Wall clock time and date at job start Tue Mar 31 2020 22:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00157 * 2 1 4 4 H 1.48510 * 109.46852 * 270.00150 * 3 2 1 5 5 H 1.48496 * 109.46997 * 29.99431 * 3 2 1 6 6 H 1.48492 * 109.47259 * 150.00036 * 3 2 1 7 7 C 1.38801 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00115 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99635 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99720 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46758 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00323 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99817 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99940 * 180.02562 * 13 11 10 15 15 H 1.09004 * 112.91032 * 23.75105 * 14 13 11 16 16 C 1.53784 * 113.61434 * 155.00095 * 14 13 11 17 17 C 1.53787 * 87.07923 * 89.11404 * 16 14 13 18 18 H 1.09000 * 113.61529 * 270.88430 * 17 16 14 19 19 C 1.53005 * 113.61178 * 140.06478 * 17 16 14 20 20 N 1.46499 * 109.46872 * 174.99760 * 19 17 16 21 21 C 1.34777 * 119.99733 * 179.97438 * 20 19 17 22 22 O 1.21555 * 119.99822 * 0.02562 * 21 20 19 23 23 C 1.47868 * 119.99866 * 180.02562 * 21 20 19 24 24 N 1.34551 * 126.04636 * 180.02562 * 23 21 20 25 25 C 1.30874 * 107.26975 * 180.02562 * 24 23 21 26 26 N 1.34583 * 107.62106 * 359.97438 * 25 24 23 27 27 H 0.97000 * 125.74649 * 179.97438 * 26 25 24 28 28 N 1.28846 * 108.50419 * 359.73778 * 26 25 24 29 29 C 1.53779 * 113.61357 * 252.49697 * 14 13 11 30 30 H 0.97002 * 120.00106 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47040 * 60.00042 * 10 9 7 32 32 H 1.08990 * 109.47247 * 299.99783 * 10 9 7 33 33 H 0.97000 * 119.99785 * 0.02562 * 13 11 10 34 34 H 1.09004 * 113.61451 * 334.56890 * 16 14 13 35 35 H 1.08994 * 113.61477 * 203.66192 * 16 14 13 36 36 H 1.08995 * 109.46809 * 295.00307 * 19 17 16 37 37 H 1.09006 * 109.46737 * 54.99803 * 19 17 16 38 38 H 0.96993 * 120.00253 * 0.02562 * 20 19 17 39 39 H 1.07994 * 126.18867 * 180.02562 * 25 24 23 40 40 H 1.09006 * 113.61307 * 156.33848 * 29 14 13 41 41 H 1.08999 * 113.69146 * 25.44334 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0025 11 6 5.5729 -3.2326 0.0026 12 8 6.3439 -2.2964 0.0024 13 7 6.0456 -4.4948 0.0030 14 6 7.4906 -4.7358 0.0037 15 1 8.0602 -3.8991 0.4082 16 6 7.8878 -6.0968 0.5996 17 6 7.7385 -6.6727 -0.8185 18 1 6.7311 -7.0228 -1.0438 19 6 8.8178 -7.6946 -1.1818 20 7 8.5229 -8.2699 -2.4964 21 6 9.3439 -9.1989 -3.0249 22 8 10.3288 -9.5597 -2.4106 23 6 9.0466 -9.7792 -4.3521 24 7 9.7786 -10.7096 -4.9914 25 6 9.1846 -10.9555 -6.1314 26 7 8.0876 -10.1785 -6.1951 27 1 7.4549 -10.1506 -6.9298 28 7 8.0168 -9.4815 -5.1138 29 6 8.0290 -5.2554 -1.3398 30 1 -0.4850 0.8401 -0.0004 31 1 3.6439 -3.4322 -0.8873 32 1 3.6432 -3.4310 0.8926 33 1 5.4289 -5.2435 0.0029 34 1 7.1611 -6.4913 1.3098 35 1 8.9097 -6.1264 0.9775 36 1 9.7896 -7.2019 -1.2104 37 1 8.8342 -8.4872 -0.4336 38 1 7.7372 -7.9816 -2.9868 39 1 9.5146 -11.6559 -6.8843 40 1 9.0897 -5.0550 -1.4919 41 1 7.4174 -4.9713 -2.1961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001286381810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:17 Heat of formation + Delta-G solvation = 4.071639 kcal Electronic energy + Delta-G solvation = -25073.761462 eV Core-core repulsion = 21116.240764 eV Total energy + Delta-G solvation = -3957.520699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.47737 -41.36762 -40.52330 -39.29507 -35.92612 -34.67082 -34.45649 -34.25664 -32.59533 -30.91091 -28.92083 -27.84071 -26.65083 -25.60934 -23.95872 -23.32627 -22.21267 -21.61257 -20.35337 -19.87137 -19.77285 -18.46382 -17.93144 -17.45280 -17.20985 -17.15110 -16.97576 -16.49564 -16.25355 -15.90224 -15.80815 -15.32382 -15.23308 -14.92832 -14.74538 -14.59955 -13.92988 -13.68675 -13.35725 -13.32271 -13.25039 -13.02541 -12.87172 -12.65953 -11.98509 -11.85327 -11.81364 -11.79869 -11.54733 -11.34309 -11.20170 -11.16658 -10.98723 -10.81071 -10.52390 -10.18784 -10.03217 -8.98774 -8.51164 -6.21661 0.23722 0.99892 1.14012 1.31551 1.47402 1.56490 1.56562 1.63006 2.02586 2.22192 2.22752 2.26689 2.72737 2.87177 3.18070 3.48456 3.50823 3.66549 3.78173 3.85940 3.93902 4.05950 4.25983 4.30802 4.48462 4.58636 4.68184 4.82897 4.85205 4.89092 4.92603 5.05417 5.13417 5.21969 5.24057 5.34081 5.65960 5.71202 5.91693 6.12005 6.30550 6.50279 6.91812 6.94261 7.07366 7.23036 8.61078 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.001765 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.987337 B =15863.560620 C =16895.580383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.111 4.111 11 C 0.537 3.463 12 O -0.563 6.563 13 N -0.693 5.693 14 C 0.108 3.892 15 H 0.082 0.918 16 C -0.119 4.119 17 C -0.108 4.108 18 H 0.113 0.887 19 C 0.132 3.868 20 N -0.697 5.697 21 C 0.608 3.392 22 O -0.557 6.557 23 C 0.120 3.880 24 N -0.516 5.516 25 C 0.219 3.781 26 N -0.379 5.379 27 H 0.473 0.527 28 N -0.277 5.277 29 C -0.145 4.145 30 H 0.277 0.723 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.417 0.583 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.417 0.583 39 H 0.282 0.718 40 H 0.096 0.904 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.003 -25.218 -11.813 32.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.262 4.262 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.346 5.346 14 C 0.002 3.998 15 H 0.100 0.900 16 C -0.157 4.157 17 C -0.127 4.127 18 H 0.131 0.869 19 C 0.009 3.991 20 N -0.349 5.349 21 C 0.391 3.609 22 O -0.432 6.432 23 C -0.160 4.160 24 N -0.242 5.242 25 C -0.078 4.078 26 N -0.105 5.105 27 H 0.324 0.676 28 N -0.120 5.120 29 C -0.184 4.184 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.255 0.745 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.254 0.746 39 H 0.298 0.702 40 H 0.115 0.885 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.737 -23.523 -10.896 31.986 hybrid contribution -2.110 -0.560 -0.981 2.393 sum 16.627 -24.083 -11.877 31.584 Atomic orbital electron populations 1.70014 1.07268 1.28986 1.49181 1.25557 0.95269 1.02225 0.92950 0.85874 0.80680 0.79681 0.80185 1.18727 1.18412 1.16112 1.22466 0.90262 0.96690 1.58160 0.91849 1.84749 1.06408 1.06390 1.97589 1.23273 0.95895 0.99491 1.07549 1.19960 0.89309 0.83464 0.74948 1.90693 1.59313 1.43917 1.50204 1.45399 1.07752 1.06657 1.74825 1.21925 0.80653 0.98882 0.98334 0.89991 1.23265 1.04225 0.92371 0.95864 1.22796 0.99624 0.93019 0.97243 0.86866 1.21527 0.98726 0.96128 0.82715 1.45699 1.28025 1.40089 1.21083 1.16566 0.82704 0.79394 0.82260 1.90809 1.28903 1.61998 1.61471 1.23691 0.92849 1.00714 0.98751 1.71265 1.30240 1.15737 1.06918 1.27664 0.85571 0.97508 0.97063 1.45190 1.22418 1.27742 1.15155 0.67575 1.74166 1.22299 1.18373 0.97157 1.23537 1.02228 0.95521 0.97126 0.91398 0.86736 0.86727 0.74533 0.88997 0.87049 0.91117 0.90545 0.74607 0.70238 0.88534 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.32 13.97 21.65 0.30 -55.02 16 2 C 0.05 2.64 5.50 84.86 0.47 3.11 16 3 Si 0.91 44.70 27.74 68.60 1.90 46.60 16 4 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 7 C -0.53 -30.34 10.04 67.95 0.68 -29.66 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 9 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 10 C -0.11 -3.99 6.16 71.24 0.44 -3.56 16 11 C 0.54 17.46 7.85 87.66 0.69 18.15 16 12 O -0.56 -23.41 15.46 -3.03 -0.05 -23.46 16 13 N -0.69 -14.46 5.26 -440.03 -2.32 -16.78 16 14 C 0.11 1.94 4.32 45.52 0.20 2.14 16 15 H 0.08 1.93 7.47 -2.39 -0.02 1.91 16 16 C -0.12 -1.26 7.39 31.12 0.23 -1.03 16 17 C -0.11 -1.09 3.63 -10.26 -0.04 -1.13 16 18 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 19 C 0.13 1.70 5.51 86.38 0.48 2.17 16 20 N -0.70 -10.52 5.55 -465.94 -2.59 -13.11 16 21 C 0.61 13.53 7.83 86.79 0.68 14.21 16 22 O -0.56 -16.67 17.09 -3.89 -0.07 -16.73 16 23 C 0.12 2.35 7.96 137.13 1.09 3.45 16 24 N -0.52 -9.61 11.41 -193.04 -2.20 -11.81 16 25 C 0.22 1.28 13.14 180.30 2.37 3.65 16 26 N -0.38 -1.77 6.93 -60.38 -0.42 -2.19 16 27 H 0.47 -2.11 8.96 -219.80 -1.97 -4.08 16 28 N -0.28 -3.71 11.98 -52.44 -0.63 -4.34 16 29 C -0.15 -2.15 7.43 31.12 0.23 -1.92 16 30 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 32 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 33 H 0.42 5.88 8.70 -92.71 -0.81 5.07 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.11 0.99 8.10 -2.39 -0.02 0.97 16 36 H 0.07 1.03 7.85 -2.39 -0.02 1.01 16 37 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.42 4.87 8.17 -92.71 -0.76 4.12 16 39 H 0.28 -1.79 8.06 -2.91 -0.02 -1.82 16 40 H 0.10 1.38 7.90 -2.38 -0.02 1.36 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -90.85 372.06 -2.05 -92.90 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -2.46 Total: 4.23 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 7.51 Total: 9.59 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -7.85 Total: -103.25 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.11 Total: -40.19 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -90.85 -2.05 -92.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286381810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.976 kcal (2) G-P(sol) polarization free energy of solvation -90.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds