Wall clock time and date at job start Tue Mar 31 2020 22:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86799 * 119.99896 * 2 1 4 4 H 1.48492 * 109.47557 * 270.00610 * 3 2 1 5 5 H 1.48508 * 109.46953 * 30.00520 * 3 2 1 6 6 H 1.48503 * 109.46993 * 150.00079 * 3 2 1 7 7 C 1.38799 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99948 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99762 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47092 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00031 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00282 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.64355 * 5.12578 * 13 11 10 15 15 C 1.54910 * 104.82925 * 155.84005 * 14 13 11 16 16 C 1.55398 * 101.66894 * 36.92430 * 15 14 13 17 17 C 1.47020 * 125.64760 * 185.08741 * 13 11 10 18 18 H 1.08998 * 109.88605 * 300.66508 * 17 13 11 19 19 C 1.53005 * 109.88281 * 61.67932 * 17 13 11 20 20 N 1.46498 * 109.46694 * 185.40316 * 19 17 13 21 21 C 1.34781 * 119.99553 * 175.02711 * 20 19 17 22 22 O 1.21547 * 120.00019 * 359.97438 * 21 20 19 23 23 C 1.47872 * 119.99603 * 179.97438 * 21 20 19 24 24 N 1.34550 * 126.04537 * 180.02562 * 23 21 20 25 25 C 1.30867 * 107.26859 * 179.97438 * 24 23 21 26 26 N 1.34581 * 107.62598 * 359.97438 * 25 24 23 27 27 H 0.96996 * 125.74758 * 180.02562 * 26 25 24 28 28 N 1.28844 * 108.50444 * 0.02562 * 26 25 24 29 29 H 0.97000 * 119.99925 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46915 * 60.00572 * 10 9 7 31 31 H 1.08995 * 109.47161 * 300.00521 * 10 9 7 32 32 H 1.09000 * 110.36986 * 274.67183 * 14 13 11 33 33 H 1.09004 * 110.37175 * 37.00177 * 14 13 11 34 34 H 1.08999 * 111.00918 * 155.08728 * 15 14 13 35 35 H 1.09006 * 111.00286 * 278.93594 * 15 14 13 36 36 H 1.09005 * 110.85434 * 206.30654 * 16 15 14 37 37 H 1.08991 * 110.69497 * 82.94961 * 16 15 14 38 38 H 1.08996 * 109.47061 * 65.40019 * 19 17 13 39 39 H 1.09001 * 109.46654 * 305.39780 * 19 17 13 40 40 H 0.97003 * 120.00322 * 355.03014 * 20 19 17 41 41 H 1.08001 * 126.18706 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0007 14 6 4.3114 -6.2478 0.1079 15 6 4.7573 -7.6179 0.6768 16 6 3.7712 -8.5881 -0.0312 17 6 2.4702 -7.7611 -0.1046 18 1 1.8112 -8.0329 0.7199 19 6 1.7663 -8.0159 -1.4389 20 7 1.2838 -9.3985 -1.4802 21 6 0.5420 -9.8225 -2.5226 22 8 0.2729 -9.0576 -3.4280 23 6 0.0555 -11.2183 -2.5645 24 7 -0.6894 -11.7681 -3.5408 25 6 -0.9090 -13.0142 -3.2069 26 7 -0.3003 -13.2332 -2.0268 27 1 -0.2954 -14.0714 -1.5386 28 7 0.2750 -12.1420 -1.6547 29 1 -0.4850 0.8400 0.0004 30 1 3.1244 -3.7314 0.8895 31 1 3.1245 -3.7313 -0.8904 32 1 4.7537 -6.0830 -0.8746 33 1 4.5906 -5.4448 0.7901 34 1 5.7886 -7.8384 0.4014 35 1 4.6274 -7.6528 1.7585 36 1 3.6215 -9.4904 0.5619 37 1 4.1268 -8.8369 -1.0310 38 1 2.4675 -7.8511 -2.2569 39 1 0.9224 -7.3334 -1.5406 40 1 1.4982 -10.0089 -0.7574 41 1 -1.4756 -13.7365 -3.7759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296459711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:52 Heat of formation + Delta-G solvation = -7.985670 kcal Electronic energy + Delta-G solvation = -26054.786247 eV Core-core repulsion = 22096.742705 eV Total energy + Delta-G solvation = -3958.043543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.50291 -41.44660 -40.48566 -38.57201 -36.07528 -34.59526 -34.49311 -33.13779 -32.67029 -31.29246 -30.03153 -27.67794 -27.15020 -25.19185 -23.97285 -23.62803 -22.14203 -21.71222 -20.52166 -19.91666 -19.48110 -18.52565 -18.18359 -17.70819 -17.46594 -16.89349 -16.65612 -16.48138 -16.27819 -15.86384 -15.81543 -15.38422 -15.05174 -14.89361 -14.53190 -14.05992 -13.98539 -13.72902 -13.65572 -13.27454 -13.17510 -12.97424 -12.88780 -12.62344 -12.13379 -11.99469 -11.82704 -11.74715 -11.73149 -11.62646 -11.47349 -11.15086 -10.98882 -10.82756 -10.33155 -10.28772 -9.78382 -8.69397 -8.35273 -6.14367 0.18924 1.12359 1.18608 1.37609 1.42296 1.48470 1.55065 1.60412 1.90869 2.16733 2.20203 2.26724 2.98738 3.13010 3.22390 3.45963 3.48191 3.55981 3.77789 3.90860 4.02969 4.05983 4.18934 4.28375 4.38519 4.44102 4.62311 4.71178 4.81236 4.83486 4.92584 5.00314 5.05701 5.15570 5.22853 5.35784 5.40468 5.40846 5.91629 6.18937 6.23434 6.34796 6.88168 7.03082 7.05429 7.08686 8.74128 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018139 B = 0.002238 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.272959 B =12505.763865 C =13663.229068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.119 4.119 11 C 0.545 3.455 12 O -0.561 6.561 13 N -0.612 5.612 14 C 0.085 3.915 15 C -0.118 4.118 16 C -0.119 4.119 17 C 0.128 3.872 18 H 0.078 0.922 19 C 0.117 3.883 20 N -0.687 5.687 21 C 0.606 3.394 22 O -0.560 6.560 23 C 0.123 3.877 24 N -0.519 5.519 25 C 0.221 3.779 26 N -0.374 5.374 27 H 0.475 0.525 28 N -0.267 5.267 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.422 0.578 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.267 -33.319 0.872 35.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.270 4.270 11 C 0.333 3.667 12 O -0.439 6.439 13 N -0.347 5.347 14 C -0.037 4.037 15 C -0.155 4.155 16 C -0.156 4.156 17 C 0.024 3.976 18 H 0.096 0.904 19 C -0.008 4.008 20 N -0.341 5.341 21 C 0.389 3.611 22 O -0.435 6.435 23 C -0.156 4.156 24 N -0.245 5.245 25 C -0.076 4.076 26 N -0.101 5.101 27 H 0.327 0.673 28 N -0.111 5.111 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.260 0.740 41 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 9.388 -32.450 0.442 33.784 hybrid contribution 0.922 0.689 0.249 1.177 sum 10.310 -31.762 0.691 33.400 Atomic orbital electron populations 1.70200 1.08062 1.28626 1.47996 1.26185 0.96000 1.03467 0.93718 0.84917 0.78241 0.75794 0.78790 1.19381 1.20264 1.17908 1.23184 0.95337 0.91756 1.58896 0.89767 1.85661 1.10660 0.99470 1.97037 1.23307 1.03356 0.93857 1.06457 1.19854 0.85514 0.86105 0.75215 1.90708 1.17155 1.85704 1.50351 1.48452 1.08658 1.04726 1.72853 1.22762 0.77379 1.01000 1.02541 1.22828 1.00688 0.91154 1.00876 1.22871 0.91128 0.98254 1.03389 1.21827 0.99074 0.81568 0.95150 0.90407 1.21624 0.98513 0.81705 0.98928 1.45310 1.52550 1.13080 1.23157 1.16705 0.78103 0.83972 0.82310 1.90842 1.58139 1.55661 1.38874 1.23327 1.04440 0.95840 0.92025 1.71253 1.17033 1.08388 1.27786 1.27675 0.97889 0.94383 0.87627 1.45162 1.35360 1.11524 1.18045 0.67293 1.74122 1.18343 0.94518 1.24102 0.92002 0.87182 0.87659 0.89937 0.89661 0.86593 0.89775 0.86799 0.89144 0.90904 0.94254 0.74009 0.69991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.58 13.22 21.65 0.29 -57.30 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 1.00 44.51 29.55 68.60 2.03 46.53 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.54 -31.83 9.50 67.95 0.65 -31.19 16 8 H 0.08 4.55 7.80 -2.91 -0.02 4.52 16 9 S -0.16 -9.00 20.57 -56.49 -1.16 -10.17 16 10 C -0.12 -4.98 5.25 71.24 0.37 -4.60 16 11 C 0.54 21.71 7.59 87.66 0.66 22.38 16 12 O -0.56 -27.87 15.04 -3.03 -0.05 -27.92 16 13 N -0.61 -16.85 3.06 -788.05 -2.41 -19.26 16 14 C 0.08 1.48 6.65 86.86 0.58 2.06 16 15 C -0.12 -1.15 7.09 32.07 0.23 -0.92 16 16 C -0.12 -1.30 6.13 31.87 0.20 -1.11 16 17 C 0.13 2.84 2.91 45.35 0.13 2.97 16 18 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 19 C 0.12 3.29 5.08 86.38 0.44 3.73 16 20 N -0.69 -16.34 5.41 -465.94 -2.52 -18.86 16 21 C 0.61 18.56 7.83 86.79 0.68 19.24 16 22 O -0.56 -23.03 17.09 -3.86 -0.07 -23.10 16 23 C 0.12 3.00 7.96 137.13 1.09 4.09 16 24 N -0.52 -11.93 11.41 -193.03 -2.20 -14.13 16 25 C 0.22 1.84 13.14 180.30 2.37 4.20 16 26 N -0.37 -2.22 6.93 -60.38 -0.42 -2.64 16 27 H 0.47 -2.08 8.96 -219.80 -1.97 -4.05 16 28 N -0.27 -4.14 11.98 -52.44 -0.63 -4.77 16 29 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 30 H 0.11 4.10 7.76 -2.39 -0.02 4.09 16 31 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.46 7.51 -2.39 -0.02 1.44 16 34 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.09 0.91 7.76 -2.39 -0.02 0.89 16 38 H 0.07 2.02 8.02 -2.39 -0.02 2.00 16 39 H 0.04 1.55 6.87 -2.39 -0.02 1.53 16 40 H 0.42 6.96 7.97 -92.71 -0.74 6.22 16 41 H 0.28 -1.23 8.06 -2.91 -0.02 -1.25 16 Total: -1.00 -101.14 368.09 -0.89 -102.04 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -1.61 Total: 7.62 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 7.86 Total: 21.96 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -7.90 Total: -116.97 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.11 Total: -51.02 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.17 kcal Total: -101.14 -0.89 -102.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296459711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.053 kcal (2) G-P(sol) polarization free energy of solvation -101.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds