Wall clock time and date at job start Tue Mar 31 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00490 * 2 1 4 4 H 1.48495 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46944 * 299.99797 * 3 2 1 6 6 H 1.48500 * 109.46941 * 59.99610 * 3 2 1 7 7 C 1.38798 * 119.99322 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00095 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00269 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47222 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99740 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00229 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00246 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47567 * 180.02562 * 14 13 11 16 16 C 1.30997 * 120.00462 * 124.99370 * 15 14 13 17 17 C 1.50704 * 120.00001 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.46939 * 125.00298 * 17 16 15 19 19 C 1.34773 * 119.99722 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00442 * 0.02562 * 19 18 17 21 21 C 1.50705 * 119.99762 * 179.97438 * 19 18 17 22 22 N 1.46500 * 109.47081 * 180.02562 * 21 19 18 23 23 C 1.34429 * 126.81895 * 124.99841 * 22 21 19 24 24 N 1.30837 * 108.07952 * 180.02562 * 23 22 21 25 25 C 1.33246 * 109.82318 * 359.97438 * 24 23 22 26 26 N 1.30712 * 108.94935 * 0.27015 * 25 24 23 27 27 H 0.97001 * 119.99472 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46902 * 59.99937 * 10 9 7 29 29 H 1.08995 * 109.47044 * 300.00133 * 10 9 7 30 30 H 0.97004 * 119.99528 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47418 * 59.99886 * 14 13 11 32 32 H 1.09008 * 109.47220 * 300.00011 * 14 13 11 33 33 H 1.08003 * 119.99928 * 305.00069 * 15 14 13 34 34 H 1.08003 * 119.99610 * 0.02562 * 16 15 14 35 35 H 1.08993 * 109.47387 * 5.00294 * 17 16 15 36 36 H 1.09001 * 109.46619 * 244.99975 * 17 16 15 37 37 H 0.96997 * 120.00182 * 0.02562 * 18 17 16 38 38 H 1.09002 * 109.47196 * 60.00345 * 21 19 18 39 39 H 1.08995 * 109.47509 * 300.00521 * 21 19 18 40 40 H 1.08000 * 125.96340 * 359.97438 * 23 22 21 41 41 H 1.08002 * 125.52127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8918 2.3963 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7908 -5.5023 0.0011 13 7 2.8437 -6.3433 0.0018 14 6 2.3299 -7.7152 0.0019 15 6 3.4842 -8.6840 0.0032 16 6 3.5669 -9.6031 0.9330 17 6 4.7215 -10.5715 0.9346 18 7 5.3978 -10.5229 2.2333 19 6 6.4666 -11.3102 2.4663 20 8 6.8688 -12.0585 1.6009 21 6 7.1626 -11.2597 3.8021 22 7 8.2850 -12.2012 3.8037 23 6 9.5700 -11.9224 4.0832 24 7 10.2585 -13.0297 3.9752 25 6 9.4511 -14.0321 3.6307 26 7 8.2333 -13.5733 3.5084 27 1 -0.4849 0.8401 -0.0004 28 1 3.1242 -3.7315 0.8905 29 1 3.1242 -3.7315 -0.8894 30 1 3.8005 -6.1837 0.0022 31 1 1.7217 -7.8755 -0.8884 32 1 1.7208 -7.8750 0.8916 33 1 4.2434 -8.6205 -0.7623 34 1 2.8075 -9.6668 1.6983 35 1 5.4253 -10.2992 0.1481 36 1 4.3497 -11.5805 0.7562 37 1 5.0759 -9.9247 2.9256 38 1 6.4589 -11.5314 4.5890 39 1 7.5348 -10.2509 3.9800 40 1 9.9653 -10.9532 4.3494 41 1 9.7547 -15.0565 3.4729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298271425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:55 Heat of formation + Delta-G solvation = 11.165294 kcal Electronic energy + Delta-G solvation = -24125.584916 eV Core-core repulsion = 20168.371822 eV Total energy + Delta-G solvation = -3957.213095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.99462 -40.75235 -40.57225 -37.52356 -35.91394 -35.00672 -34.57497 -33.84073 -32.16014 -31.25027 -29.69119 -27.97858 -27.55260 -24.83502 -23.17659 -22.89107 -21.88927 -21.70370 -20.72505 -19.77555 -18.58976 -18.33162 -17.82208 -17.37685 -16.98074 -16.87107 -16.69259 -16.58569 -16.19918 -15.80857 -15.70158 -15.22554 -15.05719 -14.92905 -14.60775 -14.45414 -14.40858 -13.83875 -13.72147 -13.31514 -13.18392 -13.14704 -12.90312 -12.77043 -12.59147 -12.21803 -11.70023 -11.45913 -11.15037 -11.09694 -11.01524 -10.79062 -10.64934 -10.46272 -10.25561 -10.17893 -9.95530 -8.65504 -8.34038 -6.11795 0.64416 0.85279 1.30259 1.35250 1.42363 1.47842 1.50455 1.60858 1.62289 2.03016 2.25066 2.27969 2.43901 3.00609 3.34170 3.53332 3.55459 3.56875 3.74395 3.99968 4.01687 4.09712 4.17181 4.28269 4.33392 4.41352 4.53051 4.54045 4.55046 4.67682 4.83803 5.24778 5.25549 5.36657 5.43398 5.46692 5.56193 5.67870 5.87566 6.21025 6.44949 6.51960 7.07840 7.11270 7.15628 7.25316 8.75392 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018430 B = 0.001399 C = 0.001317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.897849 B =20007.128697 C =21249.411832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.709 5.709 14 C 0.147 3.853 15 C -0.140 4.140 16 C -0.143 4.143 17 C 0.154 3.846 18 N -0.708 5.708 19 C 0.496 3.504 20 O -0.571 6.571 21 C 0.109 3.891 22 N -0.378 5.378 23 C 0.264 3.736 24 N -0.580 5.580 25 C 0.184 3.816 26 N -0.337 5.337 27 H 0.271 0.729 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.418 0.582 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.422 0.578 38 H 0.145 0.855 39 H 0.184 0.816 40 H 0.267 0.733 41 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.728 -22.834 9.744 31.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.363 5.363 14 C 0.024 3.976 15 C -0.160 4.160 16 C -0.162 4.162 17 C 0.030 3.970 18 N -0.363 5.363 19 C 0.281 3.719 20 O -0.449 6.449 21 C -0.015 4.015 22 N -0.169 5.169 23 C -0.032 4.032 24 N -0.307 5.307 25 C -0.119 4.119 26 N -0.164 5.164 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.255 0.745 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.260 0.740 38 H 0.163 0.837 39 H 0.201 0.799 40 H 0.283 0.717 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 16.538 -24.057 8.971 30.541 hybrid contribution 1.447 1.536 -0.053 2.111 sum 17.985 -22.521 8.918 30.169 Atomic orbital electron populations 1.70193 1.07990 1.28519 1.48128 1.26112 0.95927 1.03289 0.93760 0.84913 0.78670 0.76401 0.78013 1.17937 1.20110 1.19965 1.23246 0.95383 0.91987 1.58693 0.89810 1.85599 1.10700 0.99323 1.97055 1.23374 1.03490 0.94273 1.06927 1.20074 0.86210 0.86710 0.75114 1.90701 1.17503 1.86098 1.50210 1.45706 1.10390 1.04716 1.75513 1.20372 0.95376 0.79453 1.02423 1.22837 0.98188 0.95215 0.99716 1.22874 0.98136 0.95624 0.99546 1.20232 0.92361 0.98821 0.85549 1.45757 1.30344 1.43014 1.17135 1.21098 0.80957 0.79786 0.90057 1.90815 1.65924 1.40260 1.47859 1.22019 0.88608 0.95109 0.95799 1.50173 1.09067 1.06514 1.51128 1.27035 0.80353 1.01161 0.94667 1.70539 1.35196 0.99591 1.25414 1.26466 0.86472 1.01368 0.97592 1.78091 1.23639 0.90735 1.23968 0.92029 0.86942 0.87226 0.74511 0.91593 0.91288 0.85066 0.84949 0.91427 0.91394 0.73979 0.83736 0.79855 0.71708 0.75137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.02 13.22 21.65 0.29 -54.74 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 42.45 29.55 68.60 2.03 44.48 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -30.26 9.50 67.95 0.65 -29.62 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 9 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 10 C -0.13 -4.77 6.16 71.24 0.44 -4.34 16 11 C 0.53 18.04 7.85 87.66 0.69 18.73 16 12 O -0.57 -24.88 15.86 -3.02 -0.05 -24.92 16 13 N -0.71 -14.97 5.55 -466.80 -2.59 -17.56 16 14 C 0.15 2.59 6.11 85.63 0.52 3.11 16 15 C -0.14 -1.40 9.24 25.65 0.24 -1.17 16 16 C -0.14 -1.08 9.24 25.65 0.24 -0.85 16 17 C 0.15 1.44 6.11 85.63 0.52 1.96 16 18 N -0.71 -4.26 5.55 -466.79 -2.59 -6.85 16 19 C 0.50 5.68 7.87 87.66 0.69 6.37 16 20 O -0.57 -13.61 15.73 -3.03 -0.05 -13.66 16 21 C 0.11 0.35 7.03 85.63 0.60 0.95 16 22 N -0.38 -4.66 3.41 -355.80 -1.21 -5.87 16 23 C 0.26 2.61 12.63 180.36 2.28 4.89 16 24 N -0.58 -9.94 11.19 -203.99 -2.28 -12.22 16 25 C 0.18 3.29 13.03 180.76 2.36 5.65 16 26 N -0.34 -6.89 11.80 -61.24 -0.72 -7.61 16 27 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 29 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 30 H 0.42 5.86 8.46 -92.71 -0.78 5.07 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.30 7.79 -2.38 -0.02 1.28 16 33 H 0.13 1.07 7.84 -2.91 -0.02 1.05 16 34 H 0.13 0.80 7.84 -2.91 -0.02 0.78 16 35 H 0.07 0.77 7.79 -2.39 -0.02 0.75 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.42 -0.38 8.46 -92.71 -0.78 -1.17 16 38 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.18 -1.36 8.09 -2.39 -0.02 -1.38 16 40 H 0.27 -0.52 8.06 -2.91 -0.02 -0.54 16 41 H 0.23 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -96.71 383.23 0.85 -95.86 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -0.49 Total: 5.61 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 9.68 Total: 6.93 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -9.11 Total: -104.85 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.10 Total: -38.58 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -96.71 0.85 -95.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298271425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.027 kcal (2) G-P(sol) polarization free energy of solvation -96.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds