Wall clock time and date at job start Tue Mar 31 2020 22:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48505 * 109.47465 * 240.00136 * 3 2 1 5 5 H 1.48507 * 109.47011 * 120.00187 * 3 2 1 6 6 H 1.48497 * 109.47338 * 0.02562 * 3 2 1 7 7 C 1.38797 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00128 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99794 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00278 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47508 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00053 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99950 * 180.02562 * 11 10 9 14 14 C 1.47420 * 125.65187 * 354.65059 * 13 11 10 15 15 C 1.54684 * 104.94283 * 204.07594 * 14 13 11 16 16 C 1.55161 * 101.67627 * 323.27597 * 15 14 13 17 17 C 1.47026 * 125.64587 * 174.95740 * 13 11 10 18 18 H 1.08999 * 109.87840 * 59.48580 * 17 13 11 19 19 C 1.53006 * 109.88242 * 298.47447 * 17 13 11 20 20 N 1.46495 * 109.46764 * 175.33173 * 19 17 13 21 21 C 1.34777 * 119.99902 * 184.90465 * 20 19 17 22 22 O 1.21564 * 119.99983 * 359.97438 * 21 20 19 23 23 C 1.47867 * 120.00335 * 179.97438 * 21 20 19 24 24 N 1.34550 * 126.04806 * 180.02562 * 23 21 20 25 25 C 1.30871 * 107.26865 * 179.97438 * 24 23 21 26 26 N 1.34591 * 107.62532 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.74596 * 179.97438 * 26 25 24 28 28 N 1.28852 * 108.50074 * 359.72953 * 26 25 24 29 29 H 0.96997 * 120.00551 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46982 * 300.00326 * 10 9 7 31 31 H 1.09005 * 109.46983 * 59.99786 * 10 9 7 32 32 H 1.09003 * 110.36102 * 323.00481 * 14 13 11 33 33 H 1.09001 * 110.36772 * 85.32329 * 14 13 11 34 34 H 1.09003 * 111.10347 * 205.10314 * 15 14 13 35 35 H 1.09006 * 110.85059 * 81.32984 * 15 14 13 36 36 H 1.09004 * 110.71643 * 276.97088 * 16 15 14 37 37 H 1.08999 * 110.87356 * 153.77299 * 16 15 14 38 38 H 1.08994 * 109.47184 * 295.33233 * 19 17 13 39 39 H 1.09001 * 109.47047 * 55.32999 * 19 17 13 40 40 H 0.97002 * 120.00350 * 4.90364 * 20 19 17 41 41 H 1.08001 * 126.19127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 3.1041 1.6964 1.2125 6 1 1.2853 2.7465 0.0006 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 4.3111 -6.2481 -0.1114 15 6 4.7582 -7.6178 -0.6744 16 6 3.7730 -8.5850 0.0336 17 6 2.4701 -7.7611 0.1037 18 1 1.8144 -8.0333 -0.7233 19 6 1.7608 -8.0154 1.4354 20 7 1.2939 -9.4031 1.4827 21 6 0.5516 -9.8293 2.5238 22 8 0.2700 -9.0622 3.4238 23 6 0.0798 -11.2299 2.5713 24 7 -0.6647 -11.7819 3.5467 25 6 -0.8700 -13.0320 3.2184 26 7 -0.2529 -13.2512 2.0426 27 1 -0.2371 -14.0919 1.5590 28 7 0.3090 -12.1548 1.6651 29 1 -0.4851 -0.8400 -0.0004 30 1 3.1245 -3.7313 -0.8906 31 1 3.1244 -3.7313 0.8895 32 1 4.5888 -5.4470 -0.7964 33 1 4.7555 -6.0805 0.8697 34 1 5.7891 -7.8383 -0.3976 35 1 4.6303 -7.6529 -1.7564 36 1 4.1275 -8.8320 1.0344 37 1 3.6259 -9.4899 -0.5560 38 1 2.4550 -7.8374 2.2566 39 1 0.9087 -7.3419 1.5276 40 1 1.5188 -10.0154 0.7647 41 1 -1.4323 -13.7569 3.7883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296459712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:55 Heat of formation + Delta-G solvation = -14.044130 kcal Electronic energy + Delta-G solvation = -26091.237771 eV Core-core repulsion = 22132.931514 eV Total energy + Delta-G solvation = -3958.306257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.52132 -41.52311 -40.53291 -38.66018 -36.12022 -34.76042 -34.51279 -33.21156 -32.71854 -31.36706 -30.14147 -27.19616 -27.10208 -25.22926 -24.00968 -23.66972 -22.18412 -21.74020 -20.72528 -20.17497 -19.73295 -18.59393 -18.26151 -17.80733 -17.48996 -17.04052 -16.63662 -16.34986 -16.06281 -15.86058 -15.72460 -15.47311 -15.09123 -14.92901 -14.60653 -14.31961 -14.07875 -13.84763 -13.76713 -13.67205 -13.29478 -13.03201 -12.73767 -12.19189 -12.04521 -11.95575 -11.84678 -11.77852 -11.65987 -11.56648 -11.49835 -11.10542 -11.09503 -10.85045 -10.36973 -10.34119 -9.85779 -8.93863 -8.90163 -6.29592 0.16455 1.07545 1.10388 1.36383 1.48998 1.53103 1.60471 1.80363 1.85935 2.12106 2.15228 2.33535 3.01347 3.06251 3.11446 3.36293 3.44211 3.52470 3.72987 3.79401 4.00307 4.01057 4.08574 4.20471 4.29955 4.34784 4.57449 4.66168 4.76335 4.81382 4.88635 4.95854 5.01750 5.12183 5.20746 5.31177 5.34623 5.62614 5.89570 6.12650 6.20280 6.26230 6.85101 6.97950 7.00937 7.05446 8.49363 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.002241 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.329455 B =12492.541958 C =13641.491614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.021 4.021 3 Si 1.138 2.862 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.281 1.281 7 C -0.611 4.611 8 H 0.077 0.923 9 S -0.200 6.200 10 C -0.099 4.099 11 C 0.544 3.456 12 O -0.561 6.561 13 N -0.610 5.610 14 C 0.084 3.916 15 C -0.117 4.117 16 C -0.119 4.119 17 C 0.128 3.872 18 H 0.079 0.921 19 C 0.118 3.882 20 N -0.687 5.687 21 C 0.606 3.394 22 O -0.561 6.561 23 C 0.123 3.877 24 N -0.519 5.519 25 C 0.221 3.779 26 N -0.374 5.374 27 H 0.475 0.525 28 N -0.267 5.267 29 H 0.259 0.741 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.422 0.578 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.057 -34.155 -0.829 36.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.224 4.224 3 Si 0.955 3.045 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.206 1.206 7 C -0.759 4.759 8 H 0.095 0.905 9 S 0.027 5.973 10 C -0.250 4.250 11 C 0.332 3.668 12 O -0.439 6.439 13 N -0.345 5.345 14 C -0.038 4.038 15 C -0.155 4.155 16 C -0.156 4.156 17 C 0.024 3.976 18 H 0.097 0.903 19 C -0.007 4.007 20 N -0.341 5.341 21 C 0.389 3.611 22 O -0.435 6.435 23 C -0.157 4.157 24 N -0.245 5.245 25 C -0.075 4.075 26 N -0.101 5.101 27 H 0.327 0.673 28 N -0.111 5.111 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.260 0.740 41 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 10.115 -31.776 -0.398 33.350 hybrid contribution 0.738 -1.920 -0.253 2.072 sum 10.853 -33.696 -0.652 35.407 Atomic orbital electron populations 1.70914 1.08066 1.29952 1.45906 1.27906 0.96316 1.06504 0.91663 0.82714 0.73931 0.69320 0.78536 1.18485 1.18791 1.20580 1.24010 0.96508 0.92546 1.62818 0.90503 1.85141 1.13293 1.01389 1.97466 1.23159 1.01963 0.93170 1.06727 1.19792 0.85560 0.86048 0.75390 1.90711 1.17106 1.85674 1.50422 1.48433 1.08691 1.04750 1.72639 1.22740 0.77271 1.01121 1.02631 1.22751 1.00768 0.91054 1.00938 1.22826 0.91024 0.98322 1.03472 1.21847 0.99131 0.81390 0.95232 0.90342 1.21604 0.98621 0.81623 0.98883 1.45298 1.52667 1.12599 1.23529 1.16709 0.78087 0.84035 0.82235 1.90848 1.57777 1.55755 1.39164 1.23312 1.04488 0.95761 0.92093 1.71254 1.17174 1.08319 1.27716 1.27682 0.97697 0.94342 0.87817 1.45169 1.35539 1.11191 1.18179 0.67276 1.74124 1.18654 0.94332 1.23957 0.92972 0.86968 0.87464 0.89671 0.89869 0.86464 0.89739 0.89103 0.86713 0.90936 0.94288 0.73974 0.69976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.62 13.67 21.65 0.30 -59.33 16 2 C -0.02 -1.25 5.49 84.86 0.47 -0.78 16 3 Si 1.14 50.23 29.92 68.60 2.05 52.28 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.61 -36.11 9.50 67.95 0.65 -35.46 16 8 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 9 S -0.20 -11.46 19.60 -56.49 -1.11 -12.56 16 10 C -0.10 -4.13 5.25 71.23 0.37 -3.76 16 11 C 0.54 21.45 7.59 87.65 0.67 22.12 16 12 O -0.56 -27.55 15.03 -3.04 -0.05 -27.59 16 13 N -0.61 -16.54 3.07 -788.50 -2.42 -18.96 16 14 C 0.08 1.43 6.64 86.78 0.58 2.01 16 15 C -0.12 -1.10 7.07 31.91 0.23 -0.87 16 16 C -0.12 -1.26 6.09 31.78 0.19 -1.06 16 17 C 0.13 2.79 2.92 45.34 0.13 2.92 16 18 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 19 C 0.12 3.26 5.08 86.38 0.44 3.70 16 20 N -0.69 -16.09 5.41 -465.94 -2.52 -18.61 16 21 C 0.61 18.39 7.83 86.79 0.68 19.07 16 22 O -0.56 -22.90 17.09 -3.92 -0.07 -22.96 16 23 C 0.12 2.96 7.96 137.13 1.09 4.05 16 24 N -0.52 -11.81 11.41 -193.03 -2.20 -14.01 16 25 C 0.22 1.79 13.14 180.30 2.37 4.16 16 26 N -0.37 -2.13 6.93 -60.37 -0.42 -2.55 16 27 H 0.48 -2.19 8.96 -219.80 -1.97 -4.16 16 28 N -0.27 -4.07 11.98 -52.44 -0.63 -4.69 16 29 H 0.26 17.69 7.13 -92.71 -0.66 17.03 16 30 H 0.11 4.19 7.76 -2.39 -0.02 4.17 16 31 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 32 H 0.08 1.43 7.51 -2.39 -0.02 1.41 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.09 0.87 7.78 -2.38 -0.02 0.86 16 37 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 2.00 8.04 -2.39 -0.02 1.98 16 39 H 0.04 1.52 6.88 -2.39 -0.02 1.50 16 40 H 0.42 6.80 7.95 -92.71 -0.74 6.06 16 41 H 0.29 -1.29 8.06 -2.91 -0.02 -1.31 16 Total: -1.00 -102.78 366.70 -0.70 -103.48 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -1.50 Total: 9.42 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 7.86 Total: 16.09 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -7.89 Total: -118.15 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -0.11 Total: -50.56 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.05 Total: 52.28 kcal Atomic # 16 Polarization: -11.46 SS G_CDS: -1.11 Total: -12.56 kcal Total: -102.78 -0.70 -103.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296459712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.433 kcal (2) G-P(sol) polarization free energy of solvation -102.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds