Wall clock time and date at job start Tue Mar 31 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00157 * 2 1 4 4 H 1.48510 * 109.46852 * 270.00150 * 3 2 1 5 5 H 1.48496 * 109.46997 * 29.99431 * 3 2 1 6 6 H 1.48492 * 109.47259 * 150.00036 * 3 2 1 7 7 C 1.38801 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00115 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99635 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99720 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46758 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00323 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99817 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99940 * 180.02562 * 13 11 10 15 15 H 1.09004 * 112.91032 * 23.75105 * 14 13 11 16 16 C 1.53784 * 113.61434 * 155.00095 * 14 13 11 17 17 C 1.53787 * 87.07923 * 89.11404 * 16 14 13 18 18 H 1.09000 * 113.61529 * 270.88430 * 17 16 14 19 19 C 1.53005 * 113.61178 * 140.06478 * 17 16 14 20 20 N 1.46499 * 109.46872 * 174.99760 * 19 17 16 21 21 C 1.34777 * 119.99733 * 179.97438 * 20 19 17 22 22 O 1.21555 * 119.99822 * 0.02562 * 21 20 19 23 23 C 1.47868 * 119.99866 * 180.02562 * 21 20 19 24 24 N 1.34551 * 126.04636 * 180.02562 * 23 21 20 25 25 C 1.30874 * 107.26975 * 180.02562 * 24 23 21 26 26 N 1.34583 * 107.62106 * 359.97438 * 25 24 23 27 27 H 0.97000 * 125.74649 * 179.97438 * 26 25 24 28 28 N 1.28846 * 108.50419 * 359.73778 * 26 25 24 29 29 C 1.53779 * 113.61357 * 252.49697 * 14 13 11 30 30 H 0.97002 * 120.00106 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47040 * 60.00042 * 10 9 7 32 32 H 1.08990 * 109.47247 * 299.99783 * 10 9 7 33 33 H 0.97000 * 119.99785 * 0.02562 * 13 11 10 34 34 H 1.09004 * 113.61451 * 334.56890 * 16 14 13 35 35 H 1.08994 * 113.61477 * 203.66192 * 16 14 13 36 36 H 1.08995 * 109.46809 * 295.00307 * 19 17 16 37 37 H 1.09006 * 109.46737 * 54.99803 * 19 17 16 38 38 H 0.96993 * 120.00253 * 0.02562 * 20 19 17 39 39 H 1.07994 * 126.18867 * 180.02562 * 25 24 23 40 40 H 1.09006 * 113.61307 * 156.33848 * 29 14 13 41 41 H 1.08999 * 113.69146 * 25.44334 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0025 11 6 5.5729 -3.2326 0.0026 12 8 6.3439 -2.2964 0.0024 13 7 6.0456 -4.4948 0.0030 14 6 7.4906 -4.7358 0.0037 15 1 8.0602 -3.8991 0.4082 16 6 7.8878 -6.0968 0.5996 17 6 7.7385 -6.6727 -0.8185 18 1 6.7311 -7.0228 -1.0438 19 6 8.8178 -7.6946 -1.1818 20 7 8.5229 -8.2699 -2.4964 21 6 9.3439 -9.1989 -3.0249 22 8 10.3288 -9.5597 -2.4106 23 6 9.0466 -9.7792 -4.3521 24 7 9.7786 -10.7096 -4.9914 25 6 9.1846 -10.9555 -6.1314 26 7 8.0876 -10.1785 -6.1951 27 1 7.4549 -10.1506 -6.9298 28 7 8.0168 -9.4815 -5.1138 29 6 8.0290 -5.2554 -1.3398 30 1 -0.4850 0.8401 -0.0004 31 1 3.6439 -3.4322 -0.8873 32 1 3.6432 -3.4310 0.8926 33 1 5.4289 -5.2435 0.0029 34 1 7.1611 -6.4913 1.3098 35 1 8.9097 -6.1264 0.9775 36 1 9.7896 -7.2019 -1.2104 37 1 8.8342 -8.4872 -0.4336 38 1 7.7372 -7.9816 -2.9868 39 1 9.5146 -11.6559 -6.8843 40 1 9.0897 -5.0550 -1.4919 41 1 7.4174 -4.9713 -2.1961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001286381810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:18 Heat of formation + Delta-G solvation = 35.952555 kcal Electronic energy + Delta-G solvation = -25072.379002 eV Core-core repulsion = 21116.240764 eV Total energy + Delta-G solvation = -3956.138238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.01171 -40.49441 -39.61025 -38.22230 -35.11434 -33.94708 -33.17946 -32.45752 -32.05697 -29.62403 -28.08758 -26.01790 -25.64239 -24.95249 -23.50687 -22.63975 -21.16360 -20.78086 -19.66816 -19.23244 -17.94189 -17.78512 -16.92305 -16.72723 -16.32747 -16.09667 -15.56744 -15.40475 -15.11808 -14.99991 -14.68417 -14.46634 -14.06205 -13.78986 -13.38912 -13.08166 -12.81461 -12.78643 -12.77153 -12.42532 -11.92426 -11.37121 -11.27726 -11.26827 -11.09895 -11.02623 -10.92646 -10.67882 -10.60760 -10.43890 -10.31180 -9.87653 -9.57136 -9.48808 -9.04018 -8.98540 -8.52468 -6.94112 -6.30915 -4.02825 0.81223 1.59887 2.03368 2.48652 2.72405 2.90737 2.93434 3.26666 3.32103 3.49127 3.61802 3.72092 3.91431 4.17076 4.20583 4.31349 4.39255 4.41950 4.60635 4.71926 4.86851 5.08219 5.21076 5.22644 5.29699 5.40760 5.43090 5.46367 5.66009 5.70022 5.72290 5.74030 5.78716 5.93006 5.97788 6.01388 6.12029 6.58494 6.94015 7.42736 7.57031 7.74176 7.92076 8.39429 8.45377 9.15262 10.78258 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.001765 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.987337 B =15863.560620 C =16895.580383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.720 5.720 14 C 0.124 3.876 15 H 0.105 0.895 16 C -0.135 4.135 17 C -0.127 4.127 18 H 0.098 0.902 19 C 0.131 3.869 20 N -0.711 5.711 21 C 0.613 3.387 22 O -0.510 6.510 23 C 0.150 3.850 24 N -0.462 5.462 25 C 0.198 3.802 26 N -0.397 5.397 27 H 0.453 0.547 28 N -0.275 5.275 29 C -0.148 4.148 30 H 0.271 0.729 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.399 0.601 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.409 0.591 39 H 0.232 0.768 40 H 0.092 0.908 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.526 -23.681 -10.743 30.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.373 5.373 14 C 0.017 3.983 15 H 0.123 0.877 16 C -0.173 4.173 17 C -0.145 4.145 18 H 0.116 0.884 19 C 0.008 3.992 20 N -0.364 5.364 21 C 0.394 3.606 22 O -0.381 6.381 23 C -0.131 4.131 24 N -0.187 5.187 25 C -0.100 4.100 26 N -0.120 5.120 27 H 0.300 0.700 28 N -0.116 5.116 29 C -0.187 4.187 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.234 0.766 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.244 0.756 39 H 0.248 0.752 40 H 0.110 0.890 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.314 -21.943 -9.796 30.214 hybrid contribution -1.961 -0.849 -1.209 2.456 sum 16.353 -22.792 -11.005 30.133 Atomic orbital electron populations 1.69938 1.05915 1.27780 1.48026 1.24716 0.94457 0.98979 0.93168 0.86733 0.81904 0.83269 0.79934 1.19215 1.19926 1.15910 1.22316 0.88271 0.97533 1.58837 0.89387 1.84807 1.09279 0.99977 1.97428 1.23281 0.93933 1.04469 1.05824 1.20305 0.90568 0.82290 0.74906 1.90702 1.58736 1.42174 1.47498 1.45665 1.06413 1.08031 1.77180 1.21713 0.82287 0.97880 0.96381 0.87738 1.23303 1.03181 0.95286 0.95553 1.22900 0.99243 0.94537 0.97867 0.88361 1.21500 0.98642 0.96005 0.83022 1.45745 1.28447 1.41169 1.20990 1.16280 0.83094 0.79379 0.81839 1.90852 1.26960 1.60242 1.60059 1.23870 0.91485 0.99274 0.98448 1.71327 1.28266 1.14483 1.04592 1.26794 0.86835 0.98384 0.97983 1.45150 1.22201 1.28926 1.15711 0.69969 1.74262 1.23086 1.17923 0.96360 1.23555 1.02190 0.94454 0.98516 0.91933 0.88506 0.88409 0.76639 0.90295 0.88320 0.90606 0.90755 0.75560 0.75158 0.88953 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.33 13.97 55.49 0.78 -25.55 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.61 27.74 -169.99 -4.72 16.90 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 10 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 11 C 0.53 9.01 7.85 -10.98 -0.09 8.92 16 12 O -0.52 -10.81 15.46 5.56 0.09 -10.72 16 13 N -0.72 -8.30 5.26 -53.01 -0.28 -8.58 16 14 C 0.12 1.22 4.32 -67.12 -0.29 0.93 16 15 H 0.10 1.26 7.47 -51.93 -0.39 0.87 16 16 C -0.13 -0.90 7.39 -25.91 -0.19 -1.09 16 17 C -0.13 -0.80 3.63 -89.80 -0.33 -1.12 16 18 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 19 C 0.13 0.94 5.51 -4.04 -0.02 0.92 16 20 N -0.71 -5.69 5.55 -61.24 -0.34 -6.03 16 21 C 0.61 6.77 7.83 -12.32 -0.10 6.67 16 22 O -0.51 -7.38 17.09 5.32 0.09 -7.29 16 23 C 0.15 1.50 7.96 -156.36 -1.24 0.26 16 24 N -0.46 -4.47 11.41 -12.37 -0.14 -4.61 16 25 C 0.20 0.83 13.14 -90.48 -1.19 -0.36 16 26 N -0.40 -1.42 6.93 29.56 0.20 -1.21 16 27 H 0.45 -0.32 8.96 -190.21 -1.71 -2.03 16 28 N -0.27 -2.04 11.98 32.07 0.38 -1.66 16 29 C -0.15 -1.22 7.43 -25.92 -0.19 -1.42 16 30 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 33 H 0.40 3.47 8.70 -40.82 -0.36 3.12 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.08 0.59 7.85 -51.93 -0.41 0.18 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.41 2.69 8.17 -40.82 -0.33 2.36 16 39 H 0.23 -0.26 8.06 -52.49 -0.42 -0.69 16 40 H 0.09 0.72 7.90 -51.93 -0.41 0.31 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -40.15 372.06 -10.08 -50.23 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.56 Total: -1.29 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -3.20 Total: -0.26 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.60 Total: -47.64 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.18 Total: -18.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.72 Total: 16.90 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.15 -10.08 -50.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286381810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.179 kcal (2) G-P(sol) polarization free energy of solvation -40.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds