Wall clock time and date at job start Tue Mar 31 2020 22:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 110.88925 * 2 1 4 4 C 1.34777 * 119.99873 * 303.88327 * 3 2 1 5 5 O 1.21557 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.47866 * 120.00200 * 180.02562 * 4 3 2 7 7 N 1.34543 * 126.05205 * 180.02562 * 6 4 3 8 8 C 1.30872 * 107.27318 * 179.97438 * 7 6 4 9 9 N 1.34583 * 107.62365 * 359.97438 * 8 7 6 10 10 H 0.96997 * 125.75227 * 179.97438 * 9 8 7 11 11 N 1.28858 * 108.50385 * 359.73354 * 9 8 7 12 12 C 1.55163 * 111.00489 * 123.88037 * 2 1 3 13 13 C 1.54317 * 102.94196 * 153.61450 * 12 2 1 14 14 N 1.47026 * 107.27526 * 337.80656 * 13 12 2 15 15 C 1.34773 * 125.64941 * 178.98511 * 14 13 12 16 16 O 1.21280 * 119.99618 * 179.97438 * 15 14 13 17 17 C 1.50694 * 120.00276 * 359.97438 * 15 14 13 18 18 S 1.80997 * 109.47459 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00108 * 179.97438 * 18 17 15 20 20 H 1.07991 * 120.00159 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99879 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00264 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00126 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47108 * 59.99508 * 23 21 19 25 25 H 1.48497 * 109.46972 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46953 * 299.99909 * 23 21 19 27 27 C 1.47423 * 108.69794 * 358.94393 * 14 13 12 28 28 H 1.09003 * 109.46934 * 59.29462 * 1 2 3 29 29 H 1.09000 * 109.47117 * 179.29883 * 1 2 3 30 30 H 1.08999 * 109.46937 * 299.29936 * 1 2 3 31 31 H 0.96995 * 120.00050 * 123.60441 * 3 2 1 32 32 H 1.08003 * 126.19054 * 180.02562 * 8 7 6 33 33 H 1.08999 * 110.71829 * 271.97838 * 12 2 1 34 34 H 1.08998 * 110.71488 * 35.24670 * 12 2 1 35 35 H 1.09000 * 109.88592 * 97.22861 * 13 12 2 36 36 H 1.09007 * 109.88201 * 218.38984 * 13 12 2 37 37 H 1.09004 * 109.47204 * 299.99542 * 17 15 14 38 38 H 1.08998 * 109.47270 * 59.99721 * 17 15 14 39 39 H 0.96997 * 120.00615 * 180.02562 * 22 21 19 40 40 H 1.09005 * 110.36368 * 265.28503 * 27 14 13 41 41 H 1.09006 * 110.36594 * 142.96710 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0524 1.3688 0.0000 4 6 1.6847 2.2304 -0.9690 5 8 0.9200 1.8716 -1.8432 6 6 2.2123 3.6117 -0.9694 7 7 1.9277 4.5677 -1.8722 8 6 2.5891 5.6416 -1.5226 9 7 3.2802 5.3488 -0.4056 10 1 3.8605 5.9576 0.0777 11 7 3.0373 4.1251 -0.0832 12 6 2.0862 -0.8075 1.2026 13 6 3.4678 -1.2730 0.6969 14 7 3.4281 -1.2422 -0.7725 15 6 4.4490 -1.5605 -1.5927 16 8 4.3025 -1.4991 -2.7951 17 6 5.7724 -1.9925 -1.0159 18 16 6.9295 -2.3491 -2.3614 19 6 8.3495 -2.8155 -1.4282 20 1 8.3106 -2.8146 -0.3490 21 6 9.5184 -3.1830 -2.0803 22 7 9.5659 -3.1836 -3.3958 23 14 11.0236 -3.6781 -1.0911 24 1 10.6968 -4.8567 -0.2489 25 1 12.1323 -4.0237 -2.0166 26 1 11.4381 -2.5480 -0.2215 27 6 2.0861 -0.8065 -1.1999 28 1 -0.3633 0.5248 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5029 0.8962 31 1 2.6596 1.6561 0.6996 32 1 2.5810 6.5912 -2.0370 33 1 2.1915 -0.1693 2.0799 34 1 1.4471 -1.6630 1.4212 35 1 4.2425 -0.5983 1.0610 36 1 3.6658 -2.2882 1.0412 37 1 6.1749 -1.1944 -0.3922 38 1 5.6304 -2.8889 -0.4123 39 1 10.3827 -3.4408 -3.8515 40 1 1.4532 -1.6706 -1.4022 41 1 2.1568 -0.1719 -2.0834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001286103805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:06 Heat of formation + Delta-G solvation = 29.385083 kcal Electronic energy + Delta-G solvation = -26795.428323 eV Core-core repulsion = 22839.005298 eV Total energy + Delta-G solvation = -3956.423025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.81897 -40.71545 -39.03920 -37.35935 -34.39124 -33.75924 -32.46358 -32.41411 -31.09364 -29.80069 -29.37896 -26.17320 -25.43869 -25.11689 -23.40694 -23.12923 -21.22814 -19.93030 -19.42784 -19.15171 -17.86824 -17.51960 -16.71441 -16.70260 -16.39942 -15.75492 -15.19765 -14.91387 -14.79891 -14.70817 -14.36406 -14.00656 -13.90916 -13.67971 -12.88330 -12.80464 -12.61731 -12.59222 -12.47291 -12.34565 -11.80409 -11.69491 -11.54892 -11.18851 -11.06851 -11.03612 -11.02721 -10.83302 -10.76556 -10.16867 -10.09187 -9.81950 -9.47765 -9.29635 -9.04956 -8.42959 -8.21131 -6.48488 -6.20082 -3.90792 0.99879 1.79383 2.20488 2.60116 2.94172 3.11072 3.13693 3.23421 3.26079 3.29440 3.63851 3.85374 4.05561 4.10420 4.21476 4.32606 4.51380 4.60349 4.93813 5.05340 5.12778 5.14572 5.35576 5.40017 5.51960 5.54149 5.58250 5.60057 5.63873 5.72398 5.85668 5.92570 5.97024 6.04404 6.15087 6.26608 6.30860 6.45412 7.12379 7.59921 7.61077 7.71591 7.93424 8.36022 8.61729 9.24566 10.87281 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.002822 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.551848 B = 9920.209296 C =11056.047543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 N -0.699 5.699 4 C 0.619 3.381 5 O -0.500 6.500 6 C 0.153 3.847 7 N -0.460 5.460 8 C 0.198 3.802 9 N -0.397 5.397 10 H 0.452 0.548 11 N -0.276 5.276 12 C -0.130 4.130 13 C 0.099 3.901 14 N -0.625 5.625 15 C 0.547 3.453 16 O -0.512 6.512 17 C -0.145 4.145 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.103 3.897 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.408 0.592 32 H 0.232 0.768 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.077 0.923 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.023 16.244 14.580 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.076 3.924 3 N -0.353 5.353 4 C 0.400 3.600 5 O -0.370 6.370 6 C -0.128 4.128 7 N -0.185 5.185 8 C -0.100 4.100 9 N -0.120 5.120 10 H 0.299 0.701 11 N -0.118 5.118 12 C -0.168 4.168 13 C -0.024 4.024 14 N -0.363 5.363 15 C 0.336 3.664 16 O -0.386 6.386 17 C -0.296 4.296 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.021 4.021 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.244 0.756 32 H 0.248 0.752 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.703 15.462 12.065 26.421 hybrid contribution 2.063 0.581 2.645 3.404 sum -15.640 16.043 14.710 26.802 Atomic orbital electron populations 1.22081 0.92071 1.03300 1.04101 1.21478 0.94635 0.80369 0.95901 1.45616 1.49479 1.11178 1.28981 1.16235 0.80647 0.81132 0.81974 1.90815 1.34019 1.76250 1.35939 1.23837 0.99493 0.97468 0.91976 1.71318 1.22825 0.98729 1.25585 1.26778 0.93133 1.00942 0.89149 1.45122 1.35680 1.09377 1.21864 0.70093 1.74239 1.17758 0.94922 1.24888 1.22996 0.96384 1.00454 0.97004 1.22016 0.97336 1.01988 0.81075 1.48471 1.12210 1.69302 1.06310 1.20016 0.84005 0.76287 0.86130 1.90725 1.82216 1.51334 1.14323 1.23497 0.96293 1.03768 1.06033 1.85445 1.04981 1.87277 1.05652 1.22818 0.98062 1.52773 0.94742 0.91018 1.24992 0.98460 0.94979 0.95138 1.70011 1.28213 1.44942 1.07089 0.86228 0.80848 0.79007 0.79426 1.19926 1.20806 1.19978 1.22555 0.83594 0.98187 0.97795 0.89518 0.90966 0.91951 0.75640 0.75194 0.89193 0.88406 0.91266 0.90778 0.89469 0.89304 0.92126 0.90448 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.52 37.16 0.32 -1.06 16 2 C 0.16 1.61 0.82 -129.67 -0.11 1.51 16 3 N -0.70 -7.39 5.18 -46.54 -0.24 -7.63 16 4 C 0.62 8.40 7.20 -12.32 -0.09 8.31 16 5 O -0.50 -8.24 13.94 5.32 0.07 -8.16 16 6 C 0.15 1.93 7.96 -156.36 -1.24 0.68 16 7 N -0.46 -5.65 11.41 -12.37 -0.14 -5.79 16 8 C 0.20 1.31 13.14 -90.48 -1.19 0.12 16 9 N -0.40 -2.31 6.93 29.57 0.20 -2.11 16 10 H 0.45 0.60 8.96 -190.21 -1.70 -1.11 16 11 N -0.28 -2.70 11.98 32.07 0.38 -2.31 16 12 C -0.13 -0.93 5.97 -24.90 -0.15 -1.08 16 13 C 0.10 1.02 6.48 -3.07 -0.02 1.00 16 14 N -0.63 -9.49 3.33 -170.52 -0.57 -10.05 16 15 C 0.55 11.18 7.87 -10.99 -0.09 11.09 16 16 O -0.51 -12.73 16.12 5.56 0.09 -12.64 16 17 C -0.15 -3.07 5.35 36.00 0.19 -2.88 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.45 9.50 30.94 0.29 -15.15 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 23 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.10 1.42 5.84 -2.53 -0.01 1.41 16 28 H 0.09 0.99 6.00 -51.93 -0.31 0.68 16 29 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.41 3.57 8.21 -40.82 -0.34 3.24 16 32 H 0.23 0.28 8.06 -52.48 -0.42 -0.14 16 33 H 0.09 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.10 0.55 8.04 -51.93 -0.42 0.14 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 38 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 41 H 0.09 1.57 6.76 -51.93 -0.35 1.22 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -41.61 364.80 -9.85 -51.46 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.46 Total: -1.08 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -2.19 Total: 5.98 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.37 Total: -53.64 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.16 Total: -20.81 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -41.61 -9.85 -51.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286103805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.847 kcal (2) G-P(sol) polarization free energy of solvation -41.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds