Wall clock time and date at job start Tue Mar 31 2020 22:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33326 * 126.81445 * 2 1 4 4 N 1.28512 * 109.43807 * 180.02562 * 3 2 1 5 5 N 1.28711 * 110.63889 * 0.02562 * 4 3 2 6 6 H 0.97004 * 126.03999 * 180.02562 * 5 4 3 7 7 C 1.37005 * 126.81524 * 180.34147 * 2 1 3 8 8 C 1.47240 * 127.18681 * 359.97438 * 7 2 1 9 9 O 1.21619 * 119.99938 * 0.18179 * 8 7 2 10 10 N 1.34775 * 119.99682 * 180.18303 * 8 7 2 11 11 C 1.47069 * 136.06000 * 354.77211 * 10 8 7 12 12 C 1.53761 * 87.88583 * 152.96706 * 11 10 8 13 13 C 1.47065 * 136.05557 * 175.15120 * 10 8 7 14 14 H 1.09001 * 113.46883 * 92.24130 * 13 10 8 15 15 C 1.53005 * 113.46785 * 321.86144 * 13 10 8 16 16 N 1.46497 * 109.47434 * 176.21509 * 15 13 10 17 17 C 1.34772 * 120.00248 * 184.96340 * 16 15 13 18 18 O 1.21281 * 120.00039 * 0.02562 * 17 16 15 19 19 C 1.50705 * 120.00093 * 180.02562 * 17 16 15 20 20 S 1.80998 * 109.47107 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00063 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99608 * 0.02562 * 21 20 19 23 23 C 1.38797 * 120.00256 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00386 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47057 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47447 * 120.00049 * 25 23 21 28 28 H 1.48501 * 109.47254 * 240.00312 * 25 23 21 29 29 H 1.09005 * 109.47244 * 89.96784 * 1 2 3 30 30 H 1.08993 * 109.47158 * 209.97324 * 1 2 3 31 31 H 1.09003 * 109.47310 * 329.97606 * 1 2 3 32 32 H 1.08992 * 113.46846 * 267.69975 * 11 10 8 33 33 H 1.08995 * 113.46252 * 38.14096 * 11 10 8 34 34 H 1.08996 * 114.39111 * 272.67806 * 12 11 10 35 35 H 1.09000 * 114.26718 * 139.79402 * 12 11 10 36 36 H 1.08998 * 109.46978 * 296.22092 * 15 13 10 37 37 H 1.09003 * 109.47096 * 56.21075 * 15 13 10 38 38 H 0.97005 * 119.99531 * 4.96792 * 16 15 13 39 39 H 1.09005 * 109.46942 * 300.00037 * 19 17 16 40 40 H 1.08992 * 109.46722 * 59.99939 * 19 17 16 41 41 H 0.96998 * 120.00202 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 -0.0005 5 7 3.6056 -0.6014 -0.0015 6 1 4.4212 -1.1266 -0.0016 7 6 2.3280 -1.0968 -0.0065 8 6 1.9222 -2.5122 -0.0144 9 8 0.7421 -2.8064 -0.0190 10 7 2.8585 -3.4816 -0.0166 11 6 4.3254 -3.5368 -0.1058 12 6 4.2664 -4.8592 0.6765 13 6 2.8624 -4.9501 0.0626 14 1 2.8446 -5.4374 -0.9122 15 6 1.8124 -5.5113 1.0237 16 7 1.8315 -6.9750 0.9674 17 6 0.9198 -7.6880 1.6579 18 8 0.0833 -7.1177 2.3257 19 6 0.9399 -9.1938 1.6004 20 16 -0.3986 -9.8545 2.6241 21 6 -0.1472 -11.5812 2.3794 22 1 0.6559 -11.9252 1.7446 23 6 -0.9807 -12.4992 3.0031 24 7 -1.9587 -12.0798 3.7780 25 14 -0.7138 -14.3297 2.7442 26 1 0.4430 -14.5378 1.8365 27 1 -0.4413 -14.9800 4.0511 28 1 -1.9312 -14.9267 2.1386 29 1 -0.3634 0.0006 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5142 32 1 4.6942 -3.6516 -1.1250 33 1 4.8237 -2.7325 0.4353 34 1 4.2736 -4.7418 1.7601 35 1 4.9598 -5.6214 0.3210 36 1 2.0370 -5.1837 2.0387 37 1 0.8255 -5.1494 0.7352 38 1 2.5004 -7.4311 0.4330 39 1 0.8031 -9.5198 0.5693 40 1 1.8969 -9.5588 1.9730 41 1 -2.5414 -12.7213 4.2136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285834710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:01 Heat of formation + Delta-G solvation = 34.600195 kcal Electronic energy + Delta-G solvation = -25823.685199 eV Core-core repulsion = 21867.488318 eV Total energy + Delta-G solvation = -3956.196881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.58404 -41.76739 -40.47091 -39.15342 -35.84939 -35.18373 -34.57514 -33.65815 -31.76445 -31.03000 -28.91811 -28.74795 -27.62781 -25.53922 -24.57034 -23.68265 -22.38890 -21.92512 -20.95877 -19.89967 -19.21117 -18.02010 -17.87890 -17.82998 -17.50913 -17.10741 -16.87403 -16.62497 -16.19333 -15.75208 -15.31461 -15.02745 -14.95586 -14.72246 -14.55855 -14.22358 -14.10432 -13.83870 -13.65056 -13.52640 -13.15089 -13.06949 -13.01451 -12.90020 -12.60951 -12.56452 -12.32287 -11.83502 -11.75191 -11.67566 -11.25478 -11.15285 -11.00837 -10.55924 -10.25138 -10.19769 -9.97884 -8.66538 -8.33866 -6.12219 -0.34428 1.01986 1.11448 1.28873 1.42522 1.42823 1.52042 1.59657 1.60968 1.80562 2.27312 2.32438 2.95589 3.00548 3.16284 3.27911 3.33478 3.56096 3.65677 3.81105 3.84293 3.98582 4.00290 4.20535 4.32509 4.38397 4.40190 4.52517 4.54799 4.65423 4.68507 4.83858 4.86118 4.98580 5.18259 5.21311 5.34695 5.43290 5.56076 6.21071 6.33127 6.48591 6.69458 7.04293 7.07517 7.24317 8.75618 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.001877 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.643956 B =14917.750747 C =15669.188489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.049 3.951 3 N -0.293 5.293 4 N -0.052 5.052 5 N -0.349 5.349 6 H 0.464 0.536 7 C -0.066 4.066 8 C 0.618 3.382 9 O -0.543 6.543 10 N -0.646 5.646 11 C 0.088 3.912 12 C -0.131 4.131 13 C 0.127 3.873 14 H 0.131 0.869 15 C 0.117 3.883 16 N -0.703 5.703 17 C 0.532 3.468 18 O -0.569 6.569 19 C -0.125 4.125 20 S -0.161 6.161 21 C -0.542 4.542 22 H 0.086 0.914 23 C 0.010 3.990 24 N -0.913 5.913 25 Si 1.001 2.999 26 H -0.253 1.253 27 H -0.275 1.275 28 H -0.276 1.276 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.422 0.578 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.839 18.970 -13.136 31.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 N -0.159 5.159 4 N -0.033 5.033 5 N -0.082 5.082 6 H 0.317 0.683 7 C -0.200 4.200 8 C 0.405 3.595 9 O -0.419 6.419 10 N -0.382 5.382 11 C -0.033 4.033 12 C -0.168 4.168 13 C 0.024 3.976 14 H 0.149 0.851 15 C -0.008 4.008 16 N -0.359 5.359 17 C 0.318 3.682 18 O -0.447 6.447 19 C -0.277 4.277 20 S 0.066 5.934 21 C -0.690 4.690 22 H 0.104 0.896 23 C -0.194 4.194 24 N -0.550 5.550 25 Si 0.822 3.178 26 H -0.177 1.177 27 H -0.200 1.200 28 H -0.202 1.202 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.150 0.850 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.156 0.844 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.261 0.739 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.248 21.286 -11.938 31.711 hybrid contribution 0.549 -2.837 -0.718 2.977 sum 20.797 18.449 -12.655 30.545 Atomic orbital electron populations 1.20353 0.84107 1.04523 1.04467 1.22686 0.99477 0.87152 0.99835 1.74971 0.95646 1.26592 1.18712 1.78116 1.15715 0.93205 1.16305 1.45700 1.08935 1.06350 1.47196 0.68263 1.21853 0.85645 0.95473 1.17027 1.16320 0.84516 0.81903 0.76715 1.90903 1.17786 1.81933 1.51270 1.49771 1.09514 1.06953 1.71959 1.23649 0.76941 0.98985 1.03704 1.23649 0.93822 0.98081 1.01278 1.23202 0.95122 0.79166 1.00086 0.85104 1.21410 0.99955 0.79769 0.99654 1.45405 1.33829 1.06138 1.50499 1.20175 0.80466 0.89032 0.78537 1.90722 1.38944 1.72662 1.42412 1.23345 1.04774 0.93865 1.05671 1.85716 1.40034 1.05001 1.62600 1.23239 1.19755 0.91004 1.34998 0.89551 1.26171 0.93969 1.05353 0.93954 1.70203 1.17907 1.36824 1.30027 0.84877 0.78713 0.75742 0.78429 1.17691 1.20035 1.20173 0.88969 0.90005 0.88973 0.84954 0.88940 0.88514 0.84386 0.92415 0.93590 0.73950 0.86894 0.86472 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 9.92 71.24 0.71 -0.70 16 2 C 0.05 1.02 7.30 42.04 0.31 1.32 16 3 N -0.29 -6.49 12.35 -47.88 -0.59 -7.09 16 4 N -0.05 -0.94 13.35 37.02 0.49 -0.44 16 5 N -0.35 -4.11 6.89 -48.52 -0.33 -4.44 16 6 H 0.46 1.28 5.95 -219.90 -1.31 -0.03 16 7 C -0.07 -1.15 7.13 40.41 0.29 -0.86 16 8 C 0.62 12.11 7.93 86.61 0.69 12.79 16 9 O -0.54 -15.49 14.60 -4.09 -0.06 -15.55 16 10 N -0.65 -7.35 3.56 -837.31 -2.98 -10.33 16 11 C 0.09 -0.02 7.62 83.27 0.63 0.61 16 12 C -0.13 -0.17 8.03 31.02 0.25 0.08 16 13 C 0.13 1.24 4.06 41.79 0.17 1.41 16 14 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 15 C 0.12 2.55 5.46 86.38 0.47 3.02 16 16 N -0.70 -15.54 5.55 -463.06 -2.57 -18.11 16 17 C 0.53 19.04 7.85 87.66 0.69 19.73 16 18 O -0.57 -27.06 15.86 -3.03 -0.05 -27.11 16 19 C -0.13 -4.71 6.16 71.24 0.44 -4.27 16 20 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 21 C -0.54 -30.44 9.50 67.95 0.65 -29.79 16 22 H 0.09 4.44 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.56 5.49 84.86 0.47 1.03 16 24 N -0.91 -56.11 13.22 21.65 0.29 -55.83 16 25 Si 1.00 43.01 29.55 68.60 2.03 45.04 16 26 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 28 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 29 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.08 1.76 6.63 -2.39 -0.02 1.75 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.13 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H 0.09 -0.38 6.12 -2.39 -0.01 -0.39 16 34 H 0.10 0.38 7.95 -2.39 -0.02 0.36 16 35 H 0.14 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.06 1.41 7.90 -2.39 -0.02 1.39 16 37 H 0.05 1.43 7.16 -2.39 -0.02 1.41 16 38 H 0.42 5.21 8.48 -92.70 -0.79 4.43 16 39 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 40 H 0.12 3.78 8.14 -2.40 -0.02 3.76 16 41 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -92.72 366.57 -0.18 -92.90 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -0.99 Total: 6.60 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.75 Total: 4.38 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -5.70 Total: -96.23 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.11 Total: -42.66 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -92.72 -0.18 -92.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285834710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.499 kcal (2) G-P(sol) polarization free energy of solvation -92.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds