Wall clock time and date at job start Tue Mar 31 2020 22:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 110.88920 * 2 1 4 4 C 1.34777 * 120.00263 * 62.42000 * 3 2 1 5 5 O 1.21562 * 119.99565 * 0.02562 * 4 3 2 6 6 C 1.47867 * 120.00146 * 180.02562 * 4 3 2 7 7 N 1.34544 * 126.04673 * 0.02778 * 6 4 3 8 8 C 1.30872 * 107.26797 * 179.97438 * 7 6 4 9 9 N 1.34582 * 107.62602 * 359.97438 * 8 7 6 10 10 H 0.97006 * 125.75074 * 180.02562 * 9 8 7 11 11 N 1.28856 * 108.50426 * 359.97438 * 9 8 7 12 12 C 1.55156 * 111.03863 * 236.09149 * 2 1 3 13 13 C 1.54322 * 102.94485 * 206.41196 * 12 2 1 14 14 N 1.47030 * 107.26693 * 22.19402 * 13 12 2 15 15 C 1.34780 * 125.64549 * 181.09414 * 14 13 12 16 16 O 1.21275 * 119.99970 * 179.97438 * 15 14 13 17 17 C 1.50708 * 119.99691 * 359.96063 * 15 14 13 18 18 S 1.81001 * 109.46463 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99753 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00260 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00379 * 180.02562 * 19 18 17 22 22 N 1.31636 * 119.99665 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00177 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47205 * 59.99898 * 23 21 19 25 25 H 1.48507 * 109.47133 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47276 * 299.99460 * 23 21 19 27 27 C 1.47414 * 108.70598 * 1.05924 * 14 13 12 28 28 H 1.08996 * 109.46628 * 60.70398 * 1 2 3 29 29 H 1.09000 * 109.46993 * 180.70407 * 1 2 3 30 30 H 1.08996 * 109.47062 * 300.70542 * 1 2 3 31 31 H 0.97001 * 119.99931 * 242.42935 * 3 2 1 32 32 H 1.07997 * 126.18802 * 179.97438 * 8 7 6 33 33 H 1.09003 * 110.72058 * 324.77575 * 12 2 1 34 34 H 1.08993 * 110.71893 * 88.04672 * 12 2 1 35 35 H 1.08992 * 109.88580 * 262.77963 * 13 12 2 36 36 H 1.08998 * 110.01436 * 141.68092 * 13 12 2 37 37 H 1.08996 * 109.47347 * 299.99430 * 17 15 14 38 38 H 1.08997 * 109.47062 * 60.00094 * 17 15 14 39 39 H 0.96992 * 119.99742 * 179.97438 * 22 21 19 40 40 H 1.09004 * 110.36899 * 217.03582 * 27 14 13 41 41 H 1.09001 * 110.36713 * 94.70772 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7878 2.1910 1.0345 5 8 1.1161 1.7967 1.9679 6 6 2.3146 3.5726 1.0342 7 7 3.0666 4.1331 0.0695 8 6 3.3255 5.3605 0.4426 9 7 2.7339 5.5573 1.6352 10 1 2.7579 6.3784 2.1512 11 7 2.1293 4.4716 1.9760 12 6 2.0871 -0.8079 -1.2018 13 6 3.4684 -1.2733 -0.6951 14 7 3.4274 -1.2420 0.7743 15 6 4.4482 -1.5586 1.5955 16 8 4.3012 -1.4962 2.7976 17 6 5.7723 -1.9906 1.0196 18 16 6.9293 -2.3432 2.3661 19 6 8.3495 -2.8116 1.4342 20 1 8.3107 -2.8135 0.3549 21 6 9.5183 -3.1781 2.0872 22 7 9.5658 -3.1753 3.4027 23 14 11.0241 -3.6738 1.0992 24 1 11.4386 -2.5447 0.2285 25 1 12.1329 -4.0170 2.0256 26 1 10.6980 -4.8536 0.2583 27 6 2.0853 -0.8062 1.2007 28 1 -0.3632 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 2.5886 1.6831 -0.7447 32 1 3.9086 6.0844 -0.1072 33 1 1.4482 -1.6635 -1.4207 34 1 2.1931 -0.1700 -2.0793 35 1 4.2433 -0.5987 -1.0587 36 1 3.6693 -2.2880 -1.0387 37 1 5.6311 -2.8878 0.4171 38 1 6.1744 -1.1929 0.3950 39 1 10.3823 -3.4317 3.8590 40 1 2.1553 -0.1713 2.0840 41 1 1.4522 -1.6702 1.4027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001286103806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:08 Heat of formation + Delta-G solvation = -4.815095 kcal Electronic energy + Delta-G solvation = -26837.883830 eV Core-core repulsion = 22879.977773 eV Total energy + Delta-G solvation = -3957.906056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.48920 -41.74083 -40.32530 -38.58694 -35.53309 -34.60982 -34.58556 -32.84331 -32.25487 -30.94519 -30.59315 -27.78256 -27.07068 -26.06198 -24.17839 -23.86728 -22.01763 -20.98249 -20.65695 -19.96547 -19.59039 -18.34528 -17.90274 -17.63078 -17.42758 -17.01077 -16.88781 -16.46293 -15.99814 -15.80752 -15.63426 -15.24389 -15.04141 -14.63580 -14.46396 -14.02327 -13.86663 -13.45008 -13.35025 -13.25116 -13.18558 -13.15939 -12.85911 -12.64168 -12.48375 -12.38195 -11.91278 -11.77855 -11.75922 -11.63345 -11.18799 -11.13029 -11.02041 -10.84798 -10.32028 -10.28149 -9.67484 -8.70494 -8.34715 -6.14742 0.25959 1.11689 1.22470 1.44301 1.44640 1.47676 1.54168 1.55337 2.06402 2.16671 2.22915 2.27089 2.99192 3.01811 3.16770 3.33614 3.51175 3.58253 3.84573 3.88349 4.02216 4.18970 4.29284 4.33890 4.41364 4.49511 4.70726 4.74477 4.82209 4.83972 4.86708 4.98563 5.08274 5.20833 5.28270 5.35825 5.40478 5.44693 5.90347 6.19050 6.31402 6.38579 6.90298 7.05548 7.06715 7.09254 8.74601 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.002869 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.562620 B = 9758.485594 C =10913.091400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.165 3.835 3 N -0.682 5.682 4 C 0.610 3.390 5 O -0.550 6.550 6 C 0.121 3.879 7 N -0.507 5.507 8 C 0.222 3.778 9 N -0.385 5.385 10 H 0.471 0.529 11 N -0.286 5.286 12 C -0.110 4.110 13 C 0.084 3.916 14 N -0.614 5.614 15 C 0.541 3.459 16 O -0.574 6.574 17 C -0.114 4.114 18 S -0.158 6.158 19 C -0.545 4.545 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.260 1.260 27 C 0.094 3.906 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.421 0.579 32 H 0.287 0.713 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.271 0.729 40 H 0.048 0.952 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.301 17.278 -18.594 30.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.079 3.921 3 N -0.335 5.335 4 C 0.392 3.608 5 O -0.425 6.425 6 C -0.159 4.159 7 N -0.234 5.234 8 C -0.075 4.075 9 N -0.111 5.111 10 H 0.322 0.678 11 N -0.127 5.127 12 C -0.148 4.148 13 C -0.037 4.037 14 N -0.348 5.348 15 C 0.329 3.671 16 O -0.453 6.453 17 C -0.265 4.265 18 S 0.069 5.931 19 C -0.693 4.693 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.550 5.550 23 Si 0.823 3.177 24 H -0.184 1.184 25 H -0.205 1.205 26 H -0.184 1.184 27 C -0.030 4.030 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.259 0.741 32 H 0.302 0.698 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.128 16.594 -15.772 29.202 hybrid contribution 1.599 0.576 -0.847 1.899 sum -16.529 17.170 -16.619 29.056 Atomic orbital electron populations 1.21998 0.90860 1.04381 1.03341 1.21585 0.95337 0.79793 0.95399 1.45523 1.54034 1.11839 1.22102 1.16592 0.79336 0.82180 0.82645 1.90803 1.39899 1.75720 1.36115 1.23673 1.03755 0.97215 0.91281 1.71239 1.16440 1.07953 1.27815 1.27674 0.97786 0.95413 0.86643 1.45257 1.35483 1.12297 1.18018 0.67790 1.74281 1.17941 0.95468 1.24998 1.23065 0.94141 1.01251 0.96301 1.22496 1.00130 1.03619 0.77490 1.48414 1.11298 1.66685 1.08420 1.19922 0.84882 0.76499 0.85763 1.90695 1.83270 1.54388 1.16925 1.23267 0.94799 1.05313 1.03140 1.85706 1.08172 1.87934 1.11307 1.23161 0.98102 1.52774 0.95240 0.89656 1.26197 1.02235 0.94545 0.96297 1.70199 1.29312 1.46136 1.09328 0.84955 0.75770 0.79246 0.77708 1.18446 1.20469 1.18424 1.22719 0.83129 0.98483 0.98633 0.89473 0.88937 0.93295 0.74090 0.69791 0.85673 0.85546 0.90207 0.89046 0.87040 0.87567 0.91992 0.93341 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.62 71.98 0.62 -1.67 16 2 C 0.17 3.05 0.82 5.00 0.00 3.05 16 3 N -0.68 -14.22 5.17 -419.43 -2.17 -16.39 16 4 C 0.61 17.54 7.22 86.79 0.63 18.16 16 5 O -0.55 -19.82 13.85 -3.91 -0.05 -19.88 16 6 C 0.12 3.13 7.96 137.13 1.09 4.22 16 7 N -0.51 -9.64 11.09 -193.04 -2.14 -11.78 16 8 C 0.22 2.10 13.14 180.30 2.37 4.46 16 9 N -0.39 -4.59 6.93 -60.38 -0.42 -5.01 16 10 H 0.47 1.26 8.96 -219.79 -1.97 -0.71 16 11 N -0.29 -7.01 12.30 -52.44 -0.65 -7.65 16 12 C -0.11 -1.11 5.99 31.78 0.19 -0.92 16 13 C 0.08 1.50 6.48 86.73 0.56 2.06 16 14 N -0.61 -18.69 3.33 -811.79 -2.70 -21.39 16 15 C 0.54 22.97 7.87 87.66 0.69 23.66 16 16 O -0.57 -30.71 16.12 -3.02 -0.05 -30.76 16 17 C -0.11 -4.87 5.35 71.24 0.38 -4.49 16 18 S -0.16 -9.23 20.57 -56.49 -1.16 -10.40 16 19 C -0.55 -31.74 9.50 67.96 0.65 -31.09 16 20 H 0.09 4.55 7.80 -2.91 -0.02 4.53 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -57.34 13.22 21.65 0.29 -57.06 16 23 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 C 0.09 2.70 5.78 86.86 0.50 3.21 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.05 1.10 6.45 -2.39 -0.02 1.09 16 31 H 0.42 6.88 8.20 -92.71 -0.76 6.12 16 32 H 0.29 -1.04 8.06 -2.91 -0.02 -1.06 16 33 H 0.13 0.71 8.04 -2.39 -0.02 0.69 16 34 H 0.13 0.52 8.05 -2.39 -0.02 0.50 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 4.22 8.14 -2.40 -0.02 4.20 16 38 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 39 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.05 1.88 6.21 -2.38 -0.01 1.87 16 41 H 0.09 2.27 8.03 -2.39 -0.02 2.25 16 Total: -1.00 -100.11 364.63 -0.51 -100.61 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -1.63 Total: 12.02 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 8.15 Total: 21.81 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -7.79 Total: -119.27 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -0.10 Total: -50.64 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.16 Total: -10.40 kcal Total: -100.11 -0.51 -100.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286103806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.799 kcal (2) G-P(sol) polarization free energy of solvation -100.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds