Wall clock time and date at job start Tue Mar 31 2020 22:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 119.99908 * 2 1 4 4 H 1.48499 * 109.47456 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47246 * 300.00392 * 3 2 1 6 6 H 1.48504 * 109.47052 * 59.99754 * 3 2 1 7 7 C 1.38800 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99857 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99783 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46781 * 179.97438 * 10 9 7 12 12 O 1.21273 * 119.99943 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99793 * 180.02562 * 11 10 9 14 14 C 1.47427 * 125.64668 * 359.95604 * 13 11 10 15 15 C 1.54916 * 104.83095 * 204.16692 * 14 13 11 16 16 C 1.55161 * 101.57977 * 322.99194 * 15 14 13 17 17 H 1.09002 * 110.87110 * 277.06926 * 16 15 14 18 18 N 1.46497 * 110.71745 * 153.86545 * 16 15 14 19 19 C 1.34777 * 119.99525 * 160.02005 * 18 16 15 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 C 1.50703 * 109.47148 * 180.28037 * 21 19 18 23 23 N 1.33237 * 125.53028 * 90.00016 * 22 21 19 24 24 C 1.30829 * 109.82933 * 180.02562 * 23 22 21 25 25 N 1.34424 * 108.08042 * 359.97438 * 24 23 22 26 26 H 0.97003 * 126.82602 * 179.97438 * 25 24 23 27 27 N 1.30717 * 125.52159 * 269.69325 * 22 21 19 28 28 C 1.47018 * 125.64941 * 180.02562 * 13 11 10 29 29 H 0.96996 * 120.00342 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47132 * 60.00020 * 10 9 7 31 31 H 1.08997 * 109.46719 * 299.99961 * 10 9 7 32 32 H 1.08999 * 110.36923 * 323.00506 * 14 13 11 33 33 H 1.09003 * 110.36761 * 85.22054 * 14 13 11 34 34 H 1.09004 * 111.00055 * 204.91929 * 15 14 13 35 35 H 1.08993 * 111.00337 * 81.06411 * 15 14 13 36 36 H 0.97000 * 120.00580 * 340.02751 * 18 16 15 37 37 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 38 38 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 39 39 H 1.08008 * 125.96088 * 179.97438 * 24 23 22 40 40 H 1.09001 * 109.88072 * 59.48533 * 28 13 11 41 41 H 1.08997 * 109.87977 * 298.32158 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5022 0.0011 13 7 2.8443 -6.3431 0.0018 14 6 4.3153 -6.2447 0.0010 15 6 4.8018 -7.5821 -0.6110 16 6 3.7731 -8.5852 -0.0252 17 1 4.0582 -8.8903 0.9817 18 7 3.6329 -9.7530 -0.8985 19 6 3.1232 -10.9015 -0.4111 20 8 2.7802 -10.9681 0.7503 21 6 2.9731 -12.1010 -1.3110 22 6 2.3779 -13.2439 -0.5296 23 7 1.0767 -13.5005 -0.4028 24 6 0.9043 -14.5634 0.3403 25 7 2.1153 -15.0153 0.7094 26 1 2.3030 -15.7889 1.2637 27 7 3.0549 -14.1476 0.1291 28 6 2.4668 -7.7640 0.0019 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7313 0.8905 31 1 3.1246 -3.7313 -0.8894 32 1 4.6391 -5.4057 -0.6148 33 1 4.6886 -6.1334 1.0191 34 1 5.8122 -7.8194 -0.2779 35 1 4.7467 -7.5567 -1.6992 36 1 3.9069 -9.6997 -1.8275 37 1 2.3169 -11.8501 -2.1445 38 1 3.9511 -12.3928 -1.6936 39 1 -0.0454 -15.0013 0.6103 40 1 1.8691 -7.9888 -0.8814 41 1 1.9013 -7.9971 0.9040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295003869.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:15 Heat of formation + Delta-G solvation = 23.615708 kcal Electronic energy + Delta-G solvation = -25529.522800 eV Core-core repulsion = 21572.849596 eV Total energy + Delta-G solvation = -3956.673204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.49745 -40.41125 -39.29275 -37.26065 -34.44404 -33.72738 -32.41932 -32.12099 -31.14005 -29.73296 -29.44837 -27.57609 -25.47785 -23.70442 -23.21613 -22.09130 -21.11404 -20.36729 -19.31494 -18.75092 -17.83289 -17.48863 -17.03057 -16.49457 -15.91578 -15.75989 -15.56871 -15.10063 -14.88384 -14.79456 -14.23057 -13.97632 -13.84879 -13.75867 -13.52182 -12.94893 -12.65971 -12.54479 -12.48272 -12.44738 -12.11858 -11.85020 -11.77050 -11.13834 -11.06069 -11.00538 -10.75353 -10.62004 -10.43893 -10.30234 -9.98067 -9.80297 -9.56857 -9.31899 -9.06483 -8.50909 -8.21263 -6.49066 -6.20657 -3.91296 1.20215 2.19757 2.29242 2.35744 2.77246 3.05907 3.10123 3.22237 3.27864 3.32287 3.62637 3.67058 4.11143 4.17616 4.21055 4.34251 4.45273 4.57132 4.72120 4.88998 4.96648 5.04727 5.09623 5.12007 5.14486 5.43301 5.45985 5.60418 5.66926 5.71538 5.78062 5.85148 5.93448 5.95761 6.12627 6.14405 6.41551 6.61159 7.09101 7.60566 7.65996 7.67014 7.86304 8.36320 8.57517 9.24557 10.86838 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.001778 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.486868 B =15740.073763 C =16356.941144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.513 6.513 13 N -0.626 5.626 14 C 0.102 3.898 15 C -0.138 4.138 16 C 0.137 3.863 17 H 0.105 0.895 18 N -0.720 5.720 19 C 0.523 3.477 20 O -0.523 6.523 21 C -0.049 4.049 22 C 0.247 3.753 23 N -0.533 5.533 24 C 0.265 3.735 25 N -0.483 5.483 26 H 0.442 0.558 27 N -0.305 5.305 28 C 0.100 3.900 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.404 0.596 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.224 0.776 40 H 0.070 0.930 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.629 -29.859 -3.202 32.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.386 6.386 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.176 4.176 16 C 0.031 3.969 17 H 0.123 0.877 18 N -0.373 5.373 19 C 0.308 3.692 20 O -0.398 6.398 21 C -0.091 4.091 22 C -0.037 4.037 23 N -0.261 5.261 24 C -0.034 4.034 25 N -0.201 5.201 26 H 0.288 0.712 27 N -0.135 5.135 28 C -0.025 4.025 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.240 0.760 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.240 0.760 40 H 0.089 0.911 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.865 -29.812 -2.488 31.500 hybrid contribution 1.940 0.632 0.076 2.042 sum 11.805 -29.181 -2.412 31.570 Atomic orbital electron populations 1.70031 1.05953 1.27348 1.46911 1.24999 0.95028 0.99036 0.94558 0.86112 0.79562 0.81880 0.77897 1.19619 1.20570 1.20573 1.22902 0.94930 0.91593 1.58853 0.90859 1.85446 1.04941 0.96342 1.96700 1.23506 1.06483 0.94873 1.04801 1.20054 0.85688 0.85392 0.75247 1.90720 1.14974 1.85074 1.47857 1.48453 1.06553 1.05418 1.76046 1.22270 0.80611 0.97868 1.01407 1.23082 0.99007 0.93947 1.01569 1.21971 0.94716 0.84562 0.95643 0.87673 1.45842 1.65695 1.11155 1.14605 1.20236 0.76927 0.83676 0.88407 1.90773 1.47577 1.83618 1.17809 1.19879 1.03524 0.88418 0.97282 1.23255 0.87882 0.95622 0.96905 1.70377 1.18105 1.15981 1.21613 1.26108 0.92006 0.91963 0.93322 1.48078 1.04944 1.25725 1.41378 0.71239 1.77953 1.14401 1.05346 1.15760 1.22230 0.96597 0.80627 1.03039 0.92229 0.89236 0.89259 0.89698 0.90904 0.88991 0.89696 0.76043 0.85659 0.86259 0.75978 0.91125 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.02 5.16 36.01 0.19 -2.83 16 11 C 0.55 10.87 7.87 -10.98 -0.09 10.79 16 12 O -0.51 -12.39 16.19 5.56 0.09 -12.30 16 13 N -0.63 -9.21 3.33 -170.52 -0.57 -9.78 16 14 C 0.10 1.02 6.69 -2.52 -0.02 1.00 16 15 C -0.14 -0.93 6.69 -24.58 -0.16 -1.09 16 16 C 0.14 1.25 3.24 -66.10 -0.21 1.04 16 17 H 0.11 1.08 7.69 -51.93 -0.40 0.68 16 18 N -0.72 -5.26 5.13 -52.03 -0.27 -5.52 16 19 C 0.52 5.16 7.82 -10.98 -0.09 5.07 16 20 O -0.52 -7.71 15.76 5.55 0.09 -7.62 16 21 C -0.05 -0.35 6.33 -29.03 -0.18 -0.53 16 22 C 0.25 2.55 6.63 -156.85 -1.04 1.51 16 23 N -0.53 -5.63 11.19 -11.97 -0.13 -5.77 16 24 C 0.27 1.75 13.13 -90.66 -1.19 0.56 16 25 N -0.48 -3.14 7.45 29.53 0.22 -2.92 16 26 H 0.44 1.13 8.96 -182.33 -1.63 -0.50 16 27 N -0.31 -3.11 12.80 32.42 0.41 -2.69 16 28 C 0.10 1.32 6.62 -3.07 -0.02 1.30 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 31 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 32 H 0.08 0.80 7.48 -51.93 -0.39 0.41 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.48 8.00 -51.93 -0.42 0.07 16 36 H 0.40 1.58 8.52 -40.82 -0.35 1.24 16 37 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.22 0.33 8.06 -52.48 -0.42 -0.10 16 40 H 0.07 0.98 8.03 -51.93 -0.42 0.57 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -42.91 371.22 -10.19 -53.10 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.51 Total: -2.84 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -2.62 Total: 3.81 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.40 Total: -52.26 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.18 Total: -19.93 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -42.91 -10.19 -53.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295003869.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.716 kcal (2) G-P(sol) polarization free energy of solvation -42.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds