Wall clock time and date at job start Tue Mar 31 2020 23:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.36858 * 2 1 4 4 C 1.54378 * 110.41450 * 237.64773 * 2 1 3 5 5 H 1.08999 * 110.32293 * 336.26934 * 4 2 1 6 6 N 1.46507 * 110.32259 * 98.47221 * 4 2 1 7 7 C 1.34774 * 119.99703 * 205.00331 * 6 4 2 8 8 O 1.21622 * 120.00242 * 359.97438 * 7 6 4 9 9 C 1.47174 * 119.99607 * 180.02562 * 7 6 4 10 10 C 1.38245 * 128.47539 * 180.02562 * 9 7 6 11 11 N 1.31237 * 111.89070 * 179.97438 * 10 9 7 12 12 N 1.27337 * 120.03796 * 359.97438 * 11 10 9 13 13 S 1.56639 * 109.73734 * 359.70072 * 12 11 10 14 14 C 1.54258 * 105.06304 * 217.36934 * 4 2 1 15 15 C 1.54382 * 105.06228 * 359.97438 * 14 4 2 16 16 N 1.48559 * 110.41220 * 122.47403 * 2 1 3 17 17 C 1.46899 * 111.00103 * 277.81941 * 16 2 1 18 18 C 1.50703 * 109.47163 * 169.99711 * 17 16 2 19 19 O 1.21297 * 120.00105 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00238 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00120 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00246 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00014 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00202 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00115 * 180.02562 * 23 21 20 26 26 H 1.48488 * 109.47121 * 59.99459 * 25 23 21 27 27 H 1.48501 * 109.47041 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46790 * 299.99428 * 25 23 21 29 29 H 1.09002 * 109.47153 * 182.34991 * 1 2 3 30 30 H 1.09001 * 109.46832 * 62.35182 * 1 2 3 31 31 H 1.09004 * 109.47261 * 302.35163 * 1 2 3 32 32 H 0.97003 * 119.99770 * 25.00503 * 6 4 2 33 33 H 1.08003 * 124.05583 * 0.02562 * 10 9 7 34 34 H 1.08994 * 110.32796 * 118.89484 * 14 4 2 35 35 H 1.09007 * 110.32578 * 241.10835 * 14 4 2 36 36 H 1.09001 * 110.41404 * 142.62920 * 15 14 4 37 37 H 1.09005 * 110.41200 * 265.07664 * 15 14 4 38 38 H 1.08993 * 109.47633 * 289.99770 * 17 16 2 39 39 H 1.09002 * 109.46977 * 49.99974 * 17 16 2 40 40 H 0.96997 * 119.99832 * 0.02562 * 20 18 17 41 41 H 0.96997 * 120.00115 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2222 5 1 1.3236 -1.4862 -1.5776 6 7 2.4356 0.1563 -2.2926 7 6 2.4425 -0.2600 -3.5744 8 8 2.1443 -1.4082 -3.8426 9 6 2.8119 0.6747 -4.6496 10 6 2.8768 0.4383 -6.0101 11 7 3.2443 1.5081 -6.6756 12 7 3.4904 2.5920 -6.0543 13 16 3.2733 2.3818 -4.5174 14 6 3.3178 -1.5181 -0.7070 15 6 3.4295 -1.1302 0.7831 16 7 2.0481 -0.7476 1.1746 17 6 2.0569 0.0988 2.3752 18 6 2.3502 -0.7496 3.5858 19 8 2.5344 -1.9419 3.4606 20 7 2.4090 -0.1833 4.8074 21 6 2.6764 -0.9550 5.9085 22 1 2.8396 -2.0167 5.7972 23 6 2.7364 -0.3713 7.1680 24 7 2.5374 0.9206 7.3037 25 14 3.1015 -1.4226 8.6683 26 1 4.4288 -2.0689 8.5087 27 1 3.1107 -0.5669 9.8820 28 1 2.0555 -2.4676 8.8068 29 1 -0.3633 -1.0268 0.0421 30 1 -0.3633 0.4769 -0.9103 31 1 -0.3634 0.5499 0.8682 32 1 2.6738 1.0720 -2.0787 33 1 2.6514 -0.5124 -6.4703 34 1 3.1862 -2.5952 -0.8093 35 1 4.2043 -1.1908 -1.2504 36 1 3.7694 -1.9814 1.3731 37 1 4.1079 -0.2859 0.9064 38 1 2.8251 0.8653 2.2740 39 1 1.0828 0.5739 2.4920 40 1 2.2621 0.7702 4.9075 41 1 2.5797 1.3282 8.1829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316776688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:40 Heat of formation + Delta-G solvation = 16.830447 kcal Electronic energy + Delta-G solvation = -26314.218620 eV Core-core repulsion = 22357.251185 eV Total energy + Delta-G solvation = -3956.967435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34572 -40.42083 -39.02454 -37.67646 -34.80142 -33.87616 -32.70215 -31.54402 -31.30045 -30.89354 -28.17380 -26.52543 -25.48967 -24.19391 -23.36712 -21.57617 -20.79761 -20.52661 -19.67962 -19.18219 -17.97656 -17.80963 -16.84120 -16.37683 -16.00991 -15.68891 -15.41513 -15.00076 -14.86098 -14.70650 -14.44308 -14.06574 -13.86129 -13.53315 -13.32293 -13.21063 -12.60262 -12.47617 -12.27575 -11.99189 -11.79811 -11.59709 -11.45887 -11.36001 -11.14601 -10.88643 -10.85230 -10.74992 -10.61408 -10.54116 -10.45854 -10.37522 -10.23219 -9.53097 -9.48119 -8.60656 -8.10432 -7.97572 -6.43600 -3.84387 -0.79637 0.27024 0.94945 1.46768 2.44081 2.49630 3.18595 3.24433 3.28721 3.50100 3.86627 3.92503 4.12548 4.17640 4.24070 4.35673 4.57512 4.87410 5.07078 5.08842 5.14624 5.20578 5.24325 5.31149 5.52359 5.57857 5.68537 5.75712 5.80200 5.81064 6.00211 6.14462 6.15674 6.26374 6.33077 6.83453 6.99960 7.09747 7.12321 7.53253 7.55957 8.03911 8.59800 9.16416 9.52290 10.04300 10.74095 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.002012 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.221754 B =13912.507006 C =14274.150440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.051 3.949 3 H 0.055 0.945 4 C 0.145 3.855 5 H 0.109 0.891 6 N -0.712 5.712 7 C 0.603 3.397 8 O -0.510 6.510 9 C -0.286 4.286 10 C 0.076 3.924 11 N -0.251 5.251 12 N -0.254 5.254 13 S 0.422 5.578 14 C -0.133 4.133 15 C 0.037 3.963 16 N -0.474 5.474 17 C 0.035 3.965 18 C 0.445 3.555 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.398 0.602 33 H 0.217 0.783 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.391 0.609 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 6.012 -21.921 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 H 0.073 0.927 4 C 0.041 3.959 5 H 0.127 0.873 6 N -0.364 5.364 7 C 0.385 3.615 8 O -0.385 6.385 9 C -0.428 4.428 10 C -0.091 4.091 11 N -0.115 5.115 12 N -0.235 5.235 13 S 0.557 5.443 14 C -0.172 4.172 15 C -0.091 4.091 16 N -0.199 5.199 17 C -0.097 4.097 18 C 0.230 3.770 19 O -0.459 6.459 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.233 0.767 33 H 0.234 0.766 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.224 0.776 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.109 5.875 -22.211 22.975 hybrid contribution 0.353 0.029 0.836 0.908 sum 0.243 5.904 -21.375 22.177 Atomic orbital electron populations 1.21730 0.92975 1.03337 1.01449 1.22885 0.96987 0.95674 0.90310 0.92736 1.21917 0.97724 0.90925 0.85329 0.87294 1.46043 1.69445 1.15264 1.05651 1.16445 0.77818 0.85972 0.81229 1.90885 1.47453 1.17538 1.82653 1.28109 1.14660 1.00695 0.99297 1.24514 0.96488 0.99429 0.88698 1.70717 1.14246 0.95145 1.31397 1.78917 1.19924 1.20729 1.03952 1.82656 1.45473 1.02223 1.13941 1.22767 0.96968 1.01759 0.95737 1.23186 0.89554 1.01576 0.94752 1.65135 1.18772 1.35447 1.00515 1.22078 1.01959 0.94540 0.91098 1.19654 0.84703 0.88729 0.83899 1.90521 1.54527 1.15328 1.85522 1.41847 1.62340 1.10851 1.05198 1.19638 1.44938 0.93988 0.84209 0.87976 1.25254 0.97470 0.96083 0.99155 1.69601 1.49895 1.09878 1.25059 0.85923 0.79193 0.79202 0.79940 1.19939 1.21007 1.19876 0.91124 0.92494 0.92012 0.76709 0.76643 0.89811 0.91065 0.88137 0.94201 0.93121 0.89209 0.77562 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.30 37.16 0.35 -1.04 16 2 C 0.05 0.55 2.58 -66.07 -0.17 0.38 16 3 H 0.05 0.49 7.61 -51.93 -0.40 0.10 16 4 C 0.15 1.48 2.96 -66.55 -0.20 1.29 16 5 H 0.11 1.25 7.28 -51.93 -0.38 0.87 16 6 N -0.71 -5.61 5.02 -53.62 -0.27 -5.88 16 7 C 0.60 5.55 7.80 -12.63 -0.10 5.45 16 8 O -0.51 -6.43 16.63 5.26 0.09 -6.34 16 9 C -0.29 -2.14 6.81 -35.95 -0.24 -2.38 16 10 C 0.08 0.58 11.55 -17.80 -0.21 0.37 16 11 N -0.25 -2.33 11.54 30.36 0.35 -1.98 16 12 N -0.25 -2.26 12.51 60.35 0.75 -1.51 16 13 S 0.42 2.47 23.05 -107.50 -2.48 -0.01 16 14 C -0.13 -1.52 6.79 -25.35 -0.17 -1.69 16 15 C 0.04 0.53 5.92 -2.16 -0.01 0.51 16 16 N -0.47 -7.09 4.66 -223.54 -1.04 -8.13 16 17 C 0.03 0.57 5.27 -4.97 -0.03 0.55 16 18 C 0.45 10.07 7.63 -10.98 -0.08 9.99 16 19 O -0.58 -15.07 14.80 5.54 0.08 -14.99 16 20 N -0.57 -13.87 5.29 -10.96 -0.06 -13.93 16 21 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 25 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.64 7.39 -51.93 -0.38 0.25 16 32 H 0.40 2.16 7.80 -40.82 -0.32 1.84 16 33 H 0.22 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 36 H 0.10 1.74 7.24 -51.93 -0.38 1.36 16 37 H 0.04 0.52 7.75 -51.93 -0.40 0.12 16 38 H 0.05 0.74 7.77 -51.93 -0.40 0.34 16 39 H 0.09 1.33 7.23 -51.93 -0.38 0.95 16 40 H 0.39 9.15 7.90 -40.82 -0.32 8.82 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -33.12 363.08 -7.47 -40.59 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.97 Total: 8.71 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.11 Total: 5.61 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.46 Total: -54.78 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.17 Total: -21.33 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.48 Total: -0.01 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.12 -7.47 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316776688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.425 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds