Wall clock time and date at job start Tue Mar 31 2020 23:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.46109 * 2 1 4 4 C 1.54376 * 110.41326 * 237.58539 * 2 1 3 5 5 H 1.09002 * 110.32375 * 336.36377 * 4 2 1 6 6 N 1.46499 * 110.32692 * 98.47119 * 4 2 1 7 7 C 1.34771 * 119.99999 * 203.57100 * 6 4 2 8 8 O 1.21560 * 120.00271 * 0.02562 * 7 6 4 9 9 C 1.47757 * 119.99859 * 180.02562 * 7 6 4 10 10 C 1.39346 * 124.11899 * 180.02562 * 9 7 6 11 11 N 1.30091 * 112.14683 * 179.97438 * 10 9 7 12 12 S 1.55918 * 108.75554 * 359.97438 * 11 10 9 13 13 N 1.31493 * 124.11631 * 359.97438 * 9 7 6 14 14 C 1.54264 * 105.14779 * 217.42106 * 4 2 1 15 15 C 1.54379 * 105.06174 * 359.94629 * 14 4 2 16 16 N 1.48568 * 104.59098 * 23.85662 * 15 14 4 17 17 C 1.46906 * 110.99272 * 200.96102 * 16 15 14 18 18 C 1.50696 * 109.46932 * 293.84018 * 17 16 15 19 19 O 1.21289 * 120.00358 * 354.18694 * 18 17 16 20 20 N 1.34774 * 119.99762 * 174.17770 * 18 17 16 21 21 C 1.37103 * 120.00155 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99977 * 0.02562 * 21 20 18 23 23 C 1.38944 * 120.00132 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00074 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99953 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47011 * 90.00258 * 25 23 21 27 27 H 1.48496 * 109.47033 * 210.00243 * 25 23 21 28 28 H 1.48499 * 109.46950 * 330.00218 * 25 23 21 29 29 H 1.09000 * 109.47116 * 182.41101 * 1 2 3 30 30 H 1.08995 * 109.47328 * 302.41548 * 1 2 3 31 31 H 1.09003 * 109.47155 * 62.41504 * 1 2 3 32 32 H 0.97004 * 119.99284 * 23.57348 * 6 4 2 33 33 H 1.08006 * 123.92159 * 0.23918 * 10 9 7 34 34 H 1.09004 * 110.31999 * 118.84303 * 14 4 2 35 35 H 1.09001 * 110.32339 * 241.04842 * 14 4 2 36 36 H 1.08998 * 110.40995 * 142.62941 * 15 14 4 37 37 H 1.08993 * 110.41286 * 264.95665 * 15 14 4 38 38 H 1.08991 * 109.47259 * 53.84548 * 17 16 15 39 39 H 1.09001 * 109.46837 * 173.85123 * 17 16 15 40 40 H 0.97000 * 120.00243 * 0.02562 * 20 18 17 41 41 H 0.97009 * 120.00067 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0685 -0.7756 -1.2214 5 1 1.3229 -1.4868 -1.5770 6 7 2.4356 0.1537 -2.2928 7 6 2.4705 -0.2716 -3.5711 8 8 2.1968 -1.4262 -3.8353 9 6 2.8413 0.6654 -4.6517 10 6 2.9043 0.3185 -5.9998 11 7 3.2543 1.3229 -6.7488 12 16 3.4783 2.5709 -5.8414 13 7 3.1512 1.9286 -4.4583 14 6 3.3174 -1.5208 -0.7071 15 6 3.4310 -1.1326 0.7828 16 7 2.0509 -0.7474 1.1755 17 6 2.0624 0.0998 2.3756 18 6 2.5567 -0.7021 3.5518 19 8 2.7684 -1.8902 3.4299 20 7 2.7638 -0.0991 4.7392 21 6 3.2140 -0.8285 5.8093 22 1 3.4031 -1.8863 5.7006 23 6 3.4280 -0.2067 7.0332 24 7 3.1983 1.0804 7.1654 25 14 4.0421 -1.2005 8.4910 26 1 5.5270 -1.1898 8.5070 27 1 3.5292 -0.6019 9.7494 28 1 3.5583 -2.5997 8.3752 29 1 -0.3633 -1.0268 0.0432 30 1 -0.3634 0.5509 0.8675 31 1 -0.3634 0.4759 -0.9109 32 1 2.6537 1.0751 -2.0820 33 1 2.6836 -0.6684 -6.3791 34 1 3.1840 -2.5979 -0.8086 35 1 4.2036 -1.1953 -1.2518 36 1 3.7704 -1.9841 1.3726 37 1 4.1121 -0.2906 0.9053 38 1 2.7229 0.9513 2.2130 39 1 1.0525 0.4567 2.5780 40 1 2.5943 0.8510 4.8368 41 1 3.3474 1.5144 8.0201 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316777617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:44 Heat of formation + Delta-G solvation = 1.638282 kcal Electronic energy + Delta-G solvation = -26436.829151 eV Core-core repulsion = 22479.202935 eV Total energy + Delta-G solvation = -3957.626217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56005 -40.03431 -38.79457 -37.59182 -34.80199 -34.02963 -33.72294 -31.48363 -31.24357 -30.82776 -28.03330 -26.46098 -25.42479 -24.15967 -23.37461 -21.42657 -20.61423 -20.30527 -19.82881 -19.11762 -18.02985 -17.86451 -16.70216 -16.44000 -15.96736 -15.80737 -15.27899 -15.02570 -14.70570 -14.58573 -14.29798 -13.96406 -13.83925 -13.44179 -13.21703 -12.73987 -12.51102 -12.26764 -11.92398 -11.90885 -11.72403 -11.64769 -11.51051 -11.50739 -11.39775 -11.26687 -11.13976 -10.81974 -10.66615 -10.42314 -10.39135 -10.22314 -9.71185 -9.50099 -9.30091 -8.51946 -8.08120 -7.95485 -6.42339 -3.83050 -0.05153 0.90715 1.10050 1.14724 2.68204 2.74459 3.17297 3.26097 3.32159 3.89923 3.93182 4.06656 4.23013 4.35130 4.46935 4.63755 4.66863 4.98660 5.02126 5.14638 5.22976 5.24110 5.33951 5.42039 5.60369 5.66468 5.76060 5.87327 5.89747 5.90732 5.92655 6.10283 6.20235 6.27639 6.31116 6.45180 7.05988 7.10317 7.19232 7.54729 7.75150 8.05576 8.61131 9.17719 9.53723 10.05589 10.75434 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025682 B = 0.001995 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.004679 B =14029.794344 C =14357.528609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.051 3.949 3 H 0.055 0.945 4 C 0.144 3.856 5 H 0.106 0.894 6 N -0.700 5.700 7 C 0.605 3.395 8 O -0.519 6.519 9 C 0.012 3.988 10 C 0.091 3.909 11 N -0.578 5.578 12 S 0.722 5.278 13 N -0.548 5.548 14 C -0.133 4.133 15 C 0.037 3.963 16 N -0.475 5.475 17 C 0.036 3.964 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.408 0.592 33 H 0.216 0.784 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.392 0.608 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 6.693 -24.962 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.058 4.058 3 H 0.073 0.927 4 C 0.040 3.960 5 H 0.124 0.876 6 N -0.351 5.351 7 C 0.385 3.615 8 O -0.393 6.393 9 C -0.163 4.163 10 C -0.103 4.103 11 N -0.419 5.419 12 S 0.763 5.237 13 N -0.398 5.398 14 C -0.172 4.172 15 C -0.091 4.091 16 N -0.200 5.200 17 C -0.096 4.096 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.244 0.756 33 H 0.232 0.768 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.225 0.775 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.163 6.660 -25.421 26.305 hybrid contribution 0.379 -0.147 1.265 1.328 sum -0.784 6.513 -24.156 25.031 Atomic orbital electron populations 1.21710 0.93057 1.03175 1.01402 1.22908 0.96855 0.95756 0.90302 0.92716 1.21905 0.97614 0.91005 0.85484 0.87568 1.45970 1.68468 1.15140 1.05564 1.16715 0.77745 0.85614 0.81438 1.90856 1.48739 1.17028 1.82716 1.22568 1.07153 0.90222 0.96378 1.23808 0.97965 1.00400 0.88119 1.72276 1.22662 1.07431 1.39528 1.79139 1.44838 1.17709 0.81970 1.72444 1.19667 1.13096 1.34563 1.22765 0.97015 1.01592 0.95797 1.23175 0.89518 1.01722 0.94680 1.65187 1.18963 1.35264 1.00585 1.22074 1.01928 0.94411 0.91208 1.19661 0.84840 0.88505 0.84048 1.90513 1.56215 1.15403 1.83834 1.41864 1.58366 1.11420 1.08538 1.19693 1.40287 0.94988 0.87746 0.87907 1.25258 0.97735 0.95936 0.99065 1.69613 1.49139 1.09247 1.26397 0.85861 0.78804 0.79663 0.79991 1.20451 1.20943 1.19389 0.91192 0.92127 0.92517 0.75627 0.76817 0.89907 0.91155 0.87813 0.94349 0.93394 0.89068 0.77539 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.31 37.16 0.35 -1.15 16 2 C 0.05 0.62 2.60 -65.98 -0.17 0.45 16 3 H 0.05 0.61 7.59 -51.93 -0.39 0.21 16 4 C 0.14 1.68 2.93 -66.55 -0.20 1.49 16 5 H 0.11 1.33 7.32 -51.93 -0.38 0.95 16 6 N -0.70 -7.02 5.03 -53.44 -0.27 -7.29 16 7 C 0.61 6.55 7.82 -12.37 -0.10 6.45 16 8 O -0.52 -6.92 16.48 5.31 0.09 -6.83 16 9 C 0.01 0.11 6.81 -83.71 -0.57 -0.46 16 10 C 0.09 0.73 11.22 -17.88 -0.20 0.53 16 11 N -0.58 -4.63 11.41 19.42 0.22 -4.41 16 12 S 0.72 4.33 23.69 -107.50 -2.55 1.78 16 13 N -0.55 -4.51 11.00 23.18 0.26 -4.26 16 14 C -0.13 -1.70 6.79 -25.35 -0.17 -1.87 16 15 C 0.04 0.58 5.73 -2.18 -0.01 0.56 16 16 N -0.48 -7.61 4.78 -223.44 -1.07 -8.67 16 17 C 0.04 0.62 5.24 -4.97 -0.03 0.59 16 18 C 0.44 10.31 7.47 -10.99 -0.08 10.23 16 19 O -0.58 -15.32 14.39 5.55 0.08 -15.24 16 20 N -0.56 -14.14 5.29 -10.97 -0.06 -14.20 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 25 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.66 7.52 -51.93 -0.39 0.27 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.41 3.59 7.95 -40.82 -0.32 3.26 16 33 H 0.22 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 36 H 0.10 1.95 6.85 -51.93 -0.36 1.59 16 37 H 0.04 0.58 7.88 -51.93 -0.41 0.17 16 38 H 0.05 0.75 7.96 -51.93 -0.41 0.34 16 39 H 0.09 1.44 7.45 -51.93 -0.39 1.05 16 40 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -32.60 361.41 -8.56 -41.16 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -4.99 Total: 11.31 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -1.42 Total: 8.92 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.19 Total: -62.50 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.17 Total: -22.07 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -2.55 Total: 1.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.60 -8.56 -41.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316777617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.799 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds