Wall clock time and date at job start Tue Mar 31 2020 22:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86796 * 120.00167 * 2 1 4 4 H 1.48496 * 109.47465 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46908 * 299.99673 * 3 2 1 6 6 H 1.48498 * 109.47387 * 59.99412 * 3 2 1 7 7 C 1.38799 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99765 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00098 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99876 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47109 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00055 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00172 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99925 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46758 * 180.02562 * 14 13 11 16 16 C 1.30993 * 120.00033 * 127.00514 * 15 14 13 17 17 C 1.50701 * 120.00239 * 7.55330 * 16 15 14 18 18 N 1.46505 * 109.47208 * 127.15517 * 17 16 15 19 19 C 1.34777 * 119.99844 * 180.02562 * 18 17 16 20 20 O 1.21272 * 120.00267 * 0.02562 * 19 18 17 21 21 C 1.50707 * 119.99431 * 180.02562 * 19 18 17 22 22 N 1.46495 * 109.46523 * 180.02562 * 21 19 18 23 23 C 1.34438 * 126.82108 * 125.00097 * 22 21 19 24 24 N 1.30831 * 108.07726 * 179.97438 * 23 22 21 25 25 C 1.33238 * 109.83032 * 0.02562 * 24 23 22 26 26 N 1.30717 * 108.94679 * 359.75294 * 25 24 23 27 27 H 0.96996 * 119.99204 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47478 * 59.99791 * 10 9 7 29 29 H 1.09001 * 109.47238 * 299.99359 * 10 9 7 30 30 H 0.96995 * 119.99562 * 0.02562 * 13 11 10 31 31 H 1.08995 * 109.47342 * 59.99712 * 14 13 11 32 32 H 1.09001 * 109.46574 * 299.99770 * 14 13 11 33 33 H 1.08005 * 120.00025 * 306.99670 * 15 14 13 34 34 H 1.08003 * 120.00438 * 187.55312 * 16 15 14 35 35 H 1.09001 * 109.47160 * 7.16138 * 17 16 15 36 36 H 1.08994 * 109.47394 * 247.15878 * 17 16 15 37 37 H 0.97003 * 119.99896 * 0.02562 * 18 17 16 38 38 H 1.08994 * 109.47394 * 300.00286 * 21 19 18 39 39 H 1.09002 * 109.46849 * 60.00886 * 21 19 18 40 40 H 1.07994 * 125.96204 * 359.97438 * 23 22 21 41 41 H 1.08003 * 125.52904 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8441 -6.3432 0.0008 14 6 2.3303 -7.7151 0.0008 15 6 3.4848 -8.6838 0.0009 16 6 3.5476 -9.6278 0.9069 17 6 2.3870 -9.8539 1.8414 18 7 1.9920 -11.2639 1.7972 19 6 0.9678 -11.7009 2.5565 20 8 0.3730 -10.9268 3.2761 21 6 0.5618 -13.1516 2.5114 22 7 -0.5671 -13.3710 3.4188 23 6 -1.7579 -13.9116 3.1072 24 7 -2.4899 -13.9336 4.1914 25 6 -1.8041 -13.4174 5.2104 26 7 -0.6189 -13.0630 4.7881 27 1 -0.4849 0.8401 -0.0004 28 1 3.1245 -3.7314 0.8904 29 1 3.1244 -3.7314 -0.8895 30 1 3.8008 -6.1835 0.0004 31 1 1.7213 -7.8751 -0.8889 32 1 1.7221 -7.8752 0.8911 33 1 4.2603 -8.5998 -0.7461 34 1 4.4311 -10.2442 0.9843 35 1 1.5466 -9.2314 1.5342 36 1 2.6819 -9.5908 2.8572 37 1 2.4675 -11.8830 1.2213 38 1 0.2677 -13.4152 1.4956 39 1 1.4022 -13.7737 2.8194 40 1 -2.0580 -14.2659 2.1322 41 1 -2.1671 -13.3124 6.2222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298271426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:58 Heat of formation + Delta-G solvation = 52.106654 kcal Electronic energy + Delta-G solvation = -24602.147600 eV Core-core repulsion = 20646.709856 eV Total energy + Delta-G solvation = -3955.437744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.41249 -40.15001 -39.25850 -37.02805 -34.84082 -34.46284 -32.97121 -32.43172 -31.52726 -29.77951 -28.96262 -26.69722 -25.56366 -25.08452 -22.69688 -22.33835 -21.09586 -20.49622 -19.55977 -18.05111 -17.87861 -17.54356 -16.97714 -16.45802 -16.18482 -15.89515 -15.51810 -15.33203 -15.06698 -14.81135 -14.71727 -14.51426 -14.05108 -13.92670 -13.81555 -13.54005 -13.11452 -13.03254 -12.66530 -12.52518 -12.20816 -11.86760 -11.29483 -11.07386 -11.02596 -10.79549 -10.76513 -10.36898 -10.16856 -10.07168 -9.89730 -9.81417 -9.56151 -9.37428 -9.08137 -8.86493 -8.23882 -6.50729 -6.22200 -3.92922 1.18769 1.39941 1.77649 2.04414 2.65606 2.73245 3.05650 3.07672 3.21316 3.28644 3.33934 3.75768 3.88273 3.96363 4.07262 4.19601 4.22402 4.33292 4.45736 4.51402 4.77623 4.85869 5.09776 5.13020 5.14584 5.34593 5.43357 5.48865 5.70536 5.81428 5.83260 5.87023 5.99944 6.08424 6.11749 6.19044 6.32910 6.54383 6.88731 7.59283 7.64399 7.64982 7.73634 8.34896 8.56439 9.23174 10.85312 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.001609 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.469086 B =17394.569470 C =18541.171438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.735 5.735 14 C 0.133 3.867 15 C -0.138 4.138 16 C -0.165 4.165 17 C 0.135 3.865 18 N -0.723 5.723 19 C 0.496 3.504 20 O -0.502 6.502 21 C 0.114 3.886 22 N -0.373 5.373 23 C 0.256 3.744 24 N -0.543 5.543 25 C 0.195 3.805 26 N -0.291 5.291 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.402 0.598 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.220 0.780 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.713 -32.154 0.862 33.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.389 6.389 13 N -0.391 5.391 14 C 0.010 3.990 15 C -0.158 4.158 16 C -0.184 4.184 17 C 0.012 3.988 18 N -0.377 5.377 19 C 0.279 3.721 20 O -0.375 6.375 21 C -0.013 4.013 22 N -0.165 5.165 23 C -0.041 4.041 24 N -0.270 5.270 25 C -0.108 4.108 26 N -0.117 5.117 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.236 0.764 38 H 0.150 0.850 39 H 0.137 0.863 40 H 0.236 0.764 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.348 -31.583 1.854 32.268 hybrid contribution 2.868 1.030 -0.646 3.115 sum 9.215 -30.552 1.208 31.935 Atomic orbital electron populations 1.70033 1.05956 1.27366 1.46881 1.25004 0.95037 0.99063 0.94535 0.86105 0.79550 0.81852 0.77909 1.19628 1.20561 1.20555 1.22908 0.94943 0.91624 1.58904 0.90851 1.85435 1.04864 0.96361 1.96715 1.23527 1.06630 0.95206 1.04982 1.20357 0.86510 0.86285 0.75114 1.90716 1.15372 1.85535 1.47321 1.45935 1.10060 1.04874 1.78183 1.20493 0.94648 0.80632 1.03256 1.23055 0.99180 0.96195 0.97343 1.22821 0.98466 1.00936 0.96223 1.20602 0.96530 0.81609 1.00021 1.45822 1.34845 1.11176 1.45877 1.20466 0.80857 0.89977 0.80806 1.90868 1.52399 1.56086 1.38113 1.21538 0.89730 0.95837 0.94211 1.49980 1.12743 1.46260 1.07527 1.26111 0.82250 0.95375 1.00364 1.70541 1.32692 1.24924 0.98812 1.26059 0.88443 0.96102 1.00169 1.78200 1.22038 1.22449 0.89032 0.92216 0.89150 0.89153 0.76683 0.90621 0.90276 0.85720 0.85853 0.89442 0.90283 0.76384 0.85022 0.86271 0.76374 0.76612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.84 7.85 -10.98 -0.09 9.75 16 12 O -0.52 -11.80 15.86 5.56 0.09 -11.71 16 13 N -0.74 -9.35 5.55 -61.47 -0.34 -9.69 16 14 C 0.13 1.42 5.76 -5.19 -0.03 1.40 16 15 C -0.14 -0.89 9.63 -36.02 -0.35 -1.24 16 16 C -0.17 -0.87 9.63 -36.02 -0.35 -1.22 16 17 C 0.13 1.02 5.76 -5.19 -0.03 0.99 16 18 N -0.72 -3.83 5.55 -61.47 -0.34 -4.17 16 19 C 0.50 3.99 7.87 -10.98 -0.09 3.91 16 20 O -0.50 -7.14 15.75 5.56 0.09 -7.05 16 21 C 0.11 0.45 7.03 -5.19 -0.04 0.41 16 22 N -0.37 -3.04 3.40 -63.81 -0.22 -3.26 16 23 C 0.26 1.82 12.63 -90.65 -1.14 0.67 16 24 N -0.54 -5.49 11.19 -15.83 -0.18 -5.67 16 25 C 0.20 1.98 13.03 -91.81 -1.20 0.78 16 26 N -0.29 -3.34 11.83 29.29 0.35 -3.00 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 30 H 0.40 3.81 8.46 -40.82 -0.35 3.46 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.97 5.29 -51.93 -0.27 0.69 16 33 H 0.12 0.60 8.06 -52.48 -0.42 0.17 16 34 H 0.12 0.38 8.06 -52.48 -0.42 -0.04 16 35 H 0.09 0.88 5.30 -51.93 -0.28 0.60 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 0.55 8.46 -40.82 -0.35 0.21 16 38 H 0.13 -0.08 8.09 -51.93 -0.42 -0.50 16 39 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.22 0.42 8.06 -52.49 -0.42 0.00 16 41 H 0.22 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -43.40 378.78 -9.24 -52.64 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.01 Total: -0.40 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.88 Total: -0.40 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.00 Total: -51.36 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.18 Total: -18.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -43.40 -9.24 -52.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298271426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.745 kcal (2) G-P(sol) polarization free energy of solvation -43.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds