0.6944 16 7 1.7359 -7.0539 -0.4715 17 6 0.8685 -7.8538 -1.1230 18 8 0.0639 -7.3752 -1.8940 19 6 0.8993 -9.3431 -0.8942 20 16 -0.3760 -10.1353 -1.9051 21 6 -0.1222 -11.8193 -1.4534 22 1 0.6482 -12.0773 -0.7419 23 6 -0.9125 -12.8143 -2.0119 24 7 -1.8512 -12.4999 -2.8794 25 14 -0.6439 -14.5996 -1.5325 26 1 0.4643 -14.6865 -0.5479 27 1 -1.8871 -15.1424 -0.9283 28 1 -0.2950 -15.3895 -2.7406 29 1 -0.3634 -0.0056 1.0276 30 1 -0.3634 -0.8871 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 4.7414 -2.8057 -0.8102 33 1 4.8249 -3.5343 0.8507 34 1 4.9183 -5.6571 -0.3748 35 1 4.0526 -4.9421 -1.8083 36 1 0.7604 -5.2023 -0.3337 37 1 1.8065 -5.4005 -1.7601 38 1 2.3796 -7.4367 0.1449 39 1 1.8781 -9.7333 -1.1731 40 1 0.7111 -9.5528 0.1588 41 1 -2.4037 -13.1952 -3.2695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285834709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:58 Heat of formation + Delta-G solvation = 32.939877 kcal Electronic energy + Delta-G solvation = -25807.517058 eV Core-core repulsion = 21851.248180 eV Total energy + Delta-G solvation = -3956.268878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.57652 -41.77388 -40.46448 -39.14454 -35.84192 -35.17947 -34.57480 -33.65386 -31.76115 -31.03583 -28.92243 -28.73571 -27.62649 -25.52935 -24.53343 -23.67002 -22.41432 -21.92800 -20.95432 -19.90399 -19.15904 -18.00012 -17.86227 -17.83187 -17.49153 -17.10409 -16.87348 -16.65558 -16.18976 -15.78754 -15.24363 -15.04183 -14.99646 -14.68134 -14.56642 -14.22247 -14.09653 -13.84505 -13.64241 -13.52110 -13.14992 -13.05862 -12.97052 -12.89502 -12.60911 -12.55962 -12.33083 -11.87421 -11.74507 -11.68352 -11.25522 -11.15217 -10.99994 -10.55218 -10.25055 -10.16452 -9.97199 -8.66377 -8.33821 -6.12110 -0.33830 1.02395 1.12597 1.29244 1.42537 1.43133 1.52123 1.59946 1.61348 1.81339 2.27372 2.32754 2.96570 3.00609 3.17145 3.30069 3.33639 3.57110 3.65454 3.81601 3.85357 3.99066 4.01189 4.24043 4.32736 4.37813 4.41011 4.52694 4.55386 4.65691 4.69024 4.84643 4.87840 4.98422 5.18288 5.21769 5.35477 5.43342 5.56806 6.21110 6.34055 6.48837 6.70239 7.04797 7.07604 7.24610 8.75649 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030232 B = 0.001855 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.937876 B =15087.661915 C =15789.777129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.049 3.951 3 N -0.293 5.293 4 N -0.052 5.052 5 N -0.348 5.348 6 H 0.465 0.535 7 C -0.066 4.066 8 C 0.618 3.382 9 O -0.543 6.543 10 N -0.645 5.645 11 C 0.083 3.917 12 C -0.133 4.133 13 C 0.128 3.872 14 H 0.136 0.864 15 C 0.118 3.882 16 N -0.704 5.704 17 C 0.532 3.468 18 O -0.569 6.569 19 C -0.126 4.126 20 S -0.160 6.160 21 C -0.542 4.542 22 H 0.086 0.914 23 C 0.010 3.990 24 N -0.913 5.913 25 Si 1.000 3.000 26 H -0.254 1.254 27 H -0.276 1.276 28 H -0.275 1.275 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.422 0.578 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.353 20.573 11.045 31.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 N -0.159 5.159 4 N -0.033 5.033 5 N -0.080 5.080 6 H 0.318 0.682 7 C -0.200 4.200 8 C 0.406 3.594 9 O -0.418 6.418 10 N -0.381 5.381 11 C -0.037 4.037 12 C -0.170 4.170 13 C 0.025 3.975 14 H 0.154 0.846 15 C -0.007 4.007 16 N -0.359 5.359 17 C 0.318 3.682 18 O -0.447 6.447 19 C -0.277 4.277 20 S 0.067 5.933 21 C -0.690 4.690 22 H 0.104 0.896 23 C -0.194 4.194 24 N -0.550 5.550 25 Si 0.822 3.178 26 H -0.177 1.177 27 H -0.202 1.202 28 H -0.200 1.200 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.260 0.740 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.819 22.726 9.677 31.669 hybrid contribution 0.533 -2.748 0.958 2.958 sum 20.351 19.978 10.635 30.437 Atomic orbital electron populations 1.20357 0.84103 1.04540 1.04457 1.22684 0.99476 0.87146 0.99839 1.74972 0.95649 1.26605 1.18722 1.78122 1.15714 0.93166 1.16340 1.45594 1.08931 1.06340 1.47158 0.68247 1.21853 0.85633 0.95499 1.17011 1.16308 0.84526 0.81847 0.76727 1.90902 1.17714 1.81909 1.51309 1.49727 1.09415 1.06961 1.72016 1.23576 0.77754 0.98595 1.03819 1.23526 0.95332 0.97386 1.00793 1.23219 0.94366 0.78173 1.01701 0.84632 1.21421 0.99436 0.79772 1.00070 1.45432 1.37435 1.06309 1.46750 1.20164 0.80077 0.88398 0.79534 1.90720 1.39481 1.76878 1.37658 1.23345 1.05038 0.93797 1.05494 1.85707 1.45026 1.04438 1.58121 1.23240 1.23087 0.91781 1.30909 0.89569 1.26166 0.93963 1.04954 0.94339 1.70203 1.20558 1.35475 1.28715 0.84880 0.78636 0.75842 0.78422 1.17713 1.20173 1.20024 0.89006 0.89945 0.88987 0.88600 0.84761 0.84526 0.89045 0.93452 0.92643 0.74009 0.86451 0.86962 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 9.93 71.24 0.71 -0.66 16 2 C 0.05 1.00 7.30 42.05 0.31 1.31 16 3 N -0.29 -6.40 12.35 -47.88 -0.59 -6.99 16 4 N -0.05 -0.92 13.35 37.02 0.49 -0.42 16 5 N -0.35 -3.96 6.89 -48.52 -0.33 -4.29 16 6 H 0.46 1.07 6.27 -219.90 -1.38 -0.31 16 7 C -0.07 -1.12 7.13 40.41 0.29 -0.84 16 8 C 0.62 11.89 7.98 86.61 0.69 12.58 16 9 O -0.54 -15.22 14.36 -4.10 -0.06 -15.28 16 10 N -0.65 -7.25 3.57 -838.28 -2.99 -10.24 16 11 C 0.08 0.00 7.14 83.10 0.59 0.59 16 12 C -0.13 -0.30 8.00 30.84 0.25 -0.05 16 13 C 0.13 1.25 4.09 41.80 0.17 1.42 16 14 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 15 C 0.12 2.59 5.40 86.38 0.47 3.06 16 16 N -0.70 -15.65 5.55 -463.06 -2.57 -18.22 16 17 C 0.53 19.05 7.85 87.66 0.69 19.73 16 18 O -0.57 -27.00 15.86 -3.04 -0.05 -27.05 16 19 C -0.13 -4.72 6.16 71.24 0.44 -4.28 16 20 S -0.16 -8.82 20.57 -56.49 -1.16 -9.98 16 21 C -0.54 -30.44 9.50 67.95 0.65 -29.80 16 22 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 23 C 0.01 0.58 5.49 84.86 0.47 1.04 16 24 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 25 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 26 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 27 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.73 6.61 -2.39 -0.02 1.72 16 31 H 0.09 1.39 8.14 -2.38 -0.02 1.38 16 32 H 0.10 -0.32 6.90 -2.39 -0.02 -0.33 16 33 H 0.13 -0.85 8.14 -2.38 -0.02 -0.87 16 34 H 0.14 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.09 0.54 7.95 -2.39 -0.02 0.52 16 36 H 0.05 1.43 7.04 -2.39 -0.02 1.42 16 37 H 0.06 1.45 7.88 -2.39 -0.02 1.43 16 38 H 0.42 5.31 8.48 -92.71 -0.79 4.53 16 39 H 0.12 3.79 8.14 -2.40 -0.02 3.77 16 40 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 41 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -92.34 366.79 -0.30 -92.64 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -1.06 Total: 6.49 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.71 Total: 4.10 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -5.71 Total: -95.94 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -0.11 Total: -42.33 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -92.34 -0.30 -92.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285834709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.576 kcal (2) G-P(sol) polarization free energy of solvation -92.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds