Wall clock time and date at job start Tue Mar 31 2020 22:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86799 * 119.99896 * 2 1 4 4 H 1.48492 * 109.47557 * 270.00610 * 3 2 1 5 5 H 1.48508 * 109.46953 * 30.00520 * 3 2 1 6 6 H 1.48503 * 109.46993 * 150.00079 * 3 2 1 7 7 C 1.38799 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99948 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99762 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47092 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00031 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00282 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.64355 * 5.12578 * 13 11 10 15 15 C 1.54910 * 104.82925 * 155.84005 * 14 13 11 16 16 C 1.55398 * 101.66894 * 36.92430 * 15 14 13 17 17 C 1.47020 * 125.64760 * 185.08741 * 13 11 10 18 18 H 1.08998 * 109.88605 * 300.66508 * 17 13 11 19 19 C 1.53005 * 109.88281 * 61.67932 * 17 13 11 20 20 N 1.46498 * 109.46694 * 185.40316 * 19 17 13 21 21 C 1.34781 * 119.99553 * 175.02711 * 20 19 17 22 22 O 1.21547 * 120.00019 * 359.97438 * 21 20 19 23 23 C 1.47872 * 119.99603 * 179.97438 * 21 20 19 24 24 N 1.34550 * 126.04537 * 180.02562 * 23 21 20 25 25 C 1.30867 * 107.26859 * 179.97438 * 24 23 21 26 26 N 1.34581 * 107.62598 * 359.97438 * 25 24 23 27 27 H 0.96996 * 125.74758 * 180.02562 * 26 25 24 28 28 N 1.28844 * 108.50444 * 0.02562 * 26 25 24 29 29 H 0.97000 * 119.99925 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46915 * 60.00572 * 10 9 7 31 31 H 1.08995 * 109.47161 * 300.00521 * 10 9 7 32 32 H 1.09000 * 110.36986 * 274.67183 * 14 13 11 33 33 H 1.09004 * 110.37175 * 37.00177 * 14 13 11 34 34 H 1.08999 * 111.00918 * 155.08728 * 15 14 13 35 35 H 1.09006 * 111.00286 * 278.93594 * 15 14 13 36 36 H 1.09005 * 110.85434 * 206.30654 * 16 15 14 37 37 H 1.08991 * 110.69497 * 82.94961 * 16 15 14 38 38 H 1.08996 * 109.47061 * 65.40019 * 19 17 13 39 39 H 1.09001 * 109.46654 * 305.39780 * 19 17 13 40 40 H 0.97003 * 120.00322 * 355.03014 * 20 19 17 41 41 H 1.08001 * 126.18706 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0007 14 6 4.3114 -6.2478 0.1079 15 6 4.7573 -7.6179 0.6768 16 6 3.7712 -8.5881 -0.0312 17 6 2.4702 -7.7611 -0.1046 18 1 1.8112 -8.0329 0.7199 19 6 1.7663 -8.0159 -1.4389 20 7 1.2838 -9.3985 -1.4802 21 6 0.5420 -9.8225 -2.5226 22 8 0.2729 -9.0576 -3.4280 23 6 0.0555 -11.2183 -2.5645 24 7 -0.6894 -11.7681 -3.5408 25 6 -0.9090 -13.0142 -3.2069 26 7 -0.3003 -13.2332 -2.0268 27 1 -0.2954 -14.0714 -1.5386 28 7 0.2750 -12.1420 -1.6547 29 1 -0.4850 0.8400 0.0004 30 1 3.1244 -3.7314 0.8895 31 1 3.1245 -3.7313 -0.8904 32 1 4.7537 -6.0830 -0.8746 33 1 4.5906 -5.4448 0.7901 34 1 5.7886 -7.8384 0.4014 35 1 4.6274 -7.6528 1.7585 36 1 3.6215 -9.4904 0.5619 37 1 4.1268 -8.8369 -1.0310 38 1 2.4675 -7.8511 -2.2569 39 1 0.9224 -7.3334 -1.5406 40 1 1.4982 -10.0089 -0.7574 41 1 -1.4756 -13.7365 -3.7759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296459711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:53 Heat of formation + Delta-G solvation = 25.156298 kcal Electronic energy + Delta-G solvation = -26053.349104 eV Core-core repulsion = 22096.742705 eV Total energy + Delta-G solvation = -3956.606399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.87996 -40.29454 -39.29176 -37.29032 -34.96823 -33.81637 -32.40201 -32.18198 -31.74879 -30.34220 -28.60412 -26.25422 -25.46815 -24.30531 -23.30726 -22.67481 -21.29535 -20.74181 -19.51640 -18.94180 -17.79884 -17.47605 -17.01800 -16.76316 -16.47367 -15.57536 -15.24329 -15.17968 -14.89097 -14.77589 -14.40852 -14.09315 -13.88696 -13.74068 -13.25612 -12.94651 -12.67382 -12.62294 -12.50681 -12.31551 -11.73232 -11.47273 -11.17042 -11.10601 -11.03923 -11.01753 -10.99083 -10.91094 -10.73958 -10.42414 -10.16671 -9.79422 -9.45859 -9.20293 -9.03895 -8.59112 -8.20348 -6.47268 -6.18727 -3.89376 0.95441 1.76422 2.14467 2.51762 2.99089 3.05005 3.14148 3.24716 3.28300 3.32503 3.61893 3.91737 4.06636 4.20973 4.25779 4.31754 4.49973 4.58633 4.87895 5.05624 5.09360 5.15480 5.16288 5.43721 5.47923 5.53099 5.55815 5.58539 5.66069 5.79078 5.81485 5.88185 5.93897 5.98407 6.12007 6.15765 6.23530 6.45316 7.13867 7.58403 7.61388 7.63212 7.97234 8.37879 8.53331 9.26342 10.88677 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018139 B = 0.002238 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.272959 B =12505.763865 C =13663.229068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.508 6.508 13 N -0.620 5.620 14 C 0.100 3.900 15 C -0.131 4.131 16 C -0.131 4.131 17 C 0.130 3.870 18 H 0.082 0.918 19 C 0.109 3.891 20 N -0.708 5.708 21 C 0.611 3.389 22 O -0.501 6.501 23 C 0.157 3.843 24 N -0.461 5.461 25 C 0.197 3.803 26 N -0.399 5.399 27 H 0.452 0.548 28 N -0.278 5.278 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.405 0.595 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.123 -30.538 -0.061 31.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.382 6.382 13 N -0.358 5.358 14 C -0.023 4.023 15 C -0.169 4.169 16 C -0.169 4.169 17 C 0.025 3.975 18 H 0.100 0.900 19 C -0.016 4.016 20 N -0.361 5.361 21 C 0.392 3.608 22 O -0.370 6.370 23 C -0.124 4.124 24 N -0.185 5.185 25 C -0.101 4.101 26 N -0.122 5.122 27 H 0.298 0.702 28 N -0.120 5.120 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.240 0.760 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.167 -29.566 -0.551 30.207 hybrid contribution 1.891 0.087 0.528 1.966 sum 8.058 -29.479 -0.023 30.561 Atomic orbital electron populations 1.70023 1.05942 1.27446 1.46813 1.24998 0.95031 0.99027 0.94569 0.86166 0.79373 0.81580 0.78357 1.20255 1.20777 1.19712 1.22851 0.94879 0.91602 1.58963 0.90925 1.85444 1.04810 0.96324 1.96705 1.23517 1.06551 0.94789 1.04855 1.20110 0.85717 0.85468 0.74986 1.90728 1.14889 1.85017 1.47528 1.48503 1.07180 1.04734 1.75426 1.22327 0.80285 0.98416 1.01276 1.22813 0.99382 0.93994 1.00744 1.22830 0.94081 0.97999 1.01996 1.21592 0.96619 0.82461 0.96817 0.89954 1.21859 1.00416 0.81737 0.97539 1.45526 1.53559 1.13686 1.23344 1.16246 0.78729 0.83023 0.82841 1.90891 1.55808 1.53691 1.36655 1.23878 1.01953 0.96361 0.90219 1.71340 1.15371 1.05449 1.26307 1.26787 0.99682 0.95585 0.88030 1.45124 1.37126 1.11729 1.18228 0.70157 1.74233 1.18602 0.94055 1.25086 0.92182 0.89294 0.89132 0.91195 0.90039 0.89720 0.90404 0.89874 0.90111 0.90865 0.88998 0.75969 0.75207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.02 5.25 36.00 0.19 -2.83 16 11 C 0.55 10.54 7.59 -10.99 -0.08 10.46 16 12 O -0.51 -11.77 15.04 5.56 0.08 -11.69 16 13 N -0.62 -8.67 3.06 -163.01 -0.50 -9.17 16 14 C 0.10 1.00 6.65 -2.53 -0.02 0.99 16 15 C -0.13 -0.92 7.09 -24.45 -0.17 -1.10 16 16 C -0.13 -0.95 6.13 -24.76 -0.15 -1.10 16 17 C 0.13 1.48 2.91 -66.95 -0.19 1.29 16 18 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 19 C 0.11 1.45 5.08 -4.04 -0.02 1.43 16 20 N -0.71 -8.16 5.41 -61.24 -0.33 -8.49 16 21 C 0.61 8.81 7.83 -12.31 -0.10 8.71 16 22 O -0.50 -9.42 17.09 5.32 0.09 -9.33 16 23 C 0.16 1.90 7.96 -156.35 -1.24 0.66 16 24 N -0.46 -5.37 11.41 -12.36 -0.14 -5.51 16 25 C 0.20 1.09 13.14 -90.49 -1.19 -0.10 16 26 N -0.40 -1.79 6.93 29.56 0.20 -1.59 16 27 H 0.45 -0.09 8.96 -190.22 -1.71 -1.80 16 28 N -0.28 -2.40 11.98 32.07 0.38 -2.01 16 29 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.09 1.68 7.76 -51.91 -0.40 1.28 16 31 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.81 7.51 -51.93 -0.39 0.42 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.56 7.76 -51.93 -0.40 0.16 16 38 H 0.07 0.97 8.02 -51.93 -0.42 0.55 16 39 H 0.09 1.63 6.87 -51.93 -0.36 1.27 16 40 H 0.41 3.51 7.97 -40.82 -0.33 3.19 16 41 H 0.23 0.02 8.06 -52.49 -0.42 -0.40 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -41.63 368.09 -10.45 -52.08 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -6.50 Total: -2.17 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.78 Total: 5.33 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.35 Total: -52.53 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.17 Total: -21.02 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -41.63 -10.45 -52.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296459711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.233 kcal (2) G-P(sol) polarization free energy of solvation -41.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds