Wall clock time and date at job start Tue Mar 31 2020 22:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86796 * 120.00167 * 2 1 4 4 H 1.48496 * 109.47465 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46908 * 299.99673 * 3 2 1 6 6 H 1.48498 * 109.47387 * 59.99412 * 3 2 1 7 7 C 1.38799 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99765 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00098 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99876 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47109 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00055 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00172 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99925 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46758 * 180.02562 * 14 13 11 16 16 C 1.30993 * 120.00033 * 127.00514 * 15 14 13 17 17 C 1.50701 * 120.00239 * 7.55330 * 16 15 14 18 18 N 1.46505 * 109.47208 * 127.15517 * 17 16 15 19 19 C 1.34777 * 119.99844 * 180.02562 * 18 17 16 20 20 O 1.21272 * 120.00267 * 0.02562 * 19 18 17 21 21 C 1.50707 * 119.99431 * 180.02562 * 19 18 17 22 22 N 1.46495 * 109.46523 * 180.02562 * 21 19 18 23 23 C 1.34438 * 126.82108 * 125.00097 * 22 21 19 24 24 N 1.30831 * 108.07726 * 179.97438 * 23 22 21 25 25 C 1.33238 * 109.83032 * 0.02562 * 24 23 22 26 26 N 1.30717 * 108.94679 * 359.75294 * 25 24 23 27 27 H 0.96996 * 119.99204 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47478 * 59.99791 * 10 9 7 29 29 H 1.09001 * 109.47238 * 299.99359 * 10 9 7 30 30 H 0.96995 * 119.99562 * 0.02562 * 13 11 10 31 31 H 1.08995 * 109.47342 * 59.99712 * 14 13 11 32 32 H 1.09001 * 109.46574 * 299.99770 * 14 13 11 33 33 H 1.08005 * 120.00025 * 306.99670 * 15 14 13 34 34 H 1.08003 * 120.00438 * 187.55312 * 16 15 14 35 35 H 1.09001 * 109.47160 * 7.16138 * 17 16 15 36 36 H 1.08994 * 109.47394 * 247.15878 * 17 16 15 37 37 H 0.97003 * 119.99896 * 0.02562 * 18 17 16 38 38 H 1.08994 * 109.47394 * 300.00286 * 21 19 18 39 39 H 1.09002 * 109.46849 * 60.00886 * 21 19 18 40 40 H 1.07994 * 125.96204 * 359.97438 * 23 22 21 41 41 H 1.08003 * 125.52904 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8441 -6.3432 0.0008 14 6 2.3303 -7.7151 0.0008 15 6 3.4848 -8.6838 0.0009 16 6 3.5476 -9.6278 0.9069 17 6 2.3870 -9.8539 1.8414 18 7 1.9920 -11.2639 1.7972 19 6 0.9678 -11.7009 2.5565 20 8 0.3730 -10.9268 3.2761 21 6 0.5618 -13.1516 2.5114 22 7 -0.5671 -13.3710 3.4188 23 6 -1.7579 -13.9116 3.1072 24 7 -2.4899 -13.9336 4.1914 25 6 -1.8041 -13.4174 5.2104 26 7 -0.6189 -13.0630 4.7881 27 1 -0.4849 0.8401 -0.0004 28 1 3.1245 -3.7314 0.8904 29 1 3.1244 -3.7314 -0.8895 30 1 3.8008 -6.1835 0.0004 31 1 1.7213 -7.8751 -0.8889 32 1 1.7221 -7.8752 0.8911 33 1 4.2603 -8.5998 -0.7461 34 1 4.4311 -10.2442 0.9843 35 1 1.5466 -9.2314 1.5342 36 1 2.6819 -9.5908 2.8572 37 1 2.4675 -11.8830 1.2213 38 1 0.2677 -13.4152 1.4956 39 1 1.4022 -13.7737 2.8194 40 1 -2.0580 -14.2659 2.1322 41 1 -2.1671 -13.3124 6.2222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298271426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:58 Heat of formation + Delta-G solvation = 17.869325 kcal Electronic energy + Delta-G solvation = -24603.632242 eV Core-core repulsion = 20646.709856 eV Total energy + Delta-G solvation = -3956.922386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.00454 -40.86295 -40.58652 -37.82011 -35.79268 -35.02417 -34.59961 -33.88243 -32.17158 -31.13867 -29.63085 -27.80668 -27.33441 -25.94868 -23.31767 -22.90735 -21.91059 -21.65967 -20.35951 -19.67531 -18.50417 -18.33012 -17.86339 -17.58485 -16.96504 -16.89669 -16.76753 -16.55639 -16.28157 -15.85638 -15.69881 -15.42903 -15.08253 -14.85980 -14.58512 -14.53939 -14.37736 -14.20068 -13.72773 -13.47290 -13.18785 -13.16862 -12.92083 -12.77639 -12.60467 -11.96453 -11.71805 -11.47347 -11.17265 -11.11580 -11.02944 -10.79606 -10.62708 -10.44630 -10.32648 -10.28676 -9.84955 -8.69093 -8.36177 -6.14802 0.63057 0.83987 1.27647 1.35199 1.40850 1.47074 1.48134 1.57161 1.58826 2.01540 2.20473 2.25911 2.44093 2.98180 3.31410 3.52640 3.54763 3.61310 3.74080 3.91714 4.01204 4.07622 4.09971 4.15226 4.27773 4.36924 4.41700 4.48968 4.63868 4.68168 4.93464 5.24196 5.24534 5.34335 5.40800 5.44938 5.46506 5.70741 5.87383 6.18726 6.45948 6.48333 7.05117 7.10960 7.17317 7.21491 8.73434 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.001609 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.469086 B =17394.569470 C =18541.171438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.128 4.128 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.707 5.707 14 C 0.129 3.871 15 C -0.141 4.141 16 C -0.138 4.138 17 C 0.131 3.869 18 N -0.702 5.702 19 C 0.489 3.511 20 O -0.575 6.575 21 C 0.113 3.887 22 N -0.379 5.379 23 C 0.264 3.736 24 N -0.580 5.580 25 C 0.183 3.817 26 N -0.338 5.338 27 H 0.271 0.729 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.419 0.581 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.425 0.575 38 H 0.187 0.813 39 H 0.151 0.849 40 H 0.269 0.731 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.333 -34.015 -0.824 36.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.070 5.930 10 C -0.279 4.279 11 C 0.317 3.683 12 O -0.448 6.448 13 N -0.361 5.361 14 C 0.006 3.994 15 C -0.160 4.160 16 C -0.156 4.156 17 C 0.007 3.993 18 N -0.357 5.357 19 C 0.275 3.725 20 O -0.453 6.453 21 C -0.011 4.011 22 N -0.170 5.170 23 C -0.032 4.032 24 N -0.307 5.307 25 C -0.120 4.120 26 N -0.165 5.165 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.257 0.743 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.264 0.736 38 H 0.204 0.796 39 H 0.168 0.832 40 H 0.285 0.715 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 10.083 -33.516 0.117 34.999 hybrid contribution 1.792 1.449 -0.146 2.309 sum 11.875 -32.066 -0.028 34.194 Atomic orbital electron populations 1.70204 1.08056 1.28561 1.48082 1.26172 0.95983 1.03452 0.93724 0.84870 0.78639 0.76161 0.78050 1.17851 1.19852 1.20066 1.23245 0.95397 0.91858 1.58776 0.89714 1.85649 1.10815 0.99501 1.97065 1.23365 1.03476 0.94086 1.07001 1.20149 0.86223 0.86872 0.75100 1.90703 1.17671 1.86148 1.50254 1.45665 1.10430 1.04605 1.75448 1.20595 0.96577 0.80238 1.01958 1.22938 0.98311 0.95635 0.99091 1.22939 0.98138 1.00575 0.93995 1.20463 0.96610 0.82575 0.99655 1.45627 1.34104 1.10626 1.45313 1.21304 0.80269 0.91380 0.79582 1.90848 1.54910 1.58322 1.41255 1.22033 0.89964 0.92876 0.96275 1.50183 1.14096 1.45939 1.06775 1.27058 0.81305 0.93556 1.01297 1.70520 1.34039 1.26364 0.99820 1.26450 0.88437 0.95923 1.01172 1.78086 1.23017 1.23924 0.91476 0.92008 0.87175 0.86762 0.74316 0.91643 0.92276 0.82661 0.81972 0.92568 0.92174 0.73576 0.79601 0.83151 0.71515 0.75249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.79 13.22 21.65 0.29 -56.50 16 2 C 0.01 0.64 5.49 84.86 0.47 1.11 16 3 Si 1.00 43.87 29.55 68.60 2.03 45.89 16 4 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -31.34 9.50 67.95 0.65 -30.70 16 8 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 9 S -0.16 -8.88 20.57 -56.49 -1.16 -10.04 16 10 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 11 C 0.53 19.72 7.85 87.66 0.69 20.40 16 12 O -0.57 -27.19 15.86 -3.03 -0.05 -27.24 16 13 N -0.71 -17.01 5.55 -466.79 -2.59 -19.60 16 14 C 0.13 2.67 5.76 85.63 0.49 3.17 16 15 C -0.14 -1.35 9.63 25.65 0.25 -1.11 16 16 C -0.14 -0.98 9.63 25.65 0.25 -0.73 16 17 C 0.13 1.88 5.76 85.63 0.49 2.37 16 18 N -0.70 -6.03 5.55 -466.78 -2.59 -8.62 16 19 C 0.49 7.44 7.87 87.66 0.69 8.13 16 20 O -0.58 -17.24 15.75 -3.01 -0.05 -17.29 16 21 C 0.11 0.56 7.03 85.64 0.60 1.16 16 22 N -0.38 -5.69 3.40 -355.81 -1.21 -6.90 16 23 C 0.26 3.30 12.63 180.36 2.28 5.58 16 24 N -0.58 -11.70 11.19 -204.00 -2.28 -13.98 16 25 C 0.18 3.91 13.03 180.76 2.36 6.27 16 26 N -0.34 -8.02 11.83 -61.24 -0.72 -8.75 16 27 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 29 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 30 H 0.42 6.75 8.46 -92.71 -0.78 5.96 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.51 5.29 -2.39 -0.01 1.50 16 33 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 34 H 0.16 0.07 8.06 -2.91 -0.02 0.05 16 35 H 0.06 1.20 5.30 -2.39 -0.01 1.19 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.43 -0.50 8.46 -92.71 -0.78 -1.28 16 38 H 0.19 -1.18 8.09 -2.39 -0.02 -1.20 16 39 H 0.15 -0.16 8.14 -2.39 -0.02 -0.17 16 40 H 0.27 0.03 8.06 -2.91 -0.02 0.01 16 41 H 0.23 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -104.43 378.78 0.82 -103.61 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -0.48 Total: 8.40 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 9.64 Total: 11.02 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -9.11 Total: -114.36 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.10 Total: -44.53 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -104.43 0.82 -103.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298271426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.479 kcal (2) G-P(sol) polarization free energy of solvation -104.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds