Wall clock time and date at job start Tue Mar 31 2020 22:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47337 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47347 * 300.00655 * 3 2 1 6 6 H 1.48510 * 109.46903 * 60.00320 * 3 2 1 7 7 C 1.38953 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99888 * 179.97438 * 7 2 1 9 9 N 1.37087 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00406 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99584 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00319 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47200 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21588 * 120.00555 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99704 * 180.02562 * 14 13 12 17 17 C 1.48149 * 127.83370 * 180.02562 * 16 14 13 18 18 C 1.54390 * 104.61736 * 140.41444 * 17 16 14 19 19 H 1.09000 * 110.43497 * 142.77592 * 18 17 16 20 20 C 1.52996 * 110.34338 * 264.99294 * 18 17 16 21 21 O 1.42902 * 109.46807 * 290.53693 * 20 18 17 22 22 C 1.54288 * 104.95880 * 23.86501 * 18 17 16 23 23 H 1.09000 * 110.34078 * 241.02289 * 22 18 17 24 24 C 1.52997 * 110.34579 * 118.87210 * 22 18 17 25 25 F 1.39905 * 109.47157 * 59.99589 * 24 22 18 26 26 F 1.39900 * 109.47010 * 299.99980 * 24 22 18 27 27 F 1.39897 * 109.47422 * 179.97438 * 24 22 18 28 28 C 1.48141 * 127.84112 * 359.97438 * 16 14 13 29 29 H 0.96999 * 120.00248 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99849 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.47340 * 59.99980 * 12 10 9 32 32 H 1.08995 * 109.47269 * 300.00130 * 12 10 9 33 33 H 0.97000 * 119.99725 * 0.02562 * 13 12 10 34 34 H 1.08994 * 110.41120 * 21.62595 * 17 16 14 35 35 H 1.09006 * 110.40157 * 259.19389 * 17 16 14 36 36 H 1.08996 * 109.47136 * 50.53508 * 20 18 17 37 37 H 1.08994 * 109.47031 * 170.53630 * 20 18 17 38 38 H 0.96699 * 113.99755 * 179.97438 * 21 20 18 39 39 H 1.08997 * 110.40564 * 100.79809 * 28 16 14 40 40 H 1.09005 * 110.40719 * 338.37093 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2123 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9764 -0.0016 14 6 1.7466 -7.2471 -0.0017 15 8 0.5512 -7.4694 -0.0018 16 7 2.6224 -8.2715 -0.0016 17 6 2.3236 -9.7226 -0.0022 18 6 3.3731 -10.3361 -0.9539 19 1 3.7036 -11.3058 -0.5817 20 6 2.7949 -10.4772 -2.3633 21 8 1.7899 -11.4931 -2.3663 22 6 4.5458 -9.3335 -0.9531 23 1 4.7111 -8.9430 -1.9572 24 6 5.8175 -10.0027 -0.4278 25 9 6.1458 -11.0882 -1.2470 26 9 5.6016 -10.4532 0.8790 27 9 6.8680 -9.0788 -0.4354 28 6 4.1022 -8.2020 -0.0020 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6175 -4.9205 -0.8914 32 1 0.6168 -4.9209 0.8885 33 1 3.1495 -5.7991 -0.0012 34 1 1.3171 -9.9032 -0.3791 35 1 2.4342 -10.1337 1.0013 36 1 2.3542 -9.5293 -2.6718 37 1 3.5903 -10.7509 -3.0565 38 1 1.3786 -11.6369 -3.2296 39 1 4.4911 -8.3751 1.0014 40 1 4.4372 -7.2356 -0.3789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312661709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:52 Heat of formation + Delta-G solvation = -261.684175 kcal Electronic energy + Delta-G solvation = -30014.339830 eV Core-core repulsion = 25028.392733 eV Total energy + Delta-G solvation = -4985.947098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.49782 -47.97207 -47.95019 -40.50095 -38.81881 -37.97306 -36.61167 -34.49963 -33.73863 -32.67621 -31.40178 -30.49155 -27.95356 -26.22125 -25.80971 -24.31706 -22.90365 -20.89010 -20.10979 -19.68732 -18.90624 -18.66341 -18.56168 -18.11895 -17.75572 -17.38685 -16.19457 -15.90163 -15.55019 -15.30857 -15.19253 -14.85575 -14.72911 -14.56590 -14.42639 -14.33506 -14.29387 -14.09975 -14.08318 -13.80066 -13.54807 -13.38774 -13.00049 -12.46193 -12.34911 -12.21031 -12.07946 -11.94038 -11.75187 -11.65706 -11.21883 -11.16324 -10.43083 -10.39066 -10.35531 -10.15708 -9.67554 -9.12841 -8.66768 -8.65644 -8.13029 -6.54148 -3.96209 2.18202 2.52572 3.08091 3.16932 3.20877 3.22505 3.27185 3.31275 3.52600 3.71363 3.88746 3.98347 4.12924 4.18935 4.22040 4.41037 4.60212 4.80128 4.83488 4.87621 5.07624 5.12914 5.14603 5.26414 5.38028 5.46262 5.62568 5.82835 5.94460 5.95134 6.05235 6.65130 7.00393 7.22177 7.43708 7.89562 8.03231 8.41825 8.64991 9.01953 9.36370 9.83896 10.62754 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.002439 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.961244 B =11476.268989 C =12539.051116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.721 5.721 14 C 0.731 3.269 15 O -0.586 6.586 16 N -0.641 5.641 17 C 0.133 3.867 18 C -0.096 4.096 19 H 0.105 0.895 20 C 0.086 3.914 21 O -0.569 6.569 22 C -0.149 4.149 23 H 0.130 0.870 24 C 0.463 3.537 25 F -0.180 7.180 26 F -0.177 7.177 27 F -0.177 7.177 28 C 0.108 3.892 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.406 0.594 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.384 0.616 39 H 0.087 0.913 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 -21.874 -3.850 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.379 5.379 14 C 0.433 3.567 15 O -0.464 6.464 16 N -0.380 5.380 17 C 0.010 3.990 18 C -0.116 4.116 19 H 0.123 0.877 20 C 0.008 3.992 21 O -0.375 6.375 22 C -0.170 4.170 23 H 0.148 0.852 24 C 0.408 3.592 25 F -0.162 7.162 26 F -0.159 7.159 27 F -0.158 7.158 28 C -0.016 4.016 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.244 0.756 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.232 0.768 39 H 0.105 0.895 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.326 -21.746 -3.196 23.168 hybrid contribution 0.468 0.903 -0.558 1.160 sum 7.794 -20.842 -3.754 22.566 Atomic orbital electron populations 1.69618 1.06023 1.28467 1.49286 1.25330 0.95664 0.99952 0.96764 0.85759 0.79686 0.80806 0.77846 1.19119 1.20610 1.20591 1.19776 0.93485 0.81956 1.48204 0.87610 1.41790 1.09513 1.04449 1.62526 1.19728 0.88283 0.84970 0.85655 1.90491 1.13727 1.86842 1.57457 1.20825 0.91159 0.84766 1.03294 1.44804 1.11385 1.03100 1.78629 1.15204 0.83964 0.79706 0.77851 1.90937 1.13225 1.83665 1.58609 1.47905 1.04842 1.05878 1.79351 1.22183 0.99956 0.78045 0.98851 1.22115 0.93762 0.98715 0.96981 0.87734 1.22121 0.90713 0.91373 0.94982 1.86433 1.55619 1.58209 1.37237 1.23432 0.91554 0.98034 1.03948 0.85188 1.20233 0.85974 0.77114 0.75884 1.93202 1.93655 1.56765 1.72531 1.93201 1.94757 1.89716 1.38196 1.93230 1.60483 1.65850 1.96279 1.22251 0.82033 0.98223 0.99128 0.91605 0.76999 0.89901 0.89844 0.75568 0.88216 0.90545 0.92665 0.93002 0.76792 0.89523 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 13.05 55.50 0.72 -22.88 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.28 29.55 -169.99 -5.02 15.26 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 8 H 0.11 2.96 7.16 -52.48 -0.38 2.58 16 9 N -0.55 -13.35 5.29 -10.96 -0.06 -13.41 16 10 C 0.43 9.60 7.85 -10.99 -0.09 9.52 16 11 O -0.60 -14.93 15.24 5.54 0.08 -14.85 16 12 C 0.13 2.32 6.15 -5.20 -0.03 2.29 16 13 N -0.72 -11.89 5.50 -66.41 -0.37 -12.25 16 14 C 0.73 11.71 8.57 -86.92 -0.74 10.97 16 15 O -0.59 -11.32 16.61 5.29 0.09 -11.23 16 16 N -0.64 -7.71 3.32 -175.06 -0.58 -8.29 16 17 C 0.13 1.36 6.54 -2.41 -0.02 1.34 16 18 C -0.10 -0.75 2.62 -89.22 -0.23 -0.99 16 19 H 0.10 0.78 7.40 -51.93 -0.38 0.40 16 20 C 0.09 0.63 6.14 37.16 0.23 0.86 16 21 O -0.57 -4.50 13.32 -35.23 -0.47 -4.97 16 22 C -0.15 -1.10 2.73 -89.25 -0.24 -1.34 16 23 H 0.13 0.77 7.71 -51.93 -0.40 0.37 16 24 C 0.46 3.71 2.53 37.16 0.09 3.80 16 25 F -0.18 -1.50 16.92 2.25 0.04 -1.46 16 26 F -0.18 -1.56 16.05 2.25 0.04 -1.52 16 27 F -0.18 -1.60 17.17 2.25 0.04 -1.56 16 28 C 0.11 0.99 6.25 -2.44 -0.02 0.98 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.40 9.29 7.90 -40.82 -0.32 8.97 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.41 6.51 5.84 -40.82 -0.24 6.27 16 34 H 0.10 1.19 7.36 -51.93 -0.38 0.81 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 37 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.38 1.46 9.12 45.56 0.42 1.87 16 39 H 0.09 0.75 7.21 -51.93 -0.37 0.38 16 40 H 0.10 0.89 6.87 -51.93 -0.36 0.53 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -32.75 353.47 -5.12 -37.87 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -3.67 Total: 14.29 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: -1.29 Total: 19.69 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.28 Total: -56.84 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.30 Total: -31.05 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.11 Total: -4.55 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.75 -5.12 -37.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312661709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.814 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds