Wall clock time and date at job start Tue Mar 31 2020 22:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 119.99908 * 2 1 4 4 H 1.48499 * 109.47456 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47246 * 300.00392 * 3 2 1 6 6 H 1.48504 * 109.47052 * 59.99754 * 3 2 1 7 7 C 1.38800 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99857 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99783 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46781 * 179.97438 * 10 9 7 12 12 O 1.21273 * 119.99943 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99793 * 180.02562 * 11 10 9 14 14 C 1.47427 * 125.64668 * 359.95604 * 13 11 10 15 15 C 1.54916 * 104.83095 * 204.16692 * 14 13 11 16 16 C 1.55161 * 101.57977 * 322.99194 * 15 14 13 17 17 H 1.09002 * 110.87110 * 277.06926 * 16 15 14 18 18 N 1.46497 * 110.71745 * 153.86545 * 16 15 14 19 19 C 1.34777 * 119.99525 * 160.02005 * 18 16 15 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 C 1.50703 * 109.47148 * 180.28037 * 21 19 18 23 23 N 1.33237 * 125.53028 * 90.00016 * 22 21 19 24 24 C 1.30829 * 109.82933 * 180.02562 * 23 22 21 25 25 N 1.34424 * 108.08042 * 359.97438 * 24 23 22 26 26 H 0.97003 * 126.82602 * 179.97438 * 25 24 23 27 27 N 1.30717 * 125.52159 * 269.69325 * 22 21 19 28 28 C 1.47018 * 125.64941 * 180.02562 * 13 11 10 29 29 H 0.96996 * 120.00342 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47132 * 60.00020 * 10 9 7 31 31 H 1.08997 * 109.46719 * 299.99961 * 10 9 7 32 32 H 1.08999 * 110.36923 * 323.00506 * 14 13 11 33 33 H 1.09003 * 110.36761 * 85.22054 * 14 13 11 34 34 H 1.09004 * 111.00055 * 204.91929 * 15 14 13 35 35 H 1.08993 * 111.00337 * 81.06411 * 15 14 13 36 36 H 0.97000 * 120.00580 * 340.02751 * 18 16 15 37 37 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 38 38 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 39 39 H 1.08008 * 125.96088 * 179.97438 * 24 23 22 40 40 H 1.09001 * 109.88072 * 59.48533 * 28 13 11 41 41 H 1.08997 * 109.87977 * 298.32158 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5022 0.0011 13 7 2.8443 -6.3431 0.0018 14 6 4.3153 -6.2447 0.0010 15 6 4.8018 -7.5821 -0.6110 16 6 3.7731 -8.5852 -0.0252 17 1 4.0582 -8.8903 0.9817 18 7 3.6329 -9.7530 -0.8985 19 6 3.1232 -10.9015 -0.4111 20 8 2.7802 -10.9681 0.7503 21 6 2.9731 -12.1010 -1.3110 22 6 2.3779 -13.2439 -0.5296 23 7 1.0767 -13.5005 -0.4028 24 6 0.9043 -14.5634 0.3403 25 7 2.1153 -15.0153 0.7094 26 1 2.3030 -15.7889 1.2637 27 7 3.0549 -14.1476 0.1291 28 6 2.4668 -7.7640 0.0019 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7313 0.8905 31 1 3.1246 -3.7313 -0.8894 32 1 4.6391 -5.4057 -0.6148 33 1 4.6886 -6.1334 1.0191 34 1 5.8122 -7.8194 -0.2779 35 1 4.7467 -7.5567 -1.6992 36 1 3.9069 -9.6997 -1.8275 37 1 2.3169 -11.8501 -2.1445 38 1 3.9511 -12.3928 -1.6936 39 1 -0.0454 -15.0013 0.6103 40 1 1.8691 -7.9888 -0.8814 41 1 1.9013 -7.9971 0.9040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295003869.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:14 Heat of formation + Delta-G solvation = -10.386723 kcal Electronic energy + Delta-G solvation = -25530.997256 eV Core-core repulsion = 21572.849596 eV Total energy + Delta-G solvation = -3958.147660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.07712 -41.38680 -40.43762 -38.47771 -35.39722 -34.58285 -34.32947 -32.78397 -32.22560 -30.89372 -30.24618 -28.65428 -27.63730 -24.74405 -23.79814 -22.80008 -21.93174 -21.06482 -20.67474 -19.63124 -19.27481 -18.32437 -18.20003 -17.67163 -16.89908 -16.84914 -16.64653 -16.39721 -16.16336 -15.90100 -15.63559 -15.29396 -14.78268 -14.54398 -14.43100 -14.37976 -14.02979 -13.69782 -13.36369 -13.18028 -13.14640 -13.04299 -12.91024 -12.86149 -12.64218 -12.59470 -11.87446 -11.70452 -11.31584 -11.15557 -11.09387 -11.05316 -10.99247 -10.63259 -10.27345 -10.25420 -9.76903 -8.68587 -8.34311 -6.13473 0.63338 1.21315 1.42587 1.43039 1.52809 1.54244 1.58450 1.67827 1.84863 2.01600 2.27283 2.38514 3.00031 3.16965 3.21989 3.41151 3.50572 3.67317 3.84740 3.90565 4.02897 4.15699 4.18849 4.24624 4.33473 4.44057 4.46239 4.58430 4.63656 4.74063 4.76755 4.97467 5.07655 5.22530 5.28095 5.36057 5.42409 5.42768 6.20488 6.24947 6.33164 6.49243 7.06621 7.07475 7.09523 7.19978 8.75354 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.001778 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.486868 B =15740.073763 C =16356.941144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 1.002 2.998 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.157 6.157 10 C -0.117 4.117 11 C 0.544 3.456 12 O -0.571 6.571 13 N -0.615 5.615 14 C 0.087 3.913 15 C -0.116 4.116 16 C 0.147 3.853 17 H 0.096 0.904 18 N -0.702 5.702 19 C 0.522 3.478 20 O -0.579 6.579 21 C -0.045 4.045 22 C 0.228 3.772 23 N -0.579 5.579 24 C 0.272 3.728 25 N -0.475 5.475 26 H 0.457 0.543 27 N -0.337 5.337 28 C 0.097 3.903 29 H 0.271 0.729 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.425 0.575 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.268 0.732 40 H 0.061 0.939 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.058 -30.492 -4.208 34.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.268 4.268 11 C 0.332 3.668 12 O -0.449 6.449 13 N -0.351 5.351 14 C -0.035 4.035 15 C -0.154 4.154 16 C 0.040 3.960 17 H 0.114 0.886 18 N -0.355 5.355 19 C 0.308 3.692 20 O -0.457 6.457 21 C -0.087 4.087 22 C -0.055 4.055 23 N -0.308 5.308 24 C -0.026 4.026 25 N -0.195 5.195 26 H 0.306 0.694 27 N -0.167 5.167 28 C -0.027 4.027 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.264 0.736 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.284 0.716 40 H 0.080 0.920 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.385 -30.504 -3.526 33.497 hybrid contribution 0.873 0.641 0.435 1.167 sum 14.257 -29.863 -3.091 33.236 Atomic orbital electron populations 1.70202 1.08078 1.28569 1.48076 1.26172 0.95973 1.03434 0.93708 0.84868 0.78690 0.76119 0.78021 1.17747 1.19892 1.20089 1.23232 0.95410 0.91674 1.58791 0.89613 1.85689 1.10737 0.99500 1.97052 1.23289 1.03371 0.93348 1.06756 1.19924 0.85410 0.86159 0.75317 1.90694 1.17450 1.85834 1.50960 1.48374 1.08490 1.04848 1.73366 1.22751 0.77133 1.00500 1.03081 1.23097 0.99459 0.90351 1.02530 1.21782 0.92949 0.85018 0.96203 0.88592 1.45673 1.64596 1.09831 1.15418 1.20761 0.75767 0.84728 0.87951 1.90751 1.50053 1.84608 1.20325 1.20038 1.05604 0.86398 0.96652 1.23793 0.88097 0.96349 0.97254 1.70369 1.18711 1.18038 1.23688 1.26959 0.93298 0.90783 0.91533 1.48032 1.04579 1.25762 1.41102 0.69377 1.77838 1.15977 1.06252 1.16647 1.22327 0.98856 0.80458 1.01071 0.92008 0.87363 0.86794 0.88335 0.89553 0.85490 0.87644 0.73612 0.83707 0.83020 0.71629 0.92014 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.64 13.22 21.65 0.29 -56.35 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 4 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.14 9.50 67.95 0.65 -30.49 16 8 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 9 S -0.16 -8.92 20.57 -56.49 -1.16 -10.08 16 10 C -0.12 -4.76 5.16 71.24 0.37 -4.39 16 11 C 0.54 21.84 7.87 87.66 0.69 22.53 16 12 O -0.57 -28.99 16.19 -3.01 -0.05 -29.04 16 13 N -0.62 -17.59 3.33 -811.80 -2.70 -20.29 16 14 C 0.09 1.45 6.69 86.86 0.58 2.03 16 15 C -0.12 -1.07 6.69 31.99 0.21 -0.86 16 16 C 0.15 2.41 3.24 46.18 0.15 2.56 16 17 H 0.10 1.85 7.69 -2.39 -0.02 1.83 16 18 N -0.70 -8.73 5.13 -436.92 -2.24 -10.97 16 19 C 0.52 9.83 7.82 87.66 0.69 10.52 16 20 O -0.58 -17.40 15.76 -3.04 -0.05 -17.45 16 21 C -0.05 -0.58 6.33 29.10 0.18 -0.40 16 22 C 0.23 4.62 6.63 138.63 0.92 5.54 16 23 N -0.58 -12.06 11.19 -191.80 -2.15 -14.21 16 24 C 0.27 3.30 13.13 180.36 2.37 5.67 16 25 N -0.48 -5.77 7.45 -60.49 -0.45 -6.22 16 26 H 0.46 1.85 8.96 -213.09 -1.91 -0.06 16 27 N -0.34 -6.70 12.80 -51.33 -0.66 -7.36 16 28 C 0.10 2.60 6.62 86.73 0.57 3.18 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 31 H 0.11 4.07 7.85 -2.40 -0.02 4.05 16 32 H 0.10 1.45 7.48 -2.39 -0.02 1.43 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.11 0.63 8.00 -2.39 -0.02 0.61 16 36 H 0.42 1.85 8.52 -92.71 -0.79 1.06 16 37 H 0.15 1.22 8.14 -2.38 -0.02 1.21 16 38 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.27 0.19 8.06 -2.91 -0.02 0.17 16 40 H 0.06 1.75 8.03 -2.39 -0.02 1.73 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -100.61 371.22 -0.90 -101.51 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -1.61 Total: 7.83 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 7.84 Total: 17.02 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -7.91 Total: -115.40 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -0.10 Total: -46.49 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.16 Total: -10.08 kcal Total: -100.61 -0.90 -101.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295003869.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.128 kcal (2) G-P(sol) polarization free energy of solvation -100.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds