Wall clock time and date at job start Tue Mar 31 2020 22:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00490 * 2 1 4 4 H 1.48495 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46944 * 299.99797 * 3 2 1 6 6 H 1.48500 * 109.46941 * 59.99610 * 3 2 1 7 7 C 1.38798 * 119.99322 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00095 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00269 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47222 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99740 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00229 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00246 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47567 * 180.02562 * 14 13 11 16 16 C 1.30997 * 120.00462 * 124.99370 * 15 14 13 17 17 C 1.50704 * 120.00001 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.46939 * 125.00298 * 17 16 15 19 19 C 1.34773 * 119.99722 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00442 * 0.02562 * 19 18 17 21 21 C 1.50705 * 119.99762 * 179.97438 * 19 18 17 22 22 N 1.46500 * 109.47081 * 180.02562 * 21 19 18 23 23 C 1.34429 * 126.81895 * 124.99841 * 22 21 19 24 24 N 1.30837 * 108.07952 * 180.02562 * 23 22 21 25 25 C 1.33246 * 109.82318 * 359.97438 * 24 23 22 26 26 N 1.30712 * 108.94935 * 0.27015 * 25 24 23 27 27 H 0.97001 * 119.99472 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46902 * 59.99937 * 10 9 7 29 29 H 1.08995 * 109.47044 * 300.00133 * 10 9 7 30 30 H 0.97004 * 119.99528 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47418 * 59.99886 * 14 13 11 32 32 H 1.09008 * 109.47220 * 300.00011 * 14 13 11 33 33 H 1.08003 * 119.99928 * 305.00069 * 15 14 13 34 34 H 1.08003 * 119.99610 * 0.02562 * 16 15 14 35 35 H 1.08993 * 109.47387 * 5.00294 * 17 16 15 36 36 H 1.09001 * 109.46619 * 244.99975 * 17 16 15 37 37 H 0.96997 * 120.00182 * 0.02562 * 18 17 16 38 38 H 1.09002 * 109.47196 * 60.00345 * 21 19 18 39 39 H 1.08995 * 109.47509 * 300.00521 * 21 19 18 40 40 H 1.08000 * 125.96340 * 359.97438 * 23 22 21 41 41 H 1.08002 * 125.52127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8918 2.3963 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7908 -5.5023 0.0011 13 7 2.8437 -6.3433 0.0018 14 6 2.3299 -7.7152 0.0019 15 6 3.4842 -8.6840 0.0032 16 6 3.5669 -9.6031 0.9330 17 6 4.7215 -10.5715 0.9346 18 7 5.3978 -10.5229 2.2333 19 6 6.4666 -11.3102 2.4663 20 8 6.8688 -12.0585 1.6009 21 6 7.1626 -11.2597 3.8021 22 7 8.2850 -12.2012 3.8037 23 6 9.5700 -11.9224 4.0832 24 7 10.2585 -13.0297 3.9752 25 6 9.4511 -14.0321 3.6307 26 7 8.2333 -13.5733 3.5084 27 1 -0.4849 0.8401 -0.0004 28 1 3.1242 -3.7315 0.8905 29 1 3.1242 -3.7315 -0.8894 30 1 3.8005 -6.1837 0.0022 31 1 1.7217 -7.8755 -0.8884 32 1 1.7208 -7.8750 0.8916 33 1 4.2434 -8.6205 -0.7623 34 1 2.8075 -9.6668 1.6983 35 1 5.4253 -10.2992 0.1481 36 1 4.3497 -11.5805 0.7562 37 1 5.0759 -9.9247 2.9256 38 1 6.4589 -11.5314 4.5890 39 1 7.5348 -10.2509 3.9800 40 1 9.9653 -10.9532 4.3494 41 1 9.7547 -15.0565 3.4729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298271425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:56 Heat of formation + Delta-G solvation = 42.823019 kcal Electronic energy + Delta-G solvation = -24124.212134 eV Core-core repulsion = 20168.371822 eV Total energy + Delta-G solvation = -3955.840313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.50778 -40.21214 -39.28185 -36.84319 -35.06452 -34.55371 -33.02197 -32.47314 -31.62306 -30.08456 -28.99335 -27.19695 -25.53662 -24.12471 -22.65295 -22.43051 -21.27695 -20.68961 -20.00117 -18.13284 -17.95560 -17.88947 -16.63440 -16.51216 -16.20754 -16.07899 -15.57591 -15.45282 -15.20984 -14.84748 -14.65592 -14.40533 -14.28446 -14.01307 -13.85791 -13.45911 -13.13978 -12.89374 -12.77623 -12.56099 -12.30344 -11.87279 -11.65511 -11.10899 -11.06769 -10.90522 -10.80409 -10.46397 -10.26361 -10.16838 -10.00217 -9.85413 -9.66190 -9.40636 -9.12408 -8.97768 -8.28813 -6.55407 -6.26427 -3.97359 1.11215 1.37572 1.69366 1.92741 2.56354 2.65784 3.00072 3.02629 3.18039 3.25433 3.30225 3.69674 3.80814 3.87945 4.00225 4.14505 4.15911 4.29160 4.41723 4.49657 4.76641 4.85218 4.98690 5.09040 5.11977 5.16293 5.33419 5.48655 5.67100 5.70085 5.73501 5.81883 5.98729 6.04730 6.06945 6.14236 6.23575 6.49867 6.79270 7.52574 7.55199 7.59776 7.63965 8.30732 8.51032 9.19179 10.81078 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018430 B = 0.001399 C = 0.001317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.897849 B =20007.128697 C =21249.411832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.737 5.737 14 C 0.146 3.854 15 C -0.137 4.137 16 C -0.168 4.168 17 C 0.152 3.848 18 N -0.724 5.724 19 C 0.499 3.501 20 O -0.509 6.509 21 C 0.112 3.888 22 N -0.373 5.373 23 C 0.256 3.744 24 N -0.544 5.544 25 C 0.194 3.806 26 N -0.291 5.291 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.405 0.595 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.220 0.780 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.353 -23.663 8.561 30.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.392 5.392 14 C 0.023 3.977 15 C -0.156 4.156 16 C -0.187 4.187 17 C 0.029 3.971 18 N -0.378 5.378 19 C 0.282 3.718 20 O -0.383 6.383 21 C -0.015 4.015 22 N -0.164 5.164 23 C -0.041 4.041 24 N -0.270 5.270 25 C -0.109 4.109 26 N -0.118 5.118 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.240 0.760 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.237 0.763 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 14.140 -24.887 7.759 29.656 hybrid contribution 2.163 1.914 0.294 2.903 sum 16.302 -22.973 8.053 29.298 Atomic orbital electron populations 1.70029 1.05963 1.27394 1.46859 1.24995 0.95026 0.99050 0.94486 0.86112 0.79563 0.81850 0.77940 1.19624 1.20535 1.20549 1.22905 0.94939 0.91611 1.58970 0.90857 1.85415 1.04870 0.96383 1.96725 1.23529 1.06633 0.95247 1.04970 1.20349 0.86505 0.86283 0.75092 1.90711 1.15367 1.85556 1.47398 1.45974 1.10063 1.05006 1.78151 1.20301 0.94105 0.80275 1.03035 1.23090 0.98787 0.95229 0.98511 1.22895 0.98683 0.96988 1.00164 1.20356 0.92361 0.99431 0.84916 1.45890 1.31204 1.43433 1.17233 1.20455 0.81050 0.80844 0.89409 1.90831 1.64107 1.37674 1.45652 1.21571 0.88919 0.93366 0.97642 1.49989 1.07756 1.07177 1.51502 1.26131 0.80909 1.00272 0.96744 1.70553 1.34037 0.98557 1.23891 1.26056 0.86559 1.00361 0.97915 1.78196 1.22674 0.88484 1.22415 0.92199 0.89197 0.89158 0.76704 0.90406 0.90980 0.86259 0.85991 0.90751 0.90270 0.76029 0.86109 0.84899 0.76331 0.76645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.95 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 11 C 0.53 9.27 7.85 -10.99 -0.09 9.19 16 12 O -0.52 -11.20 15.86 5.56 0.09 -11.11 16 13 N -0.74 -8.63 5.55 -61.47 -0.34 -8.97 16 14 C 0.15 1.42 6.11 -5.20 -0.03 1.39 16 15 C -0.14 -0.86 9.24 -36.03 -0.33 -1.20 16 16 C -0.17 -0.87 9.24 -36.02 -0.33 -1.20 16 17 C 0.15 0.85 6.11 -5.19 -0.03 0.82 16 18 N -0.72 -3.12 5.55 -61.47 -0.34 -3.46 16 19 C 0.50 3.33 7.87 -10.98 -0.09 3.24 16 20 O -0.51 -6.11 15.73 5.56 0.09 -6.03 16 21 C 0.11 0.36 7.03 -5.19 -0.04 0.32 16 22 N -0.37 -2.64 3.41 -63.81 -0.22 -2.86 16 23 C 0.26 1.56 12.63 -90.65 -1.14 0.41 16 24 N -0.54 -4.86 11.19 -15.83 -0.18 -5.03 16 25 C 0.19 1.71 13.03 -91.81 -1.20 0.51 16 26 N -0.29 -2.98 11.80 29.29 0.35 -2.63 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.40 3.49 8.46 -40.82 -0.35 3.15 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.74 7.79 -51.92 -0.40 0.33 16 33 H 0.12 0.66 7.84 -52.48 -0.41 0.25 16 34 H 0.12 0.56 7.84 -52.48 -0.41 0.15 16 35 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.41 0.58 8.46 -40.82 -0.35 0.23 16 38 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.13 -0.14 8.09 -51.93 -0.42 -0.56 16 40 H 0.22 0.24 8.06 -52.49 -0.42 -0.18 16 41 H 0.22 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -41.72 383.23 -9.39 -51.11 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.25 Total: -2.06 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.86 Total: -1.88 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.00 Total: -47.93 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.18 Total: -17.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -41.72 -9.39 -51.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298271425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.932 kcal (2) G-P(sol) polarization free energy of solvation -41.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds