Wall clock time and date at job start Tue Mar 31 2020 22:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33326 * 126.81445 * 2 1 4 4 N 1.28512 * 109.43807 * 180.02562 * 3 2 1 5 5 N 1.28711 * 110.63889 * 0.02562 * 4 3 2 6 6 H 0.97004 * 126.03999 * 180.02562 * 5 4 3 7 7 C 1.37005 * 126.81524 * 180.34147 * 2 1 3 8 8 C 1.47240 * 127.18681 * 359.97438 * 7 2 1 9 9 O 1.21619 * 119.99938 * 0.18179 * 8 7 2 10 10 N 1.34775 * 119.99682 * 180.18303 * 8 7 2 11 11 C 1.47069 * 136.06000 * 354.77211 * 10 8 7 12 12 C 1.53761 * 87.88583 * 152.96706 * 11 10 8 13 13 C 1.47065 * 136.05557 * 175.15120 * 10 8 7 14 14 H 1.09001 * 113.46883 * 92.24130 * 13 10 8 15 15 C 1.53005 * 113.46785 * 321.86144 * 13 10 8 16 16 N 1.46497 * 109.47434 * 176.21509 * 15 13 10 17 17 C 1.34772 * 120.00248 * 184.96340 * 16 15 13 18 18 O 1.21281 * 120.00039 * 0.02562 * 17 16 15 19 19 C 1.50705 * 120.00093 * 180.02562 * 17 16 15 20 20 S 1.80998 * 109.47107 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00063 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99608 * 0.02562 * 21 20 19 23 23 C 1.38797 * 120.00256 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00386 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47057 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47447 * 120.00049 * 25 23 21 28 28 H 1.48501 * 109.47254 * 240.00312 * 25 23 21 29 29 H 1.09005 * 109.47244 * 89.96784 * 1 2 3 30 30 H 1.08993 * 109.47158 * 209.97324 * 1 2 3 31 31 H 1.09003 * 109.47310 * 329.97606 * 1 2 3 32 32 H 1.08992 * 113.46846 * 267.69975 * 11 10 8 33 33 H 1.08995 * 113.46252 * 38.14096 * 11 10 8 34 34 H 1.08996 * 114.39111 * 272.67806 * 12 11 10 35 35 H 1.09000 * 114.26718 * 139.79402 * 12 11 10 36 36 H 1.08998 * 109.46978 * 296.22092 * 15 13 10 37 37 H 1.09003 * 109.47096 * 56.21075 * 15 13 10 38 38 H 0.97005 * 119.99531 * 4.96792 * 16 15 13 39 39 H 1.09005 * 109.46942 * 300.00037 * 19 17 16 40 40 H 1.08992 * 109.46722 * 59.99939 * 19 17 16 41 41 H 0.96998 * 120.00202 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 -0.0005 5 7 3.6056 -0.6014 -0.0015 6 1 4.4212 -1.1266 -0.0016 7 6 2.3280 -1.0968 -0.0065 8 6 1.9222 -2.5122 -0.0144 9 8 0.7421 -2.8064 -0.0190 10 7 2.8585 -3.4816 -0.0166 11 6 4.3254 -3.5368 -0.1058 12 6 4.2664 -4.8592 0.6765 13 6 2.8624 -4.9501 0.0626 14 1 2.8446 -5.4374 -0.9122 15 6 1.8124 -5.5113 1.0237 16 7 1.8315 -6.9750 0.9674 17 6 0.9198 -7.6880 1.6579 18 8 0.0833 -7.1177 2.3257 19 6 0.9399 -9.1938 1.6004 20 16 -0.3986 -9.8545 2.6241 21 6 -0.1472 -11.5812 2.3794 22 1 0.6559 -11.9252 1.7446 23 6 -0.9807 -12.4992 3.0031 24 7 -1.9587 -12.0798 3.7780 25 14 -0.7138 -14.3297 2.7442 26 1 0.4430 -14.5378 1.8365 27 1 -0.4413 -14.9800 4.0511 28 1 -1.9312 -14.9267 2.1386 29 1 -0.3634 0.0006 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5142 32 1 4.6942 -3.6516 -1.1250 33 1 4.8237 -2.7325 0.4353 34 1 4.2736 -4.7418 1.7601 35 1 4.9598 -5.6214 0.3210 36 1 2.0370 -5.1837 2.0387 37 1 0.8255 -5.1494 0.7352 38 1 2.5004 -7.4311 0.4330 39 1 0.8031 -9.5198 0.5693 40 1 1.8969 -9.5588 1.9730 41 1 -2.5414 -12.7213 4.2136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285834710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:01 Heat of formation + Delta-G solvation = 67.030195 kcal Electronic energy + Delta-G solvation = -25822.278929 eV Core-core repulsion = 21867.488318 eV Total energy + Delta-G solvation = -3954.790611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.87917 -41.18688 -39.11334 -38.40262 -34.74919 -34.36177 -32.91421 -32.44730 -30.78192 -30.09049 -28.16472 -27.84340 -25.50948 -24.87733 -23.85050 -23.14343 -21.74108 -20.67612 -20.21040 -18.71693 -17.94167 -17.22069 -17.13866 -16.81363 -16.61315 -15.99412 -15.36050 -15.25955 -14.82386 -14.63047 -14.30073 -14.24220 -13.96967 -13.65141 -13.45370 -13.31444 -13.09666 -13.02336 -12.62254 -12.58265 -12.33965 -12.22486 -11.83215 -11.61203 -11.26224 -11.08831 -11.04840 -11.04057 -10.77590 -10.51169 -9.83538 -9.81985 -9.50087 -9.42403 -9.10026 -8.97817 -8.25036 -6.52145 -6.23527 -3.94327 0.35920 1.75712 1.78100 1.98548 2.51705 3.01635 3.05345 3.19983 3.26741 3.30909 3.46798 3.57287 3.69040 3.84878 4.16200 4.18230 4.22120 4.27704 4.40831 4.51168 4.56220 4.59447 4.93147 5.09163 5.11669 5.11838 5.26831 5.34419 5.35643 5.52737 5.58387 5.58853 5.85067 5.87774 5.91763 6.04424 6.09446 6.47400 6.89449 7.38481 7.57578 7.60731 7.76990 8.33347 8.55652 9.21768 10.83927 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.001877 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.643956 B =14917.750747 C =15669.188489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.066 3.934 3 N -0.267 5.267 4 N -0.045 5.045 5 N -0.377 5.377 6 H 0.447 0.553 7 C -0.068 4.068 8 C 0.623 3.377 9 O -0.494 6.494 10 N -0.644 5.644 11 C 0.088 3.912 12 C -0.146 4.146 13 C 0.130 3.870 14 H 0.107 0.893 15 C 0.114 3.886 16 N -0.737 5.737 17 C 0.532 3.468 18 O -0.512 6.512 19 C -0.152 4.152 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.782 20.075 -11.157 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 N -0.134 5.134 4 N -0.026 5.026 5 N -0.107 5.107 6 H 0.296 0.704 7 C -0.201 4.201 8 C 0.410 3.590 9 O -0.366 6.366 10 N -0.382 5.382 11 C -0.035 4.035 12 C -0.184 4.184 13 C 0.027 3.973 14 H 0.125 0.875 15 C -0.011 4.011 16 N -0.393 5.393 17 C 0.318 3.682 18 O -0.385 6.385 19 C -0.303 4.303 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.502 5.502 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.051 22.390 -9.910 29.277 hybrid contribution 1.696 -3.243 -1.297 3.882 sum 17.747 19.147 -11.207 28.411 Atomic orbital electron populations 1.20381 0.84470 1.04845 1.04064 1.22422 0.98804 0.86757 0.99386 1.74992 0.95096 1.25864 1.17477 1.78195 1.16169 0.92263 1.16020 1.45772 1.08865 1.07033 1.48996 0.70385 1.21968 0.85071 0.95918 1.17160 1.16196 0.84617 0.81262 0.76899 1.90921 1.15637 1.81234 1.48796 1.49584 1.07597 1.07271 1.73735 1.23237 0.80124 0.98618 1.01500 1.23642 0.96290 0.96802 1.01660 1.22939 0.94920 0.79550 0.99873 0.87518 1.21416 1.00061 0.80847 0.98749 1.45812 1.35300 1.05736 1.52417 1.20327 0.80097 0.89342 0.78421 1.90731 1.36290 1.71932 1.39560 1.23520 1.07199 0.93220 1.06337 1.85462 1.34993 1.03381 1.59517 1.22900 1.19443 0.91069 1.34956 0.90856 1.25004 0.94488 0.99659 0.94511 1.70028 1.16612 1.34890 1.28674 0.86108 0.78258 0.82926 0.78137 1.19632 1.20572 1.20565 0.89696 0.88506 0.89959 0.88280 0.91084 0.87686 0.87946 0.91186 0.89516 0.76867 0.89156 0.89161 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 9.92 36.00 0.36 -0.33 16 2 C 0.07 0.68 7.30 -82.39 -0.60 0.08 16 3 N -0.27 -2.99 12.35 33.51 0.41 -2.58 16 4 N -0.04 -0.43 13.35 60.35 0.81 0.37 16 5 N -0.38 -2.58 6.89 33.31 0.23 -2.35 16 6 H 0.45 1.35 5.95 -190.33 -1.13 0.21 16 7 C -0.07 -0.62 7.13 -82.33 -0.59 -1.20 16 8 C 0.62 6.20 7.93 -12.60 -0.10 6.10 16 9 O -0.49 -6.67 14.60 5.26 0.08 -6.59 16 10 N -0.64 -4.39 3.56 -178.63 -0.64 -5.02 16 11 C 0.09 0.20 7.62 -8.37 -0.06 0.13 16 12 C -0.15 -0.43 8.03 -26.08 -0.21 -0.64 16 13 C 0.13 0.83 4.06 -72.40 -0.29 0.53 16 14 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 15 C 0.11 1.27 5.46 -4.04 -0.02 1.25 16 16 N -0.74 -8.81 5.55 -60.29 -0.33 -9.14 16 17 C 0.53 9.59 7.85 -10.98 -0.09 9.51 16 18 O -0.51 -11.67 15.86 5.56 0.09 -11.58 16 19 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 25 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.94 6.63 -51.93 -0.34 0.60 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.07 0.03 6.12 -51.93 -0.32 -0.29 16 34 H 0.10 0.40 7.95 -51.93 -0.41 -0.01 16 35 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.07 0.84 7.90 -51.93 -0.41 0.43 16 37 H 0.09 1.28 7.16 -51.93 -0.37 0.91 16 38 H 0.40 3.22 8.48 -40.82 -0.35 2.88 16 39 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 40 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -39.09 366.57 -7.36 -46.45 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.84 Total: -2.03 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.19 Total: -0.09 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 1.21 Total: -44.00 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.16 Total: -18.17 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.09 -7.36 -46.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285834710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.484 kcal (2) G-P(sol) polarization free energy of solvation -39.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds