Wall clock time and date at job start Tue Mar 31 2020 22:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47337 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47347 * 300.00655 * 3 2 1 6 6 H 1.48510 * 109.46903 * 60.00320 * 3 2 1 7 7 C 1.38953 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99888 * 179.97438 * 7 2 1 9 9 N 1.37087 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00406 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99584 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00319 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47200 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21588 * 120.00555 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99704 * 180.02562 * 14 13 12 17 17 C 1.48149 * 127.83370 * 180.02562 * 16 14 13 18 18 C 1.54390 * 104.61736 * 140.41444 * 17 16 14 19 19 H 1.09000 * 110.43497 * 142.77592 * 18 17 16 20 20 C 1.52996 * 110.34338 * 264.99294 * 18 17 16 21 21 O 1.42902 * 109.46807 * 290.53693 * 20 18 17 22 22 C 1.54288 * 104.95880 * 23.86501 * 18 17 16 23 23 H 1.09000 * 110.34078 * 241.02289 * 22 18 17 24 24 C 1.52997 * 110.34579 * 118.87210 * 22 18 17 25 25 F 1.39905 * 109.47157 * 59.99589 * 24 22 18 26 26 F 1.39900 * 109.47010 * 299.99980 * 24 22 18 27 27 F 1.39897 * 109.47422 * 179.97438 * 24 22 18 28 28 C 1.48141 * 127.84112 * 359.97438 * 16 14 13 29 29 H 0.96999 * 120.00248 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99849 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.47340 * 59.99980 * 12 10 9 32 32 H 1.08995 * 109.47269 * 300.00130 * 12 10 9 33 33 H 0.97000 * 119.99725 * 0.02562 * 13 12 10 34 34 H 1.08994 * 110.41120 * 21.62595 * 17 16 14 35 35 H 1.09006 * 110.40157 * 259.19389 * 17 16 14 36 36 H 1.08996 * 109.47136 * 50.53508 * 20 18 17 37 37 H 1.08994 * 109.47031 * 170.53630 * 20 18 17 38 38 H 0.96699 * 113.99755 * 179.97438 * 21 20 18 39 39 H 1.08997 * 110.40564 * 100.79809 * 28 16 14 40 40 H 1.09005 * 110.40719 * 338.37093 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2123 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9764 -0.0016 14 6 1.7466 -7.2471 -0.0017 15 8 0.5512 -7.4694 -0.0018 16 7 2.6224 -8.2715 -0.0016 17 6 2.3236 -9.7226 -0.0022 18 6 3.3731 -10.3361 -0.9539 19 1 3.7036 -11.3058 -0.5817 20 6 2.7949 -10.4772 -2.3633 21 8 1.7899 -11.4931 -2.3663 22 6 4.5458 -9.3335 -0.9531 23 1 4.7111 -8.9430 -1.9572 24 6 5.8175 -10.0027 -0.4278 25 9 6.1458 -11.0882 -1.2470 26 9 5.6016 -10.4532 0.8790 27 9 6.8680 -9.0788 -0.4354 28 6 4.1022 -8.2020 -0.0020 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6175 -4.9205 -0.8914 32 1 0.6168 -4.9209 0.8885 33 1 3.1495 -5.7991 -0.0012 34 1 1.3171 -9.9032 -0.3791 35 1 2.4342 -10.1337 1.0013 36 1 2.3542 -9.5293 -2.6718 37 1 3.5903 -10.7509 -3.0565 38 1 1.3786 -11.6369 -3.2296 39 1 4.4911 -8.3751 1.0014 40 1 4.4372 -7.2356 -0.3789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312661709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:52 Heat of formation + Delta-G solvation = -287.770755 kcal Electronic energy + Delta-G solvation = -30015.471029 eV Core-core repulsion = 25028.392733 eV Total energy + Delta-G solvation = -4987.078297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.15883 -48.62695 -48.62492 -41.57954 -40.28999 -39.28712 -37.28734 -36.25370 -35.33634 -33.62931 -33.32047 -31.22370 -29.39046 -27.08275 -26.91820 -25.88896 -23.66017 -21.65296 -21.34800 -21.24805 -20.15101 -19.66213 -19.45321 -19.22732 -18.71206 -18.01130 -17.55612 -17.14595 -16.95864 -16.59306 -16.30569 -16.00791 -15.73196 -15.65044 -15.49957 -15.31135 -15.12991 -15.04848 -14.92504 -14.75058 -14.65786 -14.45969 -14.00155 -13.72461 -13.56929 -13.54112 -13.19274 -12.98646 -12.91106 -12.75910 -12.47420 -12.43502 -12.10651 -11.85170 -11.57345 -11.51042 -10.94542 -10.55485 -10.40614 -10.09307 -9.75981 -8.50571 -6.00525 1.25876 1.35640 1.44226 1.57816 1.66163 1.88944 1.99908 2.27848 2.57299 2.60402 2.82193 2.90357 3.16725 3.16965 3.29206 3.50926 3.56598 3.78472 3.95277 4.16695 4.20273 4.24581 4.39233 4.42019 4.44783 4.51207 4.61222 4.65162 4.74437 4.83022 5.10030 5.25148 5.39531 5.86888 5.92732 6.48310 6.80673 6.85836 7.04275 7.36823 7.46523 7.94753 8.66567 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.002439 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.961244 B =11476.268989 C =12539.051116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.435 3.565 11 O -0.623 6.623 12 C 0.141 3.859 13 N -0.721 5.721 14 C 0.731 3.269 15 O -0.623 6.623 16 N -0.636 5.636 17 C 0.130 3.870 18 C -0.089 4.089 19 H 0.113 0.887 20 C 0.087 3.913 21 O -0.587 6.587 22 C -0.138 4.138 23 H 0.150 0.850 24 C 0.467 3.533 25 F -0.179 7.179 26 F -0.182 7.182 27 F -0.182 7.182 28 C 0.103 3.897 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.409 0.591 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.401 0.599 39 H 0.095 0.905 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.345 -22.476 -4.306 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.511 6.511 12 C 0.013 3.987 13 N -0.379 5.379 14 C 0.433 3.567 15 O -0.504 6.504 16 N -0.374 5.374 17 C 0.007 3.993 18 C -0.109 4.109 19 H 0.131 0.869 20 C 0.010 3.990 21 O -0.396 6.396 22 C -0.158 4.158 23 H 0.168 0.832 24 C 0.413 3.587 25 F -0.161 7.161 26 F -0.163 7.163 27 F -0.164 7.164 28 C -0.020 4.020 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.248 0.752 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.251 0.749 39 H 0.113 0.887 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.225 -22.395 -3.664 24.137 hybrid contribution 0.216 0.973 -0.408 1.077 sum 8.441 -21.422 -4.073 23.383 Atomic orbital electron populations 1.69682 1.07012 1.29560 1.49383 1.26116 0.96509 1.02657 0.95831 0.84823 0.78189 0.76793 0.78253 1.19354 1.19684 1.19750 1.19769 0.92968 0.83481 1.50225 0.89501 1.41833 1.09614 1.04578 1.63407 1.20368 0.88105 0.85827 0.83551 1.90469 1.15101 1.87526 1.58011 1.20622 0.90922 0.82949 1.04239 1.44702 1.11132 1.03029 1.79054 1.15230 0.83910 0.79943 0.77634 1.90908 1.14965 1.84207 1.60291 1.47845 1.05840 1.05803 1.77909 1.22323 0.99899 0.76989 1.00061 1.22074 0.93022 0.98846 0.96920 0.86872 1.22121 0.91178 0.90914 0.94834 1.86390 1.56013 1.58224 1.38970 1.23361 0.90987 0.97095 1.04390 0.83217 1.20222 0.85884 0.76981 0.75652 1.93206 1.93654 1.56736 1.72481 1.93197 1.94757 1.89771 1.38604 1.93224 1.60802 1.66060 1.96286 1.22427 0.80056 0.99248 1.00274 0.91091 0.76688 0.88790 0.88973 0.75232 0.90081 0.89579 0.93766 0.90817 0.74891 0.88706 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.16 13.05 21.66 0.28 -47.88 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 1.00 41.21 29.55 68.60 2.03 43.24 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.34 -18.16 9.68 84.04 0.81 -17.34 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.53 5.29 -306.98 -1.62 -29.16 16 10 C 0.43 19.55 7.85 87.66 0.69 20.24 16 11 O -0.62 -31.24 15.24 -3.08 -0.05 -31.29 16 12 C 0.14 5.06 6.15 85.63 0.53 5.59 16 13 N -0.72 -23.33 5.50 -482.30 -2.65 -25.99 16 14 C 0.73 23.03 8.57 179.05 1.53 24.56 16 15 O -0.62 -23.98 16.61 -3.99 -0.07 -24.04 16 16 N -0.64 -14.68 3.32 -826.01 -2.74 -17.42 16 17 C 0.13 2.51 6.54 86.53 0.57 3.08 16 18 C -0.09 -1.23 2.62 -9.89 -0.03 -1.25 16 19 H 0.11 1.43 7.40 -2.39 -0.02 1.41 16 20 C 0.09 1.11 6.14 71.98 0.44 1.55 16 21 O -0.59 -8.40 13.32 -148.98 -1.98 -10.38 16 22 C -0.14 -1.73 2.73 -9.91 -0.03 -1.75 16 23 H 0.15 1.34 7.71 -2.39 -0.02 1.32 16 24 C 0.47 6.48 2.53 71.98 0.18 6.67 16 25 F -0.18 -2.56 16.92 44.97 0.76 -1.80 16 26 F -0.18 -2.85 16.05 44.97 0.72 -2.13 16 27 F -0.18 -2.94 17.17 44.97 0.77 -2.17 16 28 C 0.10 1.73 6.25 86.51 0.54 2.27 16 29 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 31 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 32 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.41 12.83 5.84 -92.71 -0.54 12.29 16 34 H 0.08 1.91 7.36 -2.39 -0.02 1.90 16 35 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.04 0.66 8.13 -2.39 -0.02 0.64 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.40 2.45 9.12 -74.06 -0.68 1.78 16 39 H 0.09 1.48 7.21 -2.39 -0.02 1.46 16 40 H 0.10 1.67 6.87 -2.38 -0.02 1.66 16 Total: -1.00 -69.52 353.47 0.35 -69.17 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.80 Total: 36.31 kcal Atomic # 6 Polarization: 37.83 SS G_CDS: 5.71 Total: 43.53 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -6.73 Total: -120.44 kcal Atomic # 8 Polarization: -63.61 SS G_CDS: -2.10 Total: -65.71 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 2.25 Total: -6.10 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -69.52 0.35 -69.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312661709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.606 kcal (2) G-P(sol) polarization free energy of solvation -69.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds