Wall clock time and date at job start Tue Mar 31 2020 22:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 110.88925 * 2 1 4 4 C 1.34777 * 119.99873 * 303.88327 * 3 2 1 5 5 O 1.21557 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.47866 * 120.00200 * 180.02562 * 4 3 2 7 7 N 1.34543 * 126.05205 * 180.02562 * 6 4 3 8 8 C 1.30872 * 107.27318 * 179.97438 * 7 6 4 9 9 N 1.34583 * 107.62365 * 359.97438 * 8 7 6 10 10 H 0.96997 * 125.75227 * 179.97438 * 9 8 7 11 11 N 1.28858 * 108.50385 * 359.73354 * 9 8 7 12 12 C 1.55163 * 111.00489 * 123.88037 * 2 1 3 13 13 C 1.54317 * 102.94196 * 153.61450 * 12 2 1 14 14 N 1.47026 * 107.27526 * 337.80656 * 13 12 2 15 15 C 1.34773 * 125.64941 * 178.98511 * 14 13 12 16 16 O 1.21280 * 119.99618 * 179.97438 * 15 14 13 17 17 C 1.50694 * 120.00276 * 359.97438 * 15 14 13 18 18 S 1.80997 * 109.47459 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00108 * 179.97438 * 18 17 15 20 20 H 1.07991 * 120.00159 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99879 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00264 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00126 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47108 * 59.99508 * 23 21 19 25 25 H 1.48497 * 109.46972 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46953 * 299.99909 * 23 21 19 27 27 C 1.47423 * 108.69794 * 358.94393 * 14 13 12 28 28 H 1.09003 * 109.46934 * 59.29462 * 1 2 3 29 29 H 1.09000 * 109.47117 * 179.29883 * 1 2 3 30 30 H 1.08999 * 109.46937 * 299.29936 * 1 2 3 31 31 H 0.96995 * 120.00050 * 123.60441 * 3 2 1 32 32 H 1.08003 * 126.19054 * 180.02562 * 8 7 6 33 33 H 1.08999 * 110.71829 * 271.97838 * 12 2 1 34 34 H 1.08998 * 110.71488 * 35.24670 * 12 2 1 35 35 H 1.09000 * 109.88592 * 97.22861 * 13 12 2 36 36 H 1.09007 * 109.88201 * 218.38984 * 13 12 2 37 37 H 1.09004 * 109.47204 * 299.99542 * 17 15 14 38 38 H 1.08998 * 109.47270 * 59.99721 * 17 15 14 39 39 H 0.96997 * 120.00615 * 180.02562 * 22 21 19 40 40 H 1.09005 * 110.36368 * 265.28503 * 27 14 13 41 41 H 1.09006 * 110.36594 * 142.96710 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0524 1.3688 0.0000 4 6 1.6847 2.2304 -0.9690 5 8 0.9200 1.8716 -1.8432 6 6 2.2123 3.6117 -0.9694 7 7 1.9277 4.5677 -1.8722 8 6 2.5891 5.6416 -1.5226 9 7 3.2802 5.3488 -0.4056 10 1 3.8605 5.9576 0.0777 11 7 3.0373 4.1251 -0.0832 12 6 2.0862 -0.8075 1.2026 13 6 3.4678 -1.2730 0.6969 14 7 3.4281 -1.2422 -0.7725 15 6 4.4490 -1.5605 -1.5927 16 8 4.3025 -1.4991 -2.7951 17 6 5.7724 -1.9925 -1.0159 18 16 6.9295 -2.3491 -2.3614 19 6 8.3495 -2.8155 -1.4282 20 1 8.3106 -2.8146 -0.3490 21 6 9.5184 -3.1830 -2.0803 22 7 9.5659 -3.1836 -3.3958 23 14 11.0236 -3.6781 -1.0911 24 1 10.6968 -4.8567 -0.2489 25 1 12.1323 -4.0237 -2.0166 26 1 11.4381 -2.5480 -0.2215 27 6 2.0861 -0.8065 -1.1999 28 1 -0.3633 0.5248 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5029 0.8962 31 1 2.6596 1.6561 0.6996 32 1 2.5810 6.5912 -2.0370 33 1 2.1915 -0.1693 2.0799 34 1 1.4471 -1.6630 1.4212 35 1 4.2425 -0.5983 1.0610 36 1 3.6658 -2.2882 1.0412 37 1 6.1749 -1.1944 -0.3922 38 1 5.6304 -2.8889 -0.4123 39 1 10.3827 -3.4408 -3.8515 40 1 1.4532 -1.6706 -1.4022 41 1 2.1568 -0.1719 -2.0834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001286103805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:06 Heat of formation + Delta-G solvation = -3.772534 kcal Electronic energy + Delta-G solvation = -26796.866145 eV Core-core repulsion = 22839.005298 eV Total energy + Delta-G solvation = -3957.860847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.49362 -41.74235 -40.34735 -38.60042 -35.49847 -34.59770 -34.48562 -33.36956 -31.96526 -30.94140 -30.58591 -27.78795 -27.06873 -26.02835 -24.25093 -23.87306 -22.05402 -20.99316 -20.61045 -19.95049 -19.56588 -18.49852 -18.04581 -17.64494 -17.43814 -16.96808 -16.89168 -16.26198 -15.85741 -15.80348 -15.72227 -15.46403 -15.01971 -14.64502 -14.48484 -14.03326 -13.86808 -13.45552 -13.36524 -13.27840 -13.20794 -13.16922 -12.86569 -12.64894 -12.48518 -12.38362 -11.96243 -11.81726 -11.76534 -11.58477 -11.13667 -11.11354 -11.03045 -10.80086 -10.35908 -10.29351 -9.68180 -8.70829 -8.35150 -6.15156 0.21722 1.12186 1.21876 1.43666 1.44096 1.52581 1.54506 1.58133 1.97128 2.05460 2.21373 2.26526 2.98726 3.08236 3.19134 3.33906 3.49065 3.50524 3.83493 3.87456 4.02485 4.18017 4.27860 4.32154 4.40716 4.47192 4.67636 4.73651 4.81228 4.83146 4.84997 4.97582 5.06772 5.21818 5.27385 5.35993 5.39970 5.43758 5.90734 6.18509 6.29256 6.37164 6.90759 7.05115 7.06385 7.08418 8.74093 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.002822 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.551848 B = 9920.209296 C =11056.047543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.166 3.834 3 N -0.687 5.687 4 C 0.610 3.390 5 O -0.543 6.543 6 C 0.119 3.881 7 N -0.518 5.518 8 C 0.218 3.782 9 N -0.378 5.378 10 H 0.473 0.527 11 N -0.274 5.274 12 C -0.111 4.111 13 C 0.084 3.916 14 N -0.614 5.614 15 C 0.541 3.459 16 O -0.573 6.573 17 C -0.114 4.114 18 S -0.158 6.158 19 C -0.545 4.545 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.260 1.260 27 C 0.097 3.903 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.418 0.582 32 H 0.283 0.717 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.271 0.729 40 H 0.086 0.914 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 17.071 19.018 30.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.080 3.920 3 N -0.340 5.340 4 C 0.393 3.607 5 O -0.417 6.417 6 C -0.160 4.160 7 N -0.243 5.243 8 C -0.079 4.079 9 N -0.104 5.104 10 H 0.325 0.675 11 N -0.118 5.118 12 C -0.148 4.148 13 C -0.037 4.037 14 N -0.348 5.348 15 C 0.330 3.670 16 O -0.452 6.452 17 C -0.265 4.265 18 S 0.069 5.931 19 C -0.693 4.693 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.185 1.185 27 C -0.027 4.027 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.256 0.744 32 H 0.298 0.702 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.372 16.324 16.616 29.058 hybrid contribution 1.869 0.463 1.298 2.323 sum -15.503 16.786 17.914 29.035 Atomic orbital electron populations 1.22035 0.90867 1.04397 1.03618 1.21570 0.95402 0.79743 0.95322 1.45590 1.49038 1.11018 1.28364 1.16603 0.80230 0.82046 0.81866 1.90784 1.36048 1.77252 1.37599 1.23702 1.01375 0.97514 0.93442 1.71247 1.25423 1.00444 1.27223 1.27655 0.90750 1.01096 0.88424 1.45159 1.35118 1.08463 1.21669 0.67527 1.74129 1.16927 0.96401 1.24325 1.23072 0.94215 1.01254 0.96282 1.22502 1.00056 1.03691 0.77495 1.48408 1.11286 1.66718 1.08413 1.19915 0.84864 0.76480 0.85767 1.90700 1.83258 1.54346 1.16901 1.23267 0.94802 1.05328 1.03149 1.85714 1.08180 1.87903 1.11290 1.23156 0.98096 1.52802 0.95227 0.89660 1.26190 1.02228 0.94549 0.96295 1.70195 1.29305 1.46104 1.09347 0.84961 0.75809 0.79234 0.77712 1.18455 1.20482 1.18452 1.22696 0.83190 0.98489 0.98296 0.92717 0.88987 0.89749 0.74417 0.70208 0.85611 0.85720 0.90062 0.89021 0.87506 0.87049 0.91984 0.89551 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.52 71.98 0.61 -1.80 16 2 C 0.17 3.03 0.82 4.99 0.00 3.03 16 3 N -0.69 -14.02 5.18 -419.44 -2.17 -16.19 16 4 C 0.61 17.28 7.20 86.79 0.63 17.91 16 5 O -0.54 -19.36 13.94 -3.89 -0.05 -19.42 16 6 C 0.12 3.06 7.96 137.13 1.09 4.15 16 7 N -0.52 -12.84 11.41 -193.03 -2.20 -15.04 16 8 C 0.22 2.48 13.14 180.30 2.37 4.84 16 9 N -0.38 -3.61 6.93 -60.38 -0.42 -4.03 16 10 H 0.47 -0.11 8.96 -219.80 -1.97 -2.09 16 11 N -0.27 -5.05 11.98 -52.44 -0.63 -5.68 16 12 C -0.11 -1.08 5.97 31.78 0.19 -0.89 16 13 C 0.08 1.44 6.48 86.73 0.56 2.01 16 14 N -0.61 -18.24 3.33 -811.80 -2.70 -20.94 16 15 C 0.54 22.60 7.87 87.66 0.69 23.29 16 16 O -0.57 -30.29 16.12 -3.03 -0.05 -30.34 16 17 C -0.11 -4.80 5.35 71.23 0.38 -4.42 16 18 S -0.16 -9.14 20.57 -56.49 -1.16 -10.30 16 19 C -0.55 -31.53 9.50 67.95 0.65 -30.89 16 20 H 0.09 4.52 7.80 -2.92 -0.02 4.49 16 21 C 0.01 0.69 5.49 84.86 0.47 1.15 16 22 N -0.91 -57.09 13.22 21.65 0.29 -56.80 16 23 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 26 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 27 C 0.10 2.74 5.84 86.85 0.51 3.25 16 28 H 0.05 1.28 6.00 -2.39 -0.01 1.27 16 29 H 0.09 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.42 6.55 8.21 -92.71 -0.76 5.79 16 32 H 0.28 -0.30 8.06 -2.91 -0.02 -0.32 16 33 H 0.13 0.48 8.08 -2.39 -0.02 0.46 16 34 H 0.12 0.69 8.04 -2.39 -0.02 0.67 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 38 H 0.11 4.15 8.14 -2.40 -0.02 4.13 16 39 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.09 2.25 8.03 -2.38 -0.02 2.24 16 41 H 0.04 1.66 6.76 -2.38 -0.02 1.64 16 Total: -1.00 -100.13 364.80 -0.56 -100.69 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -1.63 Total: 10.79 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 8.14 Total: 21.63 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -7.83 Total: -118.70 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.10 Total: -49.76 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.16 Total: -10.30 kcal Total: -100.13 -0.56 -100.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286103805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.915 kcal (2) G-P(sol) polarization free energy of solvation -100.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds