Wall clock time and date at job start Tue Mar 31 2020 22:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99810 * 2 1 4 4 H 1.48500 * 109.47489 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47573 * 299.99903 * 3 2 1 6 6 H 1.48504 * 109.47424 * 59.99873 * 3 2 1 7 7 C 1.38804 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99973 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99810 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47212 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00190 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00270 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00207 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46983 * 179.97438 * 14 13 11 16 16 H 1.09002 * 112.85017 * 314.66585 * 15 14 13 17 17 C 1.53786 * 113.61503 * 85.86203 * 15 14 13 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 15 14 19 19 H 1.09003 * 113.61268 * 89.11946 * 18 17 15 20 20 N 1.46497 * 113.61947 * 220.02008 * 18 17 15 21 21 C 1.34773 * 120.00221 * 252.49496 * 20 18 17 22 22 O 1.21614 * 120.00356 * 0.02562 * 21 20 18 23 23 C 1.47233 * 120.00114 * 179.97438 * 21 20 18 24 24 C 1.37010 * 127.19200 * 180.02562 * 23 21 20 25 25 N 1.33316 * 106.37524 * 180.02562 * 24 23 21 26 26 N 1.28514 * 109.43660 * 359.97438 * 25 24 23 27 27 N 1.28713 * 110.64331 * 359.71586 * 26 25 24 28 28 H 0.96997 * 126.03886 * 180.29677 * 27 26 25 29 29 C 1.53781 * 113.61337 * 183.46996 * 15 14 13 30 30 H 0.97002 * 120.00164 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46981 * 60.00192 * 10 9 7 32 32 H 1.08994 * 109.47119 * 300.00682 * 10 9 7 33 33 H 0.96999 * 120.00146 * 359.97438 * 13 11 10 34 34 H 1.09000 * 109.47232 * 59.99775 * 14 13 11 35 35 H 1.08997 * 109.47041 * 299.99591 * 14 13 11 36 36 H 1.08992 * 113.61675 * 254.61398 * 17 15 14 37 37 H 1.09000 * 113.60973 * 25.51686 * 17 15 14 38 38 H 0.97001 * 119.99862 * 72.50056 * 20 18 17 39 39 H 1.08001 * 126.80784 * 359.97438 * 24 23 21 40 40 H 1.08999 * 113.61567 * 334.48261 * 29 15 14 41 41 H 1.09000 * 113.61379 * 105.30384 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9877 -5.3026 -0.0012 12 8 0.7914 -5.5023 -0.0021 13 7 2.8444 -6.3430 -0.0008 14 6 2.3307 -7.7150 -0.0019 15 6 3.5029 -8.6984 -0.0018 16 1 4.2814 -8.4291 -0.7156 17 6 4.0393 -9.0173 1.4037 18 6 4.1831 -10.4759 0.9292 19 1 5.1477 -10.6925 0.4700 20 7 3.7988 -11.4629 1.9412 21 6 4.7448 -12.1962 2.5608 22 8 5.9175 -12.0381 2.2801 23 6 4.3586 -13.1878 3.5783 24 6 5.1913 -14.0065 4.2949 25 7 4.4087 -14.7329 5.0930 26 7 3.1809 -14.4048 4.9020 27 7 3.0916 -13.4803 4.0109 28 1 2.2721 -13.0659 3.6987 29 6 3.0709 -10.1717 -0.0883 30 1 -0.4850 0.8401 -0.0004 31 1 3.1246 -3.7312 0.8895 32 1 3.1247 -3.7312 -0.8904 33 1 3.8012 -6.1834 -0.0004 34 1 1.7230 -7.8747 -0.8926 35 1 1.7213 -7.8755 0.8873 36 1 4.9900 -8.5340 1.6283 37 1 3.2996 -8.8861 2.1935 38 1 2.8635 -11.5888 2.1653 39 1 6.2681 -14.0544 4.2261 40 1 2.0669 -10.3556 0.2943 41 1 3.2391 -10.6193 -1.0678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001290018678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:45 Heat of formation + Delta-G solvation = 7.636755 kcal Electronic energy + Delta-G solvation = -24882.994532 eV Core-core repulsion = 20925.628429 eV Total energy + Delta-G solvation = -3957.366103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.46889 -41.32006 -40.52686 -39.36175 -35.89642 -35.02878 -34.58570 -34.08675 -32.46536 -31.28641 -28.39263 -27.60236 -26.67700 -25.80975 -24.27004 -23.17717 -22.00267 -21.83376 -21.05970 -20.06822 -19.70292 -17.96366 -17.79216 -17.62444 -17.48495 -16.91840 -16.86783 -16.68674 -16.20232 -15.84918 -15.76262 -15.55466 -15.30369 -14.72600 -14.66243 -14.40724 -13.63500 -13.41854 -13.36189 -13.23581 -13.15894 -13.00685 -12.90847 -12.61713 -12.45455 -12.26886 -11.89221 -11.80086 -11.65529 -11.44861 -11.32187 -11.16057 -10.90100 -10.72617 -10.27076 -10.19106 -10.04841 -8.66405 -8.35208 -6.12861 -0.25467 1.13856 1.28004 1.38239 1.41193 1.47913 1.58761 1.63762 1.85045 1.89633 2.26388 2.34458 2.99222 3.23324 3.31936 3.44638 3.56359 3.60094 3.79654 3.81745 3.88969 4.04436 4.04653 4.29953 4.31216 4.47137 4.52720 4.71656 4.78319 4.83905 4.87082 4.89258 5.00904 5.10857 5.18738 5.42151 5.46740 5.54745 5.63427 6.19833 6.23847 6.53905 6.86515 7.06596 7.11540 7.27637 8.74191 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.001517 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.229059 B =18458.273865 C =18540.613544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.131 4.131 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.711 5.711 14 C 0.132 3.868 15 C -0.111 4.111 16 H 0.115 0.885 17 C -0.147 4.147 18 C 0.124 3.876 19 H 0.115 0.885 20 N -0.698 5.698 21 C 0.603 3.397 22 O -0.547 6.547 23 C -0.064 4.064 24 C 0.026 3.974 25 N -0.299 5.299 26 N -0.060 5.060 27 N -0.349 5.349 28 H 0.468 0.532 29 C -0.123 4.123 30 H 0.271 0.729 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.413 0.587 39 H 0.217 0.783 40 H 0.104 0.896 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.073 -27.674 2.591 29.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.365 5.365 14 C 0.008 3.992 15 C -0.130 4.130 16 H 0.133 0.867 17 C -0.186 4.186 18 C 0.019 3.981 19 H 0.133 0.867 20 N -0.349 5.349 21 C 0.387 3.613 22 O -0.423 6.423 23 C -0.199 4.199 24 C -0.134 4.134 25 N -0.163 5.163 26 N -0.042 5.042 27 N -0.079 5.079 28 H 0.319 0.681 29 C -0.162 4.162 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.253 0.747 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.250 0.750 39 H 0.234 0.766 40 H 0.122 0.878 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.121 -28.782 3.384 30.382 hybrid contribution 1.446 2.286 -0.695 2.793 sum 10.567 -26.496 2.689 28.652 Atomic orbital electron populations 1.70184 1.07952 1.28537 1.48082 1.26111 0.95950 1.03280 0.93751 0.84916 0.78624 0.76406 0.78066 1.18054 1.19932 1.19990 1.23248 0.95362 0.92072 1.58749 0.89927 1.85549 1.10683 0.99255 1.97046 1.23386 1.03482 0.94648 1.06728 1.20021 0.86257 0.86709 0.75191 1.90688 1.17461 1.86140 1.50359 1.45762 1.10236 1.05269 1.75265 1.21409 0.96516 0.79443 1.01796 1.22555 0.97465 0.94323 0.98695 0.86662 1.23638 1.02361 0.95606 0.96959 1.22668 1.00319 0.86353 0.88723 0.86729 1.45781 1.09824 1.38842 1.40452 1.16764 0.85701 0.79265 0.79616 1.90883 1.18717 1.68145 1.64560 1.22274 0.85861 1.06091 1.05702 1.24301 1.02847 0.93138 0.93127 1.75028 0.96138 1.23202 1.21982 1.78208 1.15773 1.03742 1.06509 1.45579 1.09658 1.26218 1.26471 0.68071 1.23317 0.99064 0.93612 1.00167 0.91999 0.87344 0.87270 0.74720 0.92111 0.92068 0.90707 0.89344 0.74997 0.76602 0.87810 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -30.77 9.50 67.96 0.65 -30.12 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 9 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 10 C -0.13 -4.96 6.16 71.23 0.44 -4.52 16 11 C 0.53 18.24 7.85 87.65 0.69 18.93 16 12 O -0.57 -24.95 15.86 -3.02 -0.05 -25.00 16 13 N -0.71 -15.13 5.56 -463.06 -2.57 -17.70 16 14 C 0.13 2.15 5.50 86.38 0.47 2.62 16 15 C -0.11 -0.88 3.75 -10.26 -0.04 -0.92 16 16 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 17 C -0.15 -1.20 7.45 31.21 0.23 -0.97 16 18 C 0.12 0.82 4.25 45.61 0.19 1.01 16 19 H 0.11 1.06 7.47 -2.39 -0.02 1.05 16 20 N -0.70 -3.64 5.35 -443.07 -2.37 -6.01 16 21 C 0.60 6.78 7.81 86.61 0.68 7.45 16 22 O -0.55 -10.38 16.52 -4.08 -0.07 -10.44 16 23 C -0.06 -0.66 7.17 40.41 0.29 -0.37 16 24 C 0.03 0.35 11.87 84.18 1.00 1.35 16 25 N -0.30 -5.21 12.35 -57.50 -0.71 -5.92 16 26 N -0.06 -0.87 13.35 37.02 0.49 -0.38 16 27 N -0.35 -2.40 6.98 -48.52 -0.34 -2.74 16 28 H 0.47 -0.90 8.32 -219.90 -1.83 -2.73 16 29 C -0.12 -0.53 7.39 31.12 0.23 -0.30 16 30 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 32 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 33 H 0.42 6.12 8.47 -92.71 -0.79 5.34 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.11 7.88 -2.39 -0.02 1.09 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.78 7.92 -2.39 -0.02 0.76 16 38 H 0.41 -0.47 7.99 -92.71 -0.74 -1.21 16 39 H 0.22 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.10 0.24 8.08 -2.39 -0.02 0.22 16 41 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -86.51 373.94 -1.41 -87.92 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -2.24 Total: 4.33 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.30 Total: -4.60 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -5.21 Total: -87.81 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.12 Total: -35.44 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -86.51 -1.41 -87.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290018678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.562 kcal (2) G-P(sol) polarization free energy of solvation -86.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds