Wall clock time and date at job start Tue Mar 31 2020 22:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48505 * 109.47465 * 240.00136 * 3 2 1 5 5 H 1.48507 * 109.47011 * 120.00187 * 3 2 1 6 6 H 1.48497 * 109.47338 * 0.02562 * 3 2 1 7 7 C 1.38797 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00128 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99794 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00278 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47508 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00053 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99950 * 180.02562 * 11 10 9 14 14 C 1.47420 * 125.65187 * 354.65059 * 13 11 10 15 15 C 1.54684 * 104.94283 * 204.07594 * 14 13 11 16 16 C 1.55161 * 101.67627 * 323.27597 * 15 14 13 17 17 C 1.47026 * 125.64587 * 174.95740 * 13 11 10 18 18 H 1.08999 * 109.87840 * 59.48580 * 17 13 11 19 19 C 1.53006 * 109.88242 * 298.47447 * 17 13 11 20 20 N 1.46495 * 109.46764 * 175.33173 * 19 17 13 21 21 C 1.34777 * 119.99902 * 184.90465 * 20 19 17 22 22 O 1.21564 * 119.99983 * 359.97438 * 21 20 19 23 23 C 1.47867 * 120.00335 * 179.97438 * 21 20 19 24 24 N 1.34550 * 126.04806 * 180.02562 * 23 21 20 25 25 C 1.30871 * 107.26865 * 179.97438 * 24 23 21 26 26 N 1.34591 * 107.62532 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.74596 * 179.97438 * 26 25 24 28 28 N 1.28852 * 108.50074 * 359.72953 * 26 25 24 29 29 H 0.96997 * 120.00551 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46982 * 300.00326 * 10 9 7 31 31 H 1.09005 * 109.46983 * 59.99786 * 10 9 7 32 32 H 1.09003 * 110.36102 * 323.00481 * 14 13 11 33 33 H 1.09001 * 110.36772 * 85.32329 * 14 13 11 34 34 H 1.09003 * 111.10347 * 205.10314 * 15 14 13 35 35 H 1.09006 * 110.85059 * 81.32984 * 15 14 13 36 36 H 1.09004 * 110.71643 * 276.97088 * 16 15 14 37 37 H 1.08999 * 110.87356 * 153.77299 * 16 15 14 38 38 H 1.08994 * 109.47184 * 295.33233 * 19 17 13 39 39 H 1.09001 * 109.47047 * 55.32999 * 19 17 13 40 40 H 0.97002 * 120.00350 * 4.90364 * 20 19 17 41 41 H 1.08001 * 126.19127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 3.1041 1.6964 1.2125 6 1 1.2853 2.7465 0.0006 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 4.3111 -6.2481 -0.1114 15 6 4.7582 -7.6178 -0.6744 16 6 3.7730 -8.5850 0.0336 17 6 2.4701 -7.7611 0.1037 18 1 1.8144 -8.0333 -0.7233 19 6 1.7608 -8.0154 1.4354 20 7 1.2939 -9.4031 1.4827 21 6 0.5516 -9.8293 2.5238 22 8 0.2700 -9.0622 3.4238 23 6 0.0798 -11.2299 2.5713 24 7 -0.6647 -11.7819 3.5467 25 6 -0.8700 -13.0320 3.2184 26 7 -0.2529 -13.2512 2.0426 27 1 -0.2371 -14.0919 1.5590 28 7 0.3090 -12.1548 1.6651 29 1 -0.4851 -0.8400 -0.0004 30 1 3.1245 -3.7313 -0.8906 31 1 3.1244 -3.7313 0.8895 32 1 4.5888 -5.4470 -0.7964 33 1 4.7555 -6.0805 0.8697 34 1 5.7891 -7.8383 -0.3976 35 1 4.6303 -7.6529 -1.7564 36 1 4.1275 -8.8320 1.0344 37 1 3.6259 -9.4899 -0.5560 38 1 2.4550 -7.8374 2.2566 39 1 0.9087 -7.3419 1.5276 40 1 1.5188 -10.0154 0.7647 41 1 -1.4323 -13.7569 3.7883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296459712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:56 Heat of formation + Delta-G solvation = 19.723850 kcal Electronic energy + Delta-G solvation = -26089.773482 eV Core-core repulsion = 22132.931514 eV Total energy + Delta-G solvation = -3956.841968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.90715 -40.37470 -39.34895 -37.39171 -35.02180 -33.84502 -32.50585 -32.22753 -31.83518 -30.41607 -28.73071 -26.30959 -24.85733 -24.33366 -23.33902 -22.73599 -21.34582 -20.77930 -19.55731 -19.01384 -18.22835 -17.62251 -17.10749 -16.79446 -16.62834 -15.67115 -15.28903 -15.25968 -15.09942 -14.61872 -14.14589 -14.06823 -13.87984 -13.80323 -13.32376 -13.02523 -12.74876 -12.67228 -12.46769 -12.32612 -11.87886 -11.79322 -11.51715 -11.21858 -11.14388 -11.06139 -10.94245 -10.89853 -10.46526 -10.19653 -10.15531 -9.57721 -9.54678 -9.26215 -8.99287 -8.67445 -8.20011 -6.65069 -6.59707 -3.97732 0.92242 1.73294 2.11287 2.45541 2.88384 2.94537 3.10374 3.34522 3.39802 3.46429 3.59816 3.87991 4.03627 4.16426 4.26231 4.28436 4.46093 4.53232 4.81587 4.96814 5.01338 5.10401 5.24746 5.36631 5.42647 5.46551 5.48958 5.50497 5.57453 5.73023 5.76184 5.81117 5.84542 5.92778 6.02372 6.06722 6.20630 6.37273 7.09648 7.52491 7.55259 7.93074 7.93657 8.42052 8.52367 9.29491 10.84194 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.002241 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.329455 B =12492.541958 C =13641.491614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.285 1.285 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.607 4.607 8 H 0.066 0.934 9 S -0.115 6.115 10 C -0.124 4.124 11 C 0.547 3.453 12 O -0.509 6.509 13 N -0.619 5.619 14 C 0.099 3.901 15 C -0.131 4.131 16 C -0.131 4.131 17 C 0.130 3.870 18 H 0.083 0.917 19 C 0.109 3.891 20 N -0.708 5.708 21 C 0.611 3.389 22 O -0.501 6.501 23 C 0.157 3.843 24 N -0.460 5.460 25 C 0.198 3.802 26 N -0.399 5.399 27 H 0.452 0.548 28 N -0.278 5.278 29 H 0.278 0.722 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.406 0.594 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.774 -31.134 0.103 32.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.176 4.176 3 Si 0.910 3.090 4 H -0.212 1.212 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.755 4.755 8 H 0.084 0.916 9 S 0.111 5.889 10 C -0.275 4.275 11 C 0.336 3.664 12 O -0.382 6.382 13 N -0.357 5.357 14 C -0.024 4.024 15 C -0.169 4.169 16 C -0.169 4.169 17 C 0.025 3.975 18 H 0.101 0.899 19 C -0.015 4.015 20 N -0.361 5.361 21 C 0.392 3.608 22 O -0.371 6.371 23 C -0.124 4.124 24 N -0.185 5.185 25 C -0.100 4.100 26 N -0.122 5.122 27 H 0.299 0.701 28 N -0.120 5.120 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.241 0.759 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.753 -28.632 0.593 29.423 hybrid contribution 1.735 -2.582 -0.532 3.156 sum 8.488 -31.214 0.061 32.347 Atomic orbital electron populations 1.70793 1.06701 1.31008 1.43243 1.26057 0.96334 1.02136 0.93042 0.83330 0.74757 0.74213 0.76685 1.21155 1.21122 1.20285 1.23683 0.95987 0.92137 1.63697 0.91615 1.84864 1.07999 0.98811 1.97215 1.23299 1.05087 0.93959 1.05168 1.20074 0.85752 0.85481 0.75106 1.90728 1.14880 1.85017 1.47604 1.48471 1.07222 1.04773 1.75266 1.22301 0.80176 0.98524 1.01370 1.22732 0.99461 0.93914 1.00793 1.22782 0.93993 0.98045 1.02073 1.21607 0.96661 0.82308 0.96897 0.89930 1.21841 1.00563 0.81601 0.97506 1.45517 1.53678 1.13204 1.23734 1.16250 0.78727 0.83078 0.82765 1.90896 1.55430 1.53793 1.36936 1.23861 1.01983 0.96306 0.90288 1.71341 1.15510 1.05376 1.26232 1.26795 0.99489 0.95529 0.88229 1.45130 1.37297 1.11385 1.18384 0.70137 1.74234 1.18945 0.93854 1.24936 0.90957 0.89032 0.88866 0.90040 0.91132 0.89603 0.90380 0.90069 0.89815 0.90836 0.89053 0.75946 0.75182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.89 13.67 55.49 0.76 -27.14 16 2 C 0.03 1.03 5.49 -17.43 -0.10 0.93 16 3 Si 1.08 25.22 29.92 -169.99 -5.09 20.13 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.61 -17.69 9.50 30.94 0.29 -17.39 16 8 H 0.07 1.82 7.80 -52.49 -0.41 1.42 16 9 S -0.12 -3.16 19.60 -107.50 -2.11 -5.27 16 10 C -0.12 -2.56 5.25 36.00 0.19 -2.37 16 11 C 0.55 10.46 7.59 -10.99 -0.08 10.38 16 12 O -0.51 -11.69 15.03 5.56 0.08 -11.61 16 13 N -0.62 -8.57 3.07 -163.16 -0.50 -9.07 16 14 C 0.10 0.98 6.64 -2.65 -0.02 0.97 16 15 C -0.13 -0.90 7.07 -24.70 -0.17 -1.07 16 16 C -0.13 -0.93 6.09 -24.90 -0.15 -1.08 16 17 C 0.13 1.47 2.92 -66.95 -0.20 1.27 16 18 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 19 C 0.11 1.44 5.08 -4.04 -0.02 1.42 16 20 N -0.71 -8.07 5.41 -61.24 -0.33 -8.40 16 21 C 0.61 8.74 7.83 -12.32 -0.10 8.65 16 22 O -0.50 -9.38 17.09 5.31 0.09 -9.29 16 23 C 0.16 1.88 7.96 -156.35 -1.24 0.64 16 24 N -0.46 -5.32 11.41 -12.36 -0.14 -5.46 16 25 C 0.20 1.07 13.14 -90.47 -1.19 -0.12 16 26 N -0.40 -1.75 6.93 29.57 0.21 -1.55 16 27 H 0.45 -0.14 8.96 -190.21 -1.70 -1.84 16 28 N -0.28 -2.37 11.98 32.07 0.38 -1.98 16 29 H 0.28 8.98 7.13 -40.82 -0.29 8.69 16 30 H 0.09 1.74 7.76 -51.91 -0.40 1.34 16 31 H 0.09 1.81 8.14 -51.91 -0.42 1.39 16 32 H 0.08 0.80 7.51 -51.93 -0.39 0.41 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.55 7.78 -51.93 -0.40 0.15 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 39 H 0.09 1.61 6.88 -51.93 -0.36 1.25 16 40 H 0.41 3.46 7.95 -40.82 -0.32 3.13 16 41 H 0.23 0.00 8.06 -52.49 -0.42 -0.42 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -42.34 366.70 -10.36 -52.70 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.46 Total: -0.80 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -2.79 Total: 2.21 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.38 Total: -53.60 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.17 Total: -20.90 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.09 Total: 20.13 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -42.34 -10.36 -52.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296459712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.424 kcal (2) G-P(sol) polarization free energy of solvation -42.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds